BioMed Central | Articles which cite: Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.

Log on / register
Feedback | Support | My details

home journals A-Z subject areas advanced search authors reviewers libraries jobs about my BioMed Central

Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.
Wang XJ, Reyes JL, Chua NH, Gaasterland T
Genome Biol 2004, 5:R65
[Full text] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]

printer friendly

to [Help]

PubMed Central articles that cite the above article:

1.	MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Mallory AC, Bartel DP, Bartel B Plant Cell 2005 May, 17:1360-75 [PubMed Central] [PubMed] [Related articles]
2.	MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development. Guo HS, Xie Q, Fei JF, Chua NH Plant Cell 2005 May, 17:1376-86 [PubMed Central] [PubMed] [Related articles]
3.	Cloning and characterization of microRNAs from rice. Sunkar R, Girke T, Jain PK, Zhu JK Plant Cell 2005 May, 17:1397-411 [PubMed Central] [PubMed] [Related articles]
4.	Antiquity of microRNAs and their targets in land plants. Axtell MJ, Bartel DP Plant Cell 2005 Jun, 17:1658-73 [PubMed Central] [PubMed] [Related articles]
5.	miRU: an automated plant miRNA target prediction server. Zhang Y Nucleic Acids Res 2005 Jul 1, 33:W701-4 [PubMed Central] [PubMed] [Related articles]
6.	A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Williams L, Carles CC, Osmont KS, Fletcher JC Proc Natl Acad Sci U S A 2005 Jul 5, 102:9703-8 [PubMed Central] [PubMed] [Related articles]
7.	Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell 2005 Aug, 17:2186-203 [PubMed Central] [PubMed] [Related articles]
8.	Expression of Arabidopsis MIRNA genes. Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol 2005 Aug, 138:2145-54 [PubMed Central] [PubMed] [Related articles]
9.	Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice. Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X Plant Physiol 2005 Sep, 139:296-305 [PubMed Central] [PubMed] [Related articles]
10.	Systematic identification of microRNA functions by combining target prediction and expression profiling. Wang X, Wang X Nucleic Acids Res 2006, 34:1646-52 [PubMed Central] [PubMed] [Related articles]
11.	Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts. Hirsch J, Lefort V, Vankersschaver M, Boualem A, Lucas A, Thermes C, d'Aubenton-Carafa Y, Crespi M Plant Physiol 2006 Apr, 140:1192-204 [PubMed Central] [PubMed] [Related articles]
12.	Evolution of Arabidopsis microRNA families through duplication events. Maher C, Stein L, Ware D Genome Res 2006 Apr, 16:510-9 [PubMed Central] [PubMed] [Related articles]
13.	Target prediction for small, noncoding RNAs in bacteria. Tjaden B, Goodwin SS, Opdyke JA, Guillier M, Fu DX, Gottesman S, Storz G Nucleic Acids Res 2006, 34:2791-802 [PubMed Central] [PubMed] [Related articles]
14.	Prediction and identification of herpes simplex virus 1-encoded microRNAs. Cui C, Griffiths A, Li G, Silva LM, Kramer MF, Gaasterland T, Wang XJ, Coen DM J Virol 2006 Jun, 80:5499-508 [PubMed Central] [PubMed] [Related articles]
15.	Computational Prediction of MicroRNAs Encoded in Viral and Other Genomes. Thomassen GO, Røsok O, Rognes T J Biomed Biotechnol 2006, 2006:95270 [PubMed Central] [PubMed] [Related articles]
16.	Time to grow up: the temporal role of smallRNAs in plants. Willmann MR, Poethig RS Curr Opin Plant Biol 2005 Oct, 8:548-52 [PubMed Central] [PubMed] [Related articles]
17.	Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Zhang X, Yuan YR, Pei Y, Lin SS, Tuschl T, Patel DJ, Chua NH Genes Dev 2006 Dec 1, 20:3255-68 [PubMed Central] [PubMed] [Related articles]
18.	The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Nikovics K, Blein T, Peaucelle A, Ishida T, Morin H, Aida M, Laufs P Plant Cell 2006 Nov, 18:2929-45 [PubMed Central] [PubMed] [Related articles]
19.	Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification. Ng Kwang Loong S, Mishra SK RNA 2007 Feb, 13:170-87 [PubMed Central] [PubMed] [Related articles]
20.	A family of microRNAs present in plants and animals. Arteaga-Vázquez M, Caballero-Pérez J, Vielle-Calzada JP Plant Cell 2006 Dec, 18:3355-69 [PubMed Central] [PubMed] [Related articles]
21.	Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos. Yu Z, Jian Z, Shen SH, Purisima E, Wang E Nucleic Acids Res 2007, 35:152-64 [PubMed Central] [PubMed] [Related articles]
22.	Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. Chen HM, Li YH, Wu SH Proc Natl Acad Sci U S A 2007 Feb 27, 104:3318-23 [PubMed Central] [PubMed] [Related articles]
23.	RNA stem-loops: to be or not to be cleaved by RNAse III. Ritchie W, Legendre M, Gautheret D RNA 2007 Apr, 13:457-62 [PubMed Central] [PubMed] [Related articles]
24.	Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body. Song L, Han MH, Lesicka J, Fedoroff N Proc Natl Acad Sci U S A 2007 Mar 27, 104:5437-42 [PubMed Central] [PubMed] [Related articles]
25.	A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y Genes Dev 2007 May 15, 21:1190-203 [PubMed Central] [PubMed] [Related articles]
26.	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves. Welsch R, Maass D, Voegel T, Dellapenna D, Beyer P Plant Physiol 2007 Nov, 145:1073-85 [PubMed Central] [PubMed] [Related articles]
27.	Conservation and evolution of miRNA regulatory programs in plant development. Willmann MR, Poethig RS Curr Opin Plant Biol 2007 Oct, 10:503-11 [PubMed Central] [PubMed] [Related articles]
28.	Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants. Lindow M, Jacobsen A, Nygaard S, Mang Y, Krogh A PLoS Comput Biol 2007 Nov, 3:e238 [PubMed Central] [PubMed] [Related articles]
29.	Investigation of miRNA Biology by Bioinformatic Tools and Impact of miRNAs in Colorectal Cancer-Regulatory Relationship of c-Myc and p53 with miRNAs. Xi Y, Edwards JR, Ju J Cancer Inform 2007, 3:245-253 [PubMed Central] [PubMed] [Related articles]
30.	The p122 subunit of Tobacco Mosaic Virus replicase is a potent silencing suppressor and compromises both small interfering RNA- and microRNA-mediated pathways. Csorba T, Bovi A, Dalmay T, Burgyán J J Virol 2007 Nov, 81:11768-80 [PubMed Central] [PubMed] [Related articles]
31.	Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Narsai R, Howell KA, Millar AH, O'Toole N, Small I, Whelan J Plant Cell 2007 Nov, 19:3418-36 [PubMed Central] [PubMed] [Related articles]
32.	Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ Proc Natl Acad Sci U S A 2008 Mar 25, 105:4951-6 [PubMed Central] [PubMed] [Related articles]
33.	MicroRNA metabolism in plants. Chen X Curr Top Microbiol Immunol 2008, 320:117-36 [PubMed Central] [PubMed] [Related articles]
34.	Evolution of Arabidopsis MIR genes generates novel microRNA classes. Vazquez F, Blevins T, Ailhas J, Boller T, Meins F Nucleic Acids Res 2008 Nov, 36:6429-38 [PubMed Central] [PubMed] [Related articles]

This article is also cited by 7 articles in BioMed Central

You can also check ISI Web of Science for additional citations (subscription required)

printer friendly

to [Help]

Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us