BioMed Central | Articles which cite: Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.

Log on / register
Feedback | Support | My details

home journals A-Z subject areas advanced search authors reviewers libraries about my BioMed Central

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.
Sinha S, Schroeder MD, Unnerstall U, Gaul U, Siggia ED
BMC Bioinformatics 2004 Sep 9, 5:129
[Full text] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]

printer friendly

to [Help]

PubMed Central articles that cite the above article:

1.	A cis-regulatory sequence within the yellow locus of Drosophila melanogaster required for normal male mating success. Drapeau MD, Cyran SA, Viering MM, Geyer PK, Long AD Genetics 2006 Feb, 172:1009-30 [PubMed Central] [PubMed] [Related articles]
2.	Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression. Blanchette M, Bataille AR, Chen X, Poitras C, Laganière J, Lefèbvre C, Deblois G, Giguère V, Ferretti V, Bergeron D, Coulombe B, Robert F Genome Res 2006 May, 16:656-68 [PubMed Central] [PubMed] [Related articles]
3.	Stubb: a program for discovery and analysis of cis-regulatory modules. Sinha S, Liang Y, Siggia E Nucleic Acids Res 2006 Jul 1, 34:W555-9 [PubMed Central] [PubMed] [Related articles]
4.	PReMod: a database of genome-wide mammalian cis-regulatory module predictions. Ferretti V, Poitras C, Bergeron D, Coulombe B, Robert F, Blanchette M Nucleic Acids Res 2007 Jan, 35:D122-6 [PubMed Central] [PubMed] [Related articles]
5.	Fine-tuning enhancer models to predict transcriptional targets across multiple genomes. Aerts S, van Helden J, Sand O, Hassan BA PLoS One 2007, 2:e1115 [PubMed Central] [PubMed] [Related articles]
6.	MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules. Sinha S, He X PLoS Comput Biol 2007 Nov, 3:e216 [PubMed Central] [PubMed] [Related articles]
7.	* Unable to retrieve article 17997594 * [PubMed Central] [PubMed] [Related articles]
8.	Identification of motifs that are conserved in 12 Drosophila species and regulate midline glia vs. neuron expression. Estes P, Fulkerson E, Zhang Y Genetics 2008 Feb, 178:787-99 [PubMed Central] [PubMed] [Related articles]
9.	A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Noyes MB, Meng X, Wakabayashi A, Sinha S, Brodsky MH, Wolfe SA Nucleic Acids Res 2008 May, 36:2547-60 [PubMed Central] [PubMed] [Related articles]
10.	Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation. Hare EE, Peterson BK, Iyer VN, Meier R, Eisen MB PLoS Genet 2008 Jun, 4:e1000106 [PubMed Central] [PubMed] [Related articles]
11.	PhyloGibbs-MP: module prediction and discriminative motif-finding by Gibbs sampling. Siddharthan R PLoS Comput Biol 2008, 4:e1000156 [PubMed Central] [PubMed] [Related articles]
12.	Multigenome DNA sequence conservation identifies Hox cis-regulatory elements. Kuntz SG, Schwarz EM, DeModena JA, De Buysscher T, Trout D, Shizuya H, Sternberg PW, Wold BJ Genome Res 2008 Dec, 18:1955-68 [PubMed Central] [PubMed] [Related articles]
13.	Evolution of regulatory sequences in 12 Drosophila species. Kim J, He X, Sinha S PLoS Genet 2009 Jan, 5:e1000330 [PubMed Central] [PubMed] [Related articles]
14.	Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Ward LD, Bussemaker HJ Bioinformatics 2008 Jul 1, 24:i165-71 [PubMed Central] [PubMed] [Related articles]
15.	Identifying cis-regulatory sequences by word profile similarity. Leung G, Eisen MB PLoS One 2009, 4:e6901 [PubMed Central] [PubMed] [Related articles]
16.	The complex spatio-temporal regulation of the Drosophila myoblast attractant gene duf/kirre. Guruharsha KG, Ruiz-Gomez M, Ranganath HA, Siddharthan R, Vijayraghavan K PLoS One 2009, 4:e6960 [PubMed Central] [PubMed] [Related articles]

This article is also cited by 6 articles in BioMed Central

You can also check ISI Web of Science for additional citations (subscription required)

printer friendly

to [Help]

Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us