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Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein.
Liu J, Stormo GD
BMC Bioinformatics
2005,
6
:176
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PubMed Central articles that cite the above article:
1.
Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins.
Ahmad S, Keskin O, Sarai A, Nussinov R
Nucleic Acids Res
2008 Oct,
36
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An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.
Sander JD, Zaback P, Joung JK, Voytas DF, Dobbs D
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2009 Feb,
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Experimentally based contact energies decode interactions responsible for protein-DNA affinity and the role of molecular waters at the binding interface.
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Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions.
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Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences.
Shi YY, Miller GA, Qian H, Bomsztyk K
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2006 Aug 1,
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