Log on / register
Feedback | Support | My details
MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
Edgar RC
BMC Bioinformatics 2004 Aug 19, 5:113
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

PubMed Central articles that cite the above article:

1.
MAFFT version 5: improvement in accuracy of multiple sequence alignment.
Katoh K, Kuma K, Toh H, Miyata T
Nucleic Acids Res 2005, 33:511-8
[PubMed Central] [PubMed] [Related articles]

2.
Comparative mitochondrial genomics in zygomycetes: bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms.
Seif E, Leigh J, Liu Y, Roewer I, Forget L, Lang BF
Nucleic Acids Res 2005, 33:734-44
[PubMed Central] [PubMed] [Related articles]

3.
Carbohydrate-active enzymes involved in the secondary cell wall biogenesis in hybrid aspen.
Aspeborg H, Schrader J, Coutinho PM, Stam M, Kallas A, Djerbi S, Nilsson P, Denman S, Amini B, Sterky F, Master E, Sandberg G, Mellerowicz E, Sundberg B, Henrissat B, Teeri TT
Plant Physiol 2005 Mar, 137:983-97
[PubMed Central] [PubMed] [Related articles]

4.
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members.
Iyer LM, Koonin EV, Leipe DD, Aravind L
Nucleic Acids Res 2005, 33:3875-96
[PubMed Central] [PubMed] [Related articles]

5.
Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains.
Balaji S, Babu MM, Iyer LM, Aravind L
Nucleic Acids Res 2005, 33:3994-4006
[PubMed Central] [PubMed] [Related articles]

6.
An algorithm for progressive multiple alignment of sequences with insertions.
Löytynoja A, Goldman N
Proc Natl Acad Sci U S A 2005 Jul 26, 102:10557-62
[PubMed Central] [PubMed] [Related articles]

7.
Amylomaltase of Pyrobaculum aerophilum IM2 produces thermoreversible starch gels.
Kaper T, Talik B, Ettema TJ, Bos H, van der Maarel MJ, Dijkhuizen L
Appl Environ Microbiol 2005 Sep, 71:5098-106
[PubMed Central] [PubMed] [Related articles]

8.
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs).
Rausch C, Weber T, Kohlbacher O, Wohlleben W, Huson DH
Nucleic Acids Res 2005, 33:5799-808
[PubMed Central] [PubMed] [Related articles]

9.
Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design.
Cheng G, Qian B, Samudrala R, Baker D
Nucleic Acids Res 2005, 33:5861-7
[PubMed Central] [PubMed] [Related articles]

10.
Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance.
Omelchenko MV, Wolf YI, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Daly MJ, Koonin EV, Makarova KS
BMC Evol Biol 2005, 5:57
[PubMed Central] [PubMed] [Related articles]

11.
Gene3D: modelling protein structure, function and evolution.
Yeats C, Maibaum M, Marsden R, Dibley M, Lee D, Addou S, Orengo CA
Nucleic Acids Res 2006 Jan 1, 34:D281-4
[PubMed Central] [PubMed] [Related articles]

12.
MEROPS: the peptidase database.
Rawlings ND, Morton FR, Barrett AJ
Nucleic Acids Res 2006 Jan 1, 34:D270-2
[PubMed Central] [PubMed] [Related articles]

13.
TreeFam: a curated database of phylogenetic trees of animal gene families.
Li H, Coghlan A, Ruan J, Coin LJ, Hériché JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, Dehal P, Wang J, Durbin R
Nucleic Acids Res 2006 Jan 1, 34:D572-80
[PubMed Central] [PubMed] [Related articles]

14.
The tmRDB and SRPDB resources.
Andersen ES, Rosenblad MA, Larsen N, Westergaard JC, Burks J, Wower IK, Wower J, Gorodkin J, Samuelsson T, Zwieb C
Nucleic Acids Res 2006 Jan 1, 34:D163-8
[PubMed Central] [PubMed] [Related articles]

15.
ZNF674: a new kruppel-associated box-containing zinc-finger gene involved in nonsyndromic X-linked mental retardation.
Lugtenberg D, Yntema HG, Banning MJ, Oudakker AR, Firth HV, Willatt L, Raynaud M, Kleefstra T, Fryns JP, Ropers HH, Chelly J, Moraine C, Gecz J, van Reeuwijk J, Nabuurs SB, de Vries BB, Hamel BC, de Brouwer AP, van Bokhoven H
Am J Hum Genet 2006 Feb, 78:265-78
[PubMed Central] [PubMed] [Related articles]

16.
The dictyostelium kinome--analysis of the protein kinases from a simple model organism.
Goldberg JM, Manning G, Liu A, Fey P, Pilcher KE, Xu Y, Smith JL
PLoS Genet 2006 Mar, 2:e38
[PubMed Central] [PubMed] [Related articles]

17.
MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins.
Mukherjee K, Bürglin TR
Plant Physiol 2006 Apr, 140:1142-50
[PubMed Central] [PubMed] [Related articles]

18.
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens.
Ogata H, La Scola B, Audic S, Renesto P, Blanc G, Robert C, Fournier PE, Claverie JM, Raoult D
PLoS Genet 2006 May, 2:e76
[PubMed Central] [PubMed] [Related articles]

19.
*** Unable to retrieve article 16703114 ***

[PubMed Central] [PubMed] [Related articles]

20.
Widespread genome duplications throughout the history of flowering plants.
Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA, Ma H, dePamphilis CW
Genome Res 2006 Jun, 16:738-49
[PubMed Central] [PubMed] [Related articles]

21.
Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits.
Dessimoz C, Boeckmann B, Roth AC, Gonnet GH
Nucleic Acids Res 2006, 34:3309-16
[PubMed Central] [PubMed] [Related articles]

22.
Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer.
Lin Z, Kong H, Nei M, Ma H
Proc Natl Acad Sci U S A 2006 Jul 5, 103:10328-33
[PubMed Central] [PubMed] [Related articles]

23.
Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases.
Rai R, Mushegian A, Makarova K, Kashina A
EMBO Rep 2006 Aug, 7:800-5
[PubMed Central] [PubMed] [Related articles]

24.
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
Lassmann T, Sonnhammer EL
Nucleic Acids Res 2006 Jul 1, 34:W596-9
[PubMed Central] [PubMed] [Related articles]

25.
In vitro generation of human high-density-lipoprotein-resistant Trypanosoma brucei brucei.
Faulkner SD, Oli MW, Kieft R, Cotlin L, Widener J, Shiflett A, Cipriano MJ, Pacocha SE, Birkeland SR, Hajduk SL, McArthur AG
Eukaryot Cell 2006 Aug, 5:1276-86
[PubMed Central] [PubMed] [Related articles]

26.
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.
Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E
PLoS Biol 2006 Sep, 4:e286
[PubMed Central] [PubMed] [Related articles]

27.
Microbial diversity in the deep sea and the underexplored "rare biosphere".
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ
Proc Natl Acad Sci U S A 2006 Aug 8, 103:12115-20
[PubMed Central] [PubMed] [Related articles]

28.
*** Unable to retrieve article 16933976 ***

[PubMed Central] [PubMed] [Related articles]

29.
The many faces of protein-protein interactions: A compendium of interface geometry.
Kim WK, Henschel A, Winter C, Schroeder M
PLoS Comput Biol 2006 Sep 29, 2:e124
[PubMed Central] [PubMed] [Related articles]

30.
Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.
Jothi R, Cherukuri PF, Tasneem A, Przytycka TM
J Mol Biol 2006 Sep 29, 362:861-75
[PubMed Central] [PubMed] [Related articles]

31.
The evolution of two-component systems in bacteria reveals different strategies for niche adaptation.
Alm E, Huang K, Arkin A
PLoS Comput Biol 2006 Nov 3, 2:e143
[PubMed Central] [PubMed] [Related articles]

32.
Structural and functional analysis of the MutS C-terminal tetramerization domain.
Manelyte L, Urbanke C, Giron-Monzon L, Friedhoff P
Nucleic Acids Res 2006, 34:5270-9
[PubMed Central] [PubMed] [Related articles]

33.
*** Unable to retrieve article 17083272 ***

[PubMed Central] [PubMed] [Related articles]

34.
POGs/PlantRBP: a resource for comparative genomics in plants.
Walker NS, Stiffler N, Barkan A
Nucleic Acids Res 2007 Jan, 35:D852-6
[PubMed Central] [PubMed] [Related articles]

35.
PATRIC: the VBI PathoSystems Resource Integration Center.
Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, Hance M, Huntington KI, Jukneliene D, Koziski J, Mackasmiel L, Mane SP, Nguyen V, Purkayastha A, Shallom J, Yu G, Guo Y, Gabbard J, Hix D, Azad AF, Baker SC, Boyle SM, Khudyakov Y, Meng XJ, Rupprecht C, Vinje J, Crasta OR, Czar MJ, Dickerman A, Eckart JD, Kenyon R, Will R, Setubal JC, Sobral BW
Nucleic Acids Res 2007 Jan, 35:D401-6
[PubMed Central] [PubMed] [Related articles]

36.
Proteins of the glycine decarboxylase complex in the hydrogenosome of Trichomonas vaginalis.
Mukherjee M, Brown MT, McArthur AG, Johnson PJ
Eukaryot Cell 2006 Dec, 5:2062-71
[PubMed Central] [PubMed] [Related articles]

37.
Microevolution of cytochrome bd oxidase in Staphylococci and its implication in resistance to respiratory toxins released by Pseudomonas.
Voggu L, Schlag S, Biswas R, Rosenstein R, Rausch C, Götz F
J Bacteriol 2006 Dec, 188:8079-86
[PubMed Central] [PubMed] [Related articles]

38.
Kinase activity of overexpressed HipA is required for growth arrest and multidrug tolerance in Escherichia coli.
Correia FF, D'Onofrio A, Rejtar T, Li L, Karger BL, Makarova K, Koonin EV, Lewis K
J Bacteriol 2006 Dec, 188:8360-7
[PubMed Central] [PubMed] [Related articles]

39.
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.
Schlüter A, Fourcade S, Domènech-Estévez E, Gabaldón T, Huerta-Cepas J, Berthommier G, Ripp R, Wanders RJ, Poch O, Pujol A
Nucleic Acids Res 2007 Jan, 35:D815-22
[PubMed Central] [PubMed] [Related articles]

40.
Hypervariability within the Rifin, Stevor and Pfmc-2TM superfamilies in Plasmodium falciparum.
Lavazec C, Sanyal S, Templeton TJ
Nucleic Acids Res 2006, 34:6696-707
[PubMed Central] [PubMed] [Related articles]

41.
Ensembl 2007.
Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K, Howe K, Johnson N, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Melsopp C, Megy K, Meidl P, Ouverdin B, Parker A, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Severin J, Slater G, Smedley D, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wood M, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Flicek P, Kasprzyk A, Proctor G, Searle S, Smith J, Ureta-Vidal A, Birney E
Nucleic Acids Res 2007 Jan, 35:D610-7
[PubMed Central] [PubMed] [Related articles]

42.
POGs/PlantRBP: a resource for comparative genomics in plants.
Walker NS, Stiffler N, Barkan A
Nucleic Acids Res 2007 Jan, 35:D852-6
[PubMed Central] [PubMed] [Related articles]

43.
PATRIC: the VBI PathoSystems Resource Integration Center.
Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, Hance M, Huntington KI, Jukneliene D, Koziski J, Mackasmiel L, Mane SP, Nguyen V, Purkayastha A, Shallom J, Yu G, Guo Y, Gabbard J, Hix D, Azad AF, Baker SC, Boyle SM, Khudyakov Y, Meng XJ, Rupprecht C, Vinje J, Crasta OR, Czar MJ, Dickerman A, Eckart JD, Kenyon R, Will R, Setubal JC, Sobral BW
Nucleic Acids Res 2007 Jan, 35:D401-6
[PubMed Central] [PubMed] [Related articles]

44.
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.
Schlüter A, Fourcade S, Domènech-Estévez E, Gabaldón T, Huerta-Cepas J, Berthommier G, Ripp R, Wanders RJ, Poch O, Pujol A
Nucleic Acids Res 2007 Jan, 35:D815-22
[PubMed Central] [PubMed] [Related articles]

45.
*** Unable to retrieve article 17148474 ***

[PubMed Central] [PubMed] [Related articles]

46.
Plasmids and rickettsial evolution: insight from Rickettsia felis.
Gillespie JJ, Beier MS, Rahman MS, Ammerman NC, Shallom JM, Purkayastha A, Sobral BS, Azad AF
PLoS ONE 2007, 2:e266
[PubMed Central] [PubMed] [Related articles]

47.
Hypervariability within the Rifin, Stevor and Pfmc-2TM superfamilies in Plasmodium falciparum.
Lavazec C, Sanyal S, Templeton TJ
Nucleic Acids Res 2006, 34:6696-707
[PubMed Central] [PubMed] [Related articles]

48.
Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution.
Shih AC, Hsiao TC, Ho MS, Li WH
Proc Natl Acad Sci U S A 2007 Apr 10, 104:6283-8
[PubMed Central] [PubMed] [Related articles]

49.
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins.
Richardt S, Lang D, Reski R, Frank W, Rensing SA
Plant Physiol 2007 Apr, 143:1452-66
[PubMed Central] [PubMed] [Related articles]

50.
Loss of a universal tRNA feature.
Wang C, Sobral BW, Williams KP
J Bacteriol 2007 Mar, 189:1954-62
[PubMed Central] [PubMed] [Related articles]

51.
A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides.
Poggio S, Abreu-Goodger C, Fabela S, Osorio A, Dreyfus G, Vinuesa P, Camarena L
J Bacteriol 2007 Apr, 189:3208-16
[PubMed Central] [PubMed] [Related articles]

52.
New tick defensin isoform and antimicrobial gene expression in response to Rickettsia montanensis challenge.
Ceraul SM, Dreher-Lesnick SM, Gillespie JJ, Rahman MS, Azad AF
Infect Immun 2007 Apr, 75:1973-83
[PubMed Central] [PubMed] [Related articles]

53.
Structure and evolutionary origin of Ca2+-dependent herring type II antifreeze protein.
Liu Y, Li Z, Lin Q, Kosinski J, Seetharaman J, Bujnicki JM, Sivaraman J, Hew CL
PLoS ONE 2007, 2:e548
[PubMed Central] [PubMed] [Related articles]

54.
INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events.
Chen FC, Chen CJ, Chuang TJ
Nucleic Acids Res 2007 Jul, 35:W633-8
[PubMed Central] [PubMed] [Related articles]

55.
The SLiMDisc server: short, linear motif discovery in proteins.
Davey NE, Edwards RJ, Shields DC
Nucleic Acids Res 2007 Jul, 35:W455-9
[PubMed Central] [PubMed] [Related articles]

56.
M4T: a comparative protein structure modeling server.
Fernandez-Fuentes N, Madrid-Aliste CJ, Rai BK, Fajardo JE, Fiser A
Nucleic Acids Res 2007 Jul, 35:W363-8
[PubMed Central] [PubMed] [Related articles]

57.
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.
Glanville JG, Kirshner D, Krishnamurthy N, Sjölander K
Nucleic Acids Res 2007 Jul, 35:W27-32
[PubMed Central] [PubMed] [Related articles]

58.
COMPASS server for remote homology inference.
Sadreyev RI, Tang M, Kim BH, Grishin NV
Nucleic Acids Res 2007 Jul, 35:W653-8
[PubMed Central] [PubMed] [Related articles]

59.
Selection against spurious promoter motifs correlates with translational efficiency across bacteria.
Froula JL, Francino MP
PLoS ONE 2007, 2:e745
[PubMed Central] [PubMed] [Related articles]

60.
Unique genes in giant viruses: regular substitution pattern and anomalously short size.
Ogata H, Claverie JM
Genome Res 2007 Sep, 17:1353-61
[PubMed Central] [PubMed] [Related articles]

61.
An elaborate classification of SNARE proteins sheds light on the conservation of the eukaryotic endomembrane system.
Kloepper TH, Kienle CN, Fasshauer D
Mol Biol Cell 2007 Sep, 18:3463-71
[PubMed Central] [PubMed] [Related articles]

62.
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota.
Stecher B, Robbiani R, Walker AW, Westendorf AM, Barthel M, Kremer M, Chaffron S, Macpherson AJ, Buer J, Parkhill J, Dougan G, von Mering C, Hardt WD
PLoS Biol 2007 Oct, 5:2177-89
[PubMed Central] [PubMed] [Related articles]

63.
Discovery of a thermophilic protein complex stabilized by topologically interlinked chains.
Boutz DR, Cascio D, Whitelegge J, Perry LJ, Yeates TO
J Mol Biol 2007 May 18, 368:1332-44
[PubMed Central] [PubMed] [Related articles]

64.
Recent evolutions of multiple sequence alignment algorithms.
Notredame C
PLoS Comput Biol 2007 Aug, 3:e123
[PubMed Central] [PubMed] [Related articles]

65.
*** Unable to retrieve article 17760501 ***

[PubMed Central] [PubMed] [Related articles]

66.
Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases.
Lemberg MK, Freeman M
Genome Res 2007 Nov, 17:1634-46
[PubMed Central] [PubMed] [Related articles]

67.
From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism.
Gabaldón T, Huynen MA
PLoS Comput Biol 2007 Nov, 3:e219
[PubMed Central] [PubMed] [Related articles]

68.
Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets.
Heiny AT, Miotto O, Srinivasan KN, Khan AM, Zhang GL, Brusic V, Tan TW, August JT
PLoS ONE 2007, 2:e1190
[PubMed Central] [PubMed] [Related articles]

69.
*** Unable to retrieve article 17983265 ***

[PubMed Central] [PubMed] [Related articles]

70.
Genome evolution and the emergence of fruiting body development in Myxococcus xanthus.
Goldman B, Bhat S, Shimkets LJ
PLoS ONE 2007, 2:e1329
[PubMed Central] [PubMed] [Related articles]

71.
Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS.
Abergel C, Rudinger-Thirion J, Giegé R, Claverie JM
J Virol 2007 Nov, 81:12406-17
[PubMed Central] [PubMed] [Related articles]

72.
Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum.
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, Torriani SF, McDonald BA, Oliver RP
Plant Cell 2007 Nov, 19:3347-68
[PubMed Central] [PubMed] [Related articles]

73.
The origins and early evolution of DNA mismatch repair genes--multiple horizontal gene transfers and co-evolution.
Lin Z, Nei M, Ma H
Nucleic Acids Res 2007, 35:7591-603
[PubMed Central] [PubMed] [Related articles]

74.
Conservation of the chitin utilization pathway in the Vibrionaceae.
Hunt DE, Gevers D, Vahora NM, Polz MF
Appl Environ Microbiol 2008 Jan, 74:44-51
[PubMed Central] [PubMed] [Related articles]

75.
Outer membrane protein sequence variation in lambs experimentally infected with Anaplasma phagocytophilum.
Granquist EG, Stuen S, Lundgren AM, Bråten M, Barbet AF
Infect Immun 2008 Jan, 76:120-6
[PubMed Central] [PubMed] [Related articles]

76.
Role of hypermutability in the evolution of the genus Oenococcus.
Marcobal AM, Sela DA, Wolf YI, Makarova KS, Mills DA
J Bacteriol 2008 Jan, 190:564-70
[PubMed Central] [PubMed] [Related articles]

77.
Aspergillus mycoviruses are targets and suppressors of RNA silencing.
Hammond TM, Andrewski MD, Roossinck MJ, Keller NP
Eukaryot Cell 2008 Feb, 7:350-7
[PubMed Central] [PubMed] [Related articles]

78.
RNA silencing gene truncation in the filamentous fungus Aspergillus nidulans.
Hammond TM, Bok JW, Andrewski MD, Reyes-Domínguez Y, Scazzocchio C, Keller NP
Eukaryot Cell 2008 Feb, 7:339-49
[PubMed Central] [PubMed] [Related articles]

79.
MEROPS: the peptidase database.
Rawlings ND, Morton FR, Kok CY, Kong J, Barrett AJ
Nucleic Acids Res 2008 Jan, 36:D320-5
[PubMed Central] [PubMed] [Related articles]

80.
TreeFam: 2008 Update.
Ruan J, Li H, Chen Z, Coghlan A, Coin LJ, Guo Y, Hériché JK, Hu Y, Kristiansen K, Li R, Liu T, Moses A, Qin J, Vang S, Vilella AJ, Ureta-Vidal A, Bolund L, Wang J, Durbin R
Nucleic Acids Res 2008 Jan, 36:D735-40
[PubMed Central] [PubMed] [Related articles]

81.
PhylomeDB: a database for genome-wide collections of gene phylogenies.
Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T
Nucleic Acids Res 2008 Jan, 36:D491-6
[PubMed Central] [PubMed] [Related articles]

82.
OrthoDB: the hierarchical catalog of eukaryotic orthologs.
Kriventseva EV, Rahman N, Espinosa O, Zdobnov EM
Nucleic Acids Res 2008 Jan, 36:D271-5
[PubMed Central] [PubMed] [Related articles]

83.
A common virulence plasmid in biotype 2 Vibrio vulnificus and its dissemination aided by a conjugal plasmid.
Lee CT, Amaro C, Wu KM, Valiente E, Chang YF, Tsai SF, Chang CH, Hor LI
J Bacteriol 2008 Mar, 190:1638-48
[PubMed Central] [PubMed] [Related articles]

84.
Myosin XI-K Is required for rapid trafficking of Golgi stacks, peroxisomes, and mitochondria in leaf cells of Nicotiana benthamiana.
Avisar D, Prokhnevsky AI, Makarova KS, Koonin EV, Dolja VV
Plant Physiol 2008 Mar, 146:1098-108
[PubMed Central] [PubMed] [Related articles]

85.
Domain annotation of trimeric autotransporter adhesins--daTAA.
Szczesny P, Lupas A
Bioinformatics 2008 May 15, 24:1251-6
[PubMed Central] [PubMed] [