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Inferring protein domain interactions from databases of interacting proteins.
Riley R, Lee C, Sabatti C, Eisenberg D
Genome Biol
2005,
6
:R89
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BioMed Central articles that cite the above article:
1.
Methodology article
Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels
Yip KY, Kim PM, McDermott D, Gerstein M
BMC Bioinformatics
2009,
10
:241
(5 August 2009)
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Research article
Triangle network motifs predict complexes by complementing high-error interactomes with structural information
Andreopoulos B, Winter C, Labudde D, Schroeder M
BMC Bioinformatics
2009,
10
:196
(27 June 2009)
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3.
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Protein function annotation by homology-based inference
Loewenstein Y, Raimondo D, Redfern OC, Watson J, Frishman D, Linial M, Orengo C, Thornton J, Tramontano A
Genome Biology
2009,
10
:207
(2 February 2009)
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4.
Software
NetGrep: fast network schema searches in interactomes
Banks E, Nabieva E, Peterson R, Singh M
Genome Biology
2008,
9
:R138
(18 September 2008)
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Interrogating domain-domain interactions with parsimony based approaches
Guimarães KS, Przytycka TM
BMC Bioinformatics
2008,
9
:171
(26 March 2008)
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6.
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The MoVIN server for the analysis of protein interaction networks
Marcatili P, Bussotti G, Tramontano A
BMC Bioinformatics
2008,
9
(Suppl 2):S11
(26 March 2008)
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7.
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Analysis on multi-domain cooperation for predicting protein-protein interactions
Wang RS, Wang Y, Wu LY, Zhang XS, Chen L
BMC Bioinformatics
2007,
8
:391
(16 October 2007)
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8.
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InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
Wang H, Segal E, Ben-Hur A, Li QR, Vidal M, Koller D
Genome Biology
2007,
8
:R192
(14 September 2007)
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An integrative
in silico
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Sugaya N, Ikeda K, Tashiro T, Takeda S, Otomo J, Ishida Y, Shiratori A, Toyoda A, Noguchi H, Takeda T, Kuhara S, Sakaki Y, Iwayanagi T
BMC Pharmacology
2007,
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:10
(20 August 2007)
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Reuse of structural domain
domain interactions in protein networks
Schuster-Böckler B, Bateman A
BMC Bioinformatics
2007,
8
:259
(18 July 2007)
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A domain-based approach to predict protein-protein interactions
Singhal M, Resat H
BMC Bioinformatics
2007,
8
:199
(13 June 2007)
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Evolutionary conservation of domain-domain interactions
Itzhaki Z, Akiva E, Altuvia Y, Margalit H
Genome Biology
2006,
7
:R125
(21 December 2006)
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An evaluation of human protein-protein interaction data in the public domain
Mathivanan S, Periaswamy B, Gandhi TKB, Kandasamy K, Suresh S, Mohmood R, Ramachandra YL, Pandey A
BMC Bioinformatics
2006,
7
(Suppl 5):S19
(18 December 2006)
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14.
Method
Predicting domain-domain interactions using a parsimony approach
Guimarães KS, Jothi R, Zotenko E, Przytycka TM
Genome Biology
2006,
7
:R104
(9 November 2006)
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Topology and weights in a protein domain interaction network
a novel way to predict protein interactions
Wuchty S
BMC Genomics
2006,
7
:122
(23 May 2006)
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