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Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization.
Gibbons FD, Proft M, Struhl K, Roth FP
Genome Biol
2005,
6
:R96
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PubMed Central articles that cite the above article:
1.
High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome.
Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI
Genes Dev
2006 Apr 1,
20
:848-57
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Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters.
Kwon YS, Garcia-Bassets I, Hutt KR, Cheng CS, Jin M, Liu D, Benner C, Wang D, Ye Z, Bibikova M, Fan JB, Duan L, Glass CK, Rosenfeld MG, Fu XD
Proc Natl Acad Sci U S A
2007 Mar 20,
104
:4852-7
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Genome-wide analysis of chromatin status using tiling microarrays.
Shivaswamy S, Iyer VR
Methods
2007 Mar,
41
:304-11
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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD
PLoS Biol
2008 Feb,
6
:e27
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*** Unable to retrieve article 18271625 ***
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6.
ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes.
Margolin AA, Palomero T, Sumazin P, Califano A, Ferrando AA, Stolovitzky G
Proc Natl Acad Sci U S A
2009 Jan 6,
106
:244-9
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