BioMed Central | Articles which cite: Global nucleosome occupancy in yeast.

Log on / register
Feedback | Support | My details

home journals A-Z subject areas advanced search authors reviewers libraries about my BioMed Central

Global nucleosome occupancy in yeast.
Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL
Genome Biol 2004, 5:R62
[Full text] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]

printer friendly

to [Help]

PubMed Central articles that cite the above article:

1.	Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins. Rudra D, Zhao Y, Warner JR EMBO J 2005 Feb 9, 24:533-42 [PubMed Central] [PubMed] [Related articles]
2.	Histone dynamics on the interleukin-2 gene in response to T-cell activation. Chen X, Wang J, Woltring D, Gerondakis S, Shannon MF Mol Cell Biol 2005 Apr, 25:3209-19 [PubMed Central] [PubMed] [Related articles]
3.	Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias. Wirbelauer C, Bell O, Schübeler D Genes Dev 2005 Aug 1, 19:1761-6 [PubMed Central] [PubMed] [Related articles]
4.	Genomewide analysis of nucleosome density histone acetylation and HDAC function in fission yeast. Wirén M, Silverstein RA, Sinha I, Walfridsson J, Lee HM, Laurenson P, Pillus L, Robyr D, Grunstein M, Ekwall K EMBO J 2005 Aug 17, 24:2906-18 [PubMed Central] [PubMed] [Related articles]
5.	Single-nucleosome mapping of histone modifications in S. cerevisiae. Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ PLoS Biol 2005 Oct, 3:e328 [PubMed Central] [PubMed] [Related articles]
6.	* Unable to retrieve article 16122352 * [PubMed Central] [PubMed] [Related articles]
7.	Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide. Rao B, Shibata Y, Strahl BD, Lieb JD Mol Cell Biol 2005 Nov, 25:9447-59 [PubMed Central] [PubMed] [Related articles]
8.	Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites. Wade JT, Reppas NB, Church GM, Struhl K Genes Dev 2005 Nov 1, 19:2619-30 [PubMed Central] [PubMed] [Related articles]
9.	Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling. Li B, Pattenden SG, Lee D, Gutiérrez J, Chen J, Seidel C, Gerton J, Workman JL Proc Natl Acad Sci U S A 2005 Dec 20, 102:18385-90 [PubMed Central] [PubMed] [Related articles]
10.	Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast. Millar CB, Xu F, Zhang K, Grunstein M Genes Dev 2006 Mar 15, 20:711-22 [PubMed Central] [PubMed] [Related articles]
11.	Fine-structure analysis of ribosomal protein gene transcription. Zhao Y, McIntosh KB, Rudra D, Schawalder S, Shore D, Warner JR Mol Cell Biol 2006 Jul, 26:4853-62 [PubMed Central] [PubMed] [Related articles]
12.	Dominant mutants of the Saccharomyces cerevisiae ASF1 histone chaperone bypass the need for CAF-1 in transcriptional silencing by altering histone and Sir protein recruitment. Tamburini BA, Carson JJ, Linger JG, Tyler JK Genetics 2006 Jun, 173:599-610 [PubMed Central] [PubMed] [Related articles]
13.	Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. Hogan GJ, Lee CK, Lieb JD PLoS Genet 2006 Sep 22, 2:e158 [PubMed Central] [PubMed] [Related articles]
14.	* Unable to retrieve article 17002501 * [PubMed Central] [PubMed] [Related articles]
15.	Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting. Gal-Yam EN, Jeong S, Tanay A, Egger G, Lee AS, Jones PA PLoS Genet 2006 Sep 22, 2:e160 [PubMed Central] [PubMed] [Related articles]
16.	* Unable to retrieve article 17002502 * [PubMed Central] [PubMed] [Related articles]
17.	Communication between levels of transcriptional control improves robustness and adaptivity. Tsankov AM, Brown CR, Yu MC, Win MZ, Silver PA, Casolari JM Mol Syst Biol 2006, 2:65 [PubMed Central] [PubMed] [Related articles]
18.	Molecular dissection of formation of senescence-associated heterochromatin foci. Zhang R, Chen W, Adams PD Mol Cell Biol 2007 Mar, 27:2343-58 [PubMed Central] [PubMed] [Related articles]
19.	Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE PLoS Biol 2007 May, 5:e129 [PubMed Central] [PubMed] [Related articles]
20.	* Unable to retrieve article 17439305 * [PubMed Central] [PubMed] [Related articles]
21.	Genome-wide analysis of chromatin status using tiling microarrays. Shivaswamy S, Iyer VR Methods 2007 Mar, 41:304-11 [PubMed Central] [PubMed] [Related articles]
22.	FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD Genome Res 2007 Jun, 17:877-85 [PubMed Central] [PubMed] [Related articles]
23.	A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly. Walfridsson J, Khorosjutina O, Matikainen P, Gustafsson CM, Ekwall K EMBO J 2007 Jun 20, 26:2868-79 [PubMed Central] [PubMed] [Related articles]
24.	DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes. Rippe K, Schrader A, Riede P, Strohner R, Lehmann E, Längst G Proc Natl Acad Sci U S A 2007 Oct 2, 104:15635-40 [PubMed Central] [PubMed] [Related articles]
25.	Evidence that the localization of the elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae. Duina AA, Rufiange A, Bracey J, Hall J, Nourani A, Winston F Genetics 2007 Sep, 177:101-12 [PubMed Central] [PubMed] [Related articles]
26.	Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD Cell 2005 Oct 21, 123:233-48 [PubMed Central] [PubMed] [Related articles]
27.	Histone chaperones regulate histone exchange during transcription. Kim HJ, Seol JH, Han JW, Youn HD, Cho EJ EMBO J 2007 Oct 31, 26:4467-74 [PubMed Central] [PubMed] [Related articles]
28.	Chromatin disassembly from the PHO5 promoter is essential for the recruitment of the general transcription machinery and coactivators. Adkins MW, Williams SK, Linger J, Tyler JK Mol Cell Biol 2007 Sep, 27:6372-82 [PubMed Central] [PubMed] [Related articles]
29.	Sequence-dependent variations associated with H2A/H2B depletion of nucleosomes. Kelbauskas L, Chan N, Bash R, DeBartolo P, Sun J, Woodbury N, Lohr D Biophys J 2008 Jan 1, 94:147-58 [PubMed Central] [PubMed] [Related articles]
30.	Hmo1 is required for TOR-dependent regulation of ribosomal protein gene transcription. Berger AB, Decourty L, Badis G, Nehrbass U, Jacquier A, Gadal O Mol Cell Biol 2007 Nov, 27:8015-26 [PubMed Central] [PubMed] [Related articles]
31.	Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae. Pham H, Ferrari R, Cokus SJ, Kurdistani SK, Pellegrini M Mol Syst Biol 2007, 3:153 [PubMed Central] [PubMed] [Related articles]
32.	Genomic sequence is highly predictive of local nucleosome depletion. Yuan GC, Liu JS PLoS Comput Biol 2008 Jan, 4:e13 [PubMed Central] [PubMed] [Related articles]
33.	* Unable to retrieve article 18225943 * [PubMed Central] [PubMed] [Related articles]
34.	Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones. Yasuhara JC, Wakimoto BT PLoS Genet 2008 Jan, 4:e16 [PubMed Central] [PubMed] [Related articles]
35.	* Unable to retrieve article 18208336 * [PubMed Central] [PubMed] [Related articles]
36.	Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae. Hershman SG, Chen Q, Lee JY, Kozak ML, Yue P, Wang LS, Johnson FB Nucleic Acids Res 2008 Jan, 36:144-56 [PubMed Central] [PubMed] [Related articles]
37.	Spn1 regulates the recruitment of Spt6 and the Swi/Snf complex during transcriptional activation by RNA polymerase II. Zhang L, Fletcher AG, Cheung V, Winston F, Stargell LA Mol Cell Biol 2008 Feb, 28:1393-403 [PubMed Central] [PubMed] [Related articles]
38.	Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. Shivaswamy S, Bhinge A, Zhao Y, Jones S, Hirst M, Iyer VR PLoS Biol 2008 Mar 18, 6:e65 [PubMed Central] [PubMed] [Related articles]
39.	* Unable to retrieve article 18351804 * [PubMed Central] [PubMed] [Related articles]
40.	Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response. Shivaswamy S, Iyer VR Mol Cell Biol 2008 Apr, 28:2221-34 [PubMed Central] [PubMed] [Related articles]
41.	Cell cycle-dependent nucleosome occupancy at cohesin binding sites in yeast chromosomes. Liu J, Czajkowsky DM, Liang S, Shao Z Genomics 2008 Mar, 91:274-80 [PubMed Central] [PubMed] [Related articles]
42.	The transcriptional repressor activator protein Rap1p is a direct regulator of TATA-binding protein. Bendjennat M, Weil PA J Biol Chem 2008 Mar 28, 283:8699-710 [PubMed Central] [PubMed] [Related articles]
43.	* Unable to retrieve article 18195009 * [PubMed Central] [PubMed] [Related articles]
44.	H2A.Z-Mediated Genome-Wide Chromatin Specialization. Eirín-López J, Ausió J Curr Genomics 2007 Mar, 8:59-66 [PubMed Central] [PubMed] [Related articles]
45.	Spontaneous access to DNA target sites in folded chromatin fibers. Poirier MG, Bussiek M, Langowski J, Widom J J Mol Biol 2008 Jun 13, 379:772-86 [PubMed Central] [PubMed] [Related articles]
46.	A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Mavrich TN, Ioshikhes IP, Venters BJ, Jiang C, Tomsho LP, Qi J, Schuster SC, Albert I, Pugh BF Genome Res 2008 Jul, 18:1073-83 [PubMed Central] [PubMed] [Related articles]
47.	Predicting human nucleosome occupancy from primary sequence. Gupta S, Dennis J, Thurman RE, Kingston R, Stamatoyannopoulos JA, Noble WS PLoS Comput Biol 2008, 4:e1000134 [PubMed Central] [PubMed] [Related articles]
48.	The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis. Whittle CM, McClinic KN, Ercan S, Zhang X, Green RD, Kelly WG, Lieb JD PLoS Genet 2008, 4:e1000187 [PubMed Central] [PubMed] [Related articles]
49.	Extensive chromatin fragmentation improves enrichment of protein binding sites in chromatin immunoprecipitation experiments. Fan X, Lamarre-Vincent N, Wang Q, Struhl K Nucleic Acids Res 2008 Nov, 36:e125 [PubMed Central] [PubMed] [Related articles]
50.	A novel DNA sequence periodicity decodes nucleosome positioning. Chen K, Meng Q, Ma L, Liu Q, Tang P, Chiu C, Hu S, Yu J Nucleic Acids Res 2008 Nov, 36:6228-36 [PubMed Central] [PubMed] [Related articles]
51.	In vivo veritas: using yeast to probe the biological functions of G-quadruplexes. Johnson JE, Smith JS, Kozak ML, Johnson FB Biochimie 2008 Aug, 90:1250-63 [PubMed Central] [PubMed] [Related articles]
52.	Histone modifications, but not nucleosomal positioning, correlate with major histocompatibility complex class I promoter activity in different tissues in vivo. Kotekar AS, Weissman JD, Gegonne A, Cohen H, Singer DS Mol Cell Biol 2008 Dec, 28:7323-36 [PubMed Central] [PubMed] [Related articles]
53.	A genomic code for nucleosome positioning. Segal E, Fondufe-Mittendorf Y, Chen L, Thåström A, Field Y, Moore IK, Wang JP, Widom J Nature 2006 Aug 17, 442:772-8 [PubMed Central] [PubMed] [Related articles]
54.	Dissecting nucleosome free regions by a segmental semi-Markov model. Sun W, Xie W, Xu F, Grunstein M, Li KC PLoS One 2009, 4:e4721 [PubMed Central] [PubMed] [Related articles]
55.	Dynamic histone variant exchange accompanies gene induction in T cells. Sutcliffe EL, Parish IA, He YQ, Juelich T, Tierney ML, Rangasamy D, Milburn PJ, Parish CR, Tremethick DJ, Rao S Mol Cell Biol 2009 Apr, 29:1972-86 [PubMed Central] [PubMed] [Related articles]
56.	Nucleosome eviction from MHC class II promoters controls positioning of the transcription start site. Leimgruber E, Seguín-Estévez Q, Dunand-Sauthier I, Rybtsova N, Schmid CD, Ambrosini G, Bucher P, Reith W Nucleic Acids Res 2009 May, 37:2514-28 [PubMed Central] [PubMed] [Related articles]
57.	Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells. McGarvey KM, Van Neste L, Cope L, Ohm JE, Herman JG, Van Criekinge W, Schuebel KE, Baylin SB Cancer Res 2008 Jul 15, 68:5753-9 [PubMed Central] [PubMed] [Related articles]
58.	Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Ward LD, Bussemaker HJ Bioinformatics 2008 Jul 1, 24:i165-71 [PubMed Central] [PubMed] [Related articles]
59.	Applying whole-genome studies of epigenetic regulation to study human disease. Lieb JD, Beck S, Bulyk ML, Farnham P, Hattori N, Henikoff S, Liu XS, Okumura K, Shiota K, Ushijima T, Greally JM Cytogenet Genome Res 2006, 114:1-15 [PubMed Central] [PubMed] [Related articles]
60.	Remodeling of chromatin structure in senescent cells and its potential impact on tumor suppression and aging. Adams PD Gene 2007 Aug 1, 397:84-93 [PubMed Central] [PubMed] [Related articles]

This article is also cited by 8 articles in BioMed Central

You can also check ISI Web of Science for additional citations (subscription required)

printer friendly

to [Help]

Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us