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Adaptive evolution of transcription factor binding sites.
Berg J, Willmann S, Lässig M
BMC Evol Biol 2004 Oct 28, 4:42
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PubMed Central articles that cite the above article:

1.	Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies. Mustonen V, Lässig M Proc Natl Acad Sci U S A 2005 Nov 1, 102:15936-41 [PubMed Central] [PubMed] [Related articles]
2.	Evolutionary potential of a duplicated repressor-operator pair: simulating pathways using mutation data. Poelwijk FJ, Kiviet DJ, Tans SJ PLoS Comput Biol 2006 May, 2:e58 [PubMed Central] [PubMed] [Related articles]
3.	Effects of random mutations in the human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell environments. van Opijnen T, Boerlijst MC, Berkhout B J Virol 2006 Jul, 80:6678-85 [PubMed Central] [PubMed] [Related articles]
4.	Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication. Johnson R, Gamblin RJ, Ooi L, Bruce AW, Donaldson IJ, Westhead DR, Wood IC, Jackson RM, Buckley NJ Nucleic Acids Res 2006, 34:3862-77 [PubMed Central] [PubMed] [Related articles]
5.	Precise physical models of protein-DNA interaction from high-throughput data. Kinney JB, Tkacik G, Callan CG Proc Natl Acad Sci U S A 2007 Jan 9, 104:501-6 [PubMed Central] [PubMed] [Related articles]
6.	Frequent gain and loss of functional transcription factor binding sites. Doniger SW, Fay JC PLoS Comput Biol 2007 May, 3:e99 [PubMed Central] [PubMed] [Related articles]
7.	Adaptations to fluctuating selection in Drosophila. Mustonen V, Lässig M Proc Natl Acad Sci U S A 2007 Feb 13, 104:2277-82 [PubMed Central] [PubMed] [Related articles]
8.	Divergent evolution of human p53 binding sites: cell cycle versus apoptosis. Horvath MM, Wang X, Resnick MA, Bell DA PLoS Genet 2007 Jul, 3:e127 [PubMed Central] [PubMed] [Related articles]
9.	Differential display of DNA-binding proteins reveals heat-shock factor 1 as a circadian transcription factor. Reinke H, Saini C, Fleury-Olela F, Dibner C, Benjamin IJ, Schibler U Genes Dev 2008 Feb 1, 22:331-45 [PubMed Central] [PubMed] [Related articles]
10.	Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites. Mustonen V, Kinney J, Callan CG, Lässig M Proc Natl Acad Sci U S A 2008 Aug 26, 105:12376-81 [PubMed Central] [PubMed] [Related articles]
11.	Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution. He X, Ling X, Sinha S PLoS Comput Biol 2009 Mar, 5:e1000299 [PubMed Central] [PubMed] [Related articles]
12.	Engineering transcription factors with novel DNA-binding specificity using comparative genomics. Desai TA, Rodionov DA, Gelfand MS, Alm EJ, Rao CV Nucleic Acids Res 2009 May, 37:2493-503 [PubMed Central] [PubMed] [Related articles]
13.	Evolutionary selection between alternative modes of gene regulation. Gerland U, Hwa T Proc Natl Acad Sci U S A 2009 Jun 2, 106:8841-6 [PubMed Central] [PubMed] [Related articles]
14.	Inferring selection on amino acid preference in protein domains. Moses AM, Durbin R Mol Biol Evol 2009 Mar, 26:527-36 [PubMed Central] [PubMed] [Related articles]

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