BioMed Central | Articles which cite: The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

Log on / register
Feedback | Support | My details

home journals A-Z subject areas advanced search authors reviewers libraries about my BioMed Central

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Müller KM, Pande N, Shang Z, Yu N, Gutell RR
BMC Bioinformatics 2002, 3:2
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]

printer friendly

to [Help]

PubMed Central articles that cite the above article:

1.	Discovery of RNA structural elements using evolutionary computation. Fogel GB, Porto VW, Weekes DG, Fogel DB, Griffey RH, McNeil JA, Lesnik E, Ecker DJ, Sampath R Nucleic Acids Res 2002 Dec 1, 30:5310-7 [PubMed Central] [PubMed] [Related articles]
2.	Mechanism of Tet(O)-mediated tetracycline resistance. Connell SR, Trieber CA, Dinos GP, Einfeldt E, Taylor DE, Nierhaus KH EMBO J 2003 Feb 17, 22:945-53 [PubMed Central] [PubMed] [Related articles]
3.	Specific detection of Dehalococcoides species by fluorescence in situ hybridization with 16S rRNA-targeted oligonucleotide probes. Yang Y, Zeyer J Appl Environ Microbiol 2003 May, 69:2879-83 [PubMed Central] [PubMed] [Related articles]
4.	Rfam: an RNA family database. Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR Nucleic Acids Res 2003 Jan 1, 31:439-41 [PubMed Central] [PubMed] [Related articles]
5.	A software tool-box for analysis of regulatory RNA elements. Bengert P, Dandekar T Nucleic Acids Res 2003 Jul 1, 31:3441-5 [PubMed Central] [PubMed] [Related articles]
6.	Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit? Behrens S, Fuchs BM, Mueller F, Amann R Appl Environ Microbiol 2003 Aug, 69:4935-41 [PubMed Central] [PubMed] [Related articles]
7.	Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea). Stoeck T, Taylor GT, Epstein SS Appl Environ Microbiol 2003 Sep, 69:5656-63 [PubMed Central] [PubMed] [Related articles]
8.	Active self-splicing group I introns in 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles. Nesbø CL, Doolittle WF Proc Natl Acad Sci U S A 2003 Sep 16, 100:10806-11 [PubMed Central] [PubMed] [Related articles]
9.	The common and the distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure. Correll CC, Beneken J, Plantinga MJ, Lubbers M, Chan YL Nucleic Acids Res 2003 Dec 1, 31:6806-18 [PubMed Central] [PubMed] [Related articles]
10.	Distinct sites of phosphorothioate substitution interfere with folding and splicing of the Anabaena group I intron. Lupták A, Doudna JA Nucleic Acids Res 2004, 32:2272-80 [PubMed Central] [PubMed] [Related articles]
11.	Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns. Klosterman PS, Hendrix DK, Tamura M, Holbrook SR, Brenner SE Nucleic Acids Res 2004, 32:2342-52 [PubMed Central] [PubMed] [Related articles]
12.	Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme. Karginov FV, Uhlenbeck OC Nucleic Acids Res 2004, 32:3028-32 [PubMed Central] [PubMed] [Related articles]
13.	Thiostrepton-resistant mutants of Thermus thermophilus. Cameron DM, Thompson J, Gregory ST, March PE, Dahlberg AE Nucleic Acids Res 2004, 32:3220-7 [PubMed Central] [PubMed] [Related articles]
14.	"Candidatus Endobugula glebosa," a specific bacterial symbiont of the marine bryozoan Bugula simplex. Lim GE, Haygood MG Appl Environ Microbiol 2004 Aug, 70:4921-9 [PubMed Central] [PubMed] [Related articles]
15.	Ketolide antimicrobial activity persists after disruption of interactions with domain II of 23S rRNA. Novotny GW, Jakobsen L, Andersen NM, Poehlsgaard J, Douthwaite S Antimicrob Agents Chemother 2004 Oct, 48:3677-83 [PubMed Central] [PubMed] [Related articles]
16.	The A2453-C2499 wobble base pair in Escherichia coli 23S ribosomal RNA is responsible for pH sensitivity of the peptidyltransferase active site conformation. Bayfield MA, Thompson J, Dahlberg AE Nucleic Acids Res 2004, 32:5512-8 [PubMed Central] [PubMed] [Related articles]
17.	Testing the conservation of the translational machinery over evolution in diverse environments: assaying Thermus thermophilus ribosomes and initiation factors in a coupled transcription-translation system from Escherichia coli. Thompson J, Dahlberg AE Nucleic Acids Res 2004, 32:5954-61 [PubMed Central] [PubMed] [Related articles]
18.	Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. Diezmann S, Cox CJ, Schönian G, Vilgalys RJ, Mitchell TG J Clin Microbiol 2004 Dec, 42:5624-35 [PubMed Central] [PubMed] [Related articles]
19.	The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM Nucleic Acids Res 2005 Jan 1, 33:D294-6 [PubMed Central] [PubMed] [Related articles]
20.	A 16S rRNA-tRNA product containing a nucleotide phototrimer and specific for tRNA in the P/E hybrid state in the Escherichia coli ribosome. Huggins W, Wollenzien P Nucleic Acids Res 2004, 32:6548-56 [PubMed Central] [PubMed] [Related articles]
21.	The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery. Wadley LM, Pyle AM Nucleic Acids Res 2004, 32:6650-9 [PubMed Central] [PubMed] [Related articles]
22.	X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit. Wilson DN, Schluenzen F, Harms JM, Yoshida T, Ohkubo T, Albrecht R, Buerger J, Kobayashi Y, Fucini P EMBO J 2005 Jan 26, 24:251-60 [PubMed Central] [PubMed] [Related articles]
23.	Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs. Pasquali S, Gan HH, Schlick T Nucleic Acids Res 2005, 33:1384-98 [PubMed Central] [PubMed] [Related articles]
24.	Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup. Li Z, Zhang Y Nucleic Acids Res 2005, 33:2118-28 [PubMed Central] [PubMed] [Related articles]
25.	The recent transfer of a homing endonuclease gene. Haugen P, Wikmark OG, Vader A, Coucheron DH, Sjøttem E, Johansen SD Nucleic Acids Res 2005, 33:2734-41 [PubMed Central] [PubMed] [Related articles]
26.	Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Ivanova N, Pavlov MY, Bouakaz E, Ehrenberg M, Schiavone LH Nucleic Acids Res 2005, 33:3529-39 [PubMed Central] [PubMed] [Related articles]
27.	Mutational analysis of 16S and 23S rRNA genes of Thermus thermophilus. Gregory ST, Carr JF, Rodriguez-Correa D, Dahlberg AE J Bacteriol 2005 Jul, 187:4804-12 [PubMed Central] [PubMed] [Related articles]
28.	The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components. Gao H, Ayub MJ, Levin MJ, Frank J Proc Natl Acad Sci U S A 2005 Jul 19, 102:10206-11 [PubMed Central] [PubMed] [Related articles]
29.	Constraining ribosomal RNA conformational space. Favaretto P, Bhutkar A, Smith TF Nucleic Acids Res 2005, 33:5106-11 [PubMed Central] [PubMed] [Related articles]
30.	Simulating movement of tRNA into the ribosome during decoding. Sanbonmatsu KY, Joseph S, Tung CS Proc Natl Acad Sci U S A 2005 Nov 1, 102:15854-9 [PubMed Central] [PubMed] [Related articles]
31.	Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics. Yassin A, Fredrick K, Mankin AS Proc Natl Acad Sci U S A 2005 Nov 15, 102:16620-5 [PubMed Central] [PubMed] [Related articles]
32.	Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit. Schmeing TM, Moore PB, Steitz TA RNA 2003 Nov, 9:1345-52 [PubMed Central] [PubMed] [Related articles]
33.	Investigation of Oscillatoria spongeliae-dominated bacterial communities in four dictyoceratid sponges. Ridley CP, John Faulkner D, Haygood MG Appl Environ Microbiol 2005 Nov, 71:7366-75 [PubMed Central] [PubMed] [Related articles]
34.	Physiology and phylogeny of green sulfur bacteria forming a monospecific phototrophic assemblage at a depth of 100 meters in the Black Sea. Manske AK, Glaeser J, Kuypers MM, Overmann J Appl Environ Microbiol 2005 Dec, 71:8049-60 [PubMed Central] [PubMed] [Related articles]
35.	Extensive variation in intracellular symbiont community composition among members of a single population of the wood-boring bivalve Lyrodus pedicellatus (Bivalvia: Teredinidae). Luyten YA, Thompson JR, Morrill W, Polz MF, Distel DL Appl Environ Microbiol 2006 Jan, 72:412-7 [PubMed Central] [PubMed] [Related articles]
36.	Mutations conferring aminoglycoside and spectinomycin resistance in Borrelia burgdorferi. Criswell D, Tobiason VL, Lodmell JS, Samuels DS Antimicrob Agents Chemother 2006 Feb, 50:445-52 [PubMed Central] [PubMed] [Related articles]
37.	A possible tertiary rRNA interaction between expansion segments ES3 and ES6 in eukaryotic 40S ribosomal subunits. Alkemar G, Nygård O RNA 2003 Jan, 9:20-4 [PubMed Central] [PubMed] [Related articles]
38.	Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice. Koduvayur SP, Woodson SA RNA 2004 Oct, 10:1526-32 [PubMed Central] [PubMed] [Related articles]
39.	Assembly of the 30S ribosomal subunit: positioning ribosomal protein S13 in the S7 assembly branch. Grondek JF, Culver GM RNA 2004 Dec, 10:1861-6 [PubMed Central] [PubMed] [Related articles]
40.	The application of cluster analysis in the intercomparison of loop structures in RNA. Huang HC, Nagaswamy U, Fox GE RNA 2005 Apr, 11:412-23 [PubMed Central] [PubMed] [Related articles]
41.	Protein content of minimal and ancestral ribosome. Mushegian A RNA 2005 Sep, 11:1400-6 [PubMed Central] [PubMed] [Related articles]
42.	Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA. Sumita M, Desaulniers JP, Chang YC, Chui HM, Clos L, Chow CS RNA 2005 Sep, 11:1420-9 [PubMed Central] [PubMed] [Related articles]
43.	Are stop codons recognized by base triplets in the large ribosomal RNA subunit? Liang H, Landweber LF, Fresco JR RNA 2005 Oct, 11:1478-84 [PubMed Central] [PubMed] [Related articles]
44.	Solution probing of metal ion binding by helix 27 from Escherichia coli 16S rRNA. Lambert MN, Hoerter JA, Pereira MJ, Walter NG RNA 2005 Nov, 11:1688-700 [PubMed Central] [PubMed] [Related articles]
45.	Accessibility of 18S rRNA in human 40S subunits and 80S ribosomes at physiological magnesium ion concentrations--implications for the study of ribosome dynamics. Shenvi CL, Dong KC, Friedman EM, Hanson JA, Cate JH RNA 2005 Dec, 11:1898-908 [PubMed Central] [PubMed] [Related articles]
46.	Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories. Smit S, Yarus M, Knight R RNA 2006 Jan, 12:1-14 [PubMed Central] [PubMed] [Related articles]
47.	Secondary structure of two regions in expansion segments ES3 and ES6 with the potential of forming a tertiary interaction in eukaryotic 40S ribosomal subunits. Alkemar G, Nygård O RNA 2004 Mar, 10:403-11 [PubMed Central] [PubMed] [Related articles]
48.	Statistical and Bayesian approaches to RNA secondary structure prediction. Ding Y RNA 2006 Mar, 12:323-31 [PubMed Central] [PubMed] [Related articles]
49.	Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme. Guo F, Gooding AR, Cech TR RNA 2006 Mar, 12:387-95 [PubMed Central] [PubMed] [Related articles]
50.	Structural and evolutionary classification of G/U wobble basepairs in the ribosome. Mokdad A, Krasovska MV, Sponer J, Leontis NB Nucleic Acids Res 2006, 34:1326-41 [PubMed Central] [PubMed] [Related articles]
51.	Mg2+-induced compaction of single RNA molecules monitored by tethered particle microscopy. Newby Lambert M, Vöcker E, Blumberg S, Redemann S, Gajraj A, Meiners JC, Walter NG Biophys J 2006 May 15, 90:3672-85 [PubMed Central] [PubMed] [Related articles]
52.	Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. Starmer J, Stomp A, Vouk M, Bitzer D PLoS Comput Biol 2006 May, 2:e57 [PubMed Central] [PubMed] [Related articles]
53.	* Unable to retrieve article 16710451 * [PubMed Central] [PubMed] [Related articles]
54.	16S rRNA phylogenetic investigation of the candidate division "Korarchaeota". Auchtung TA, Takacs-Vesbach CD, Cavanaugh CM Appl Environ Microbiol 2006 Jul, 72:5077-82 [PubMed Central] [PubMed] [Related articles]
55.	Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments. Nesbø CL, Dlutek M, Zhaxybayeva O, Doolittle WF Appl Environ Microbiol 2006 Jul, 72:5061-8 [PubMed Central] [PubMed] [Related articles]
56.	Structural basis for mRNA and tRNA positioning on the ribosome. Berk V, Zhang W, Pai RD, Cate JH, Cate JH Proc Natl Acad Sci U S A 2006 Oct 24, 103:15830-4 [PubMed Central] [PubMed] [Related articles]
57.	Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast. Jackson SA, Koduvayur S, Woodson SA RNA 2006 Dec, 12:2149-59 [PubMed Central] [PubMed] [Related articles]
58.	The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Cole JR, Chai B, Farris RJ, Wang Q, Kulam-Syed-Mohideen AS, McGarrell DM, Bandela AM, Cardenas E, Garrity GM, Tiedje JM Nucleic Acids Res 2007 Jan, 35:D169-72 [PubMed Central] [PubMed] [Related articles]
59.	PATRIC: the VBI PathoSystems Resource Integration Center. Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, Hance M, Huntington KI, Jukneliene D, Koziski J, Mackasmiel L, Mane SP, Nguyen V, Purkayastha A, Shallom J, Yu G, Guo Y, Gabbard J, Hix D, Azad AF, Baker SC, Boyle SM, Khudyakov Y, Meng XJ, Rupprecht C, Vinje J, Crasta OR, Czar MJ, Dickerman A, Eckart JD, Kenyon R, Will R, Setubal JC, Sobral BW Nucleic Acids Res 2007 Jan, 35:D401-6 [PubMed Central] [PubMed] [Related articles]
60.	Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA. Freyhult EK, Bollback JP, Gardner PP Genome Res 2007 Jan, 17:117-25 [PubMed Central] [PubMed] [Related articles]
61.	Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies. Case RJ, Boucher Y, Dahllöf I, Holmström C, Doolittle WF, Kjelleberg S Appl Environ Microbiol 2007 Jan, 73:278-88 [PubMed Central] [PubMed] [Related articles]
62.	Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine. Guymon R, Pomerantz SC, Ison JN, Crain PF, McCloskey JA RNA 2007 Mar, 13:396-403 [PubMed Central] [PubMed] [Related articles]
63.	New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. Piekna-Przybylska D, Decatur WA, Fournier MJ RNA 2007 Mar, 13:305-12 [PubMed Central] [PubMed] [Related articles]
64.	Mitochondrial genome sequence evolution in Chlamydomonas. Popescu CE, Lee RW Genetics 2007 Feb, 175:819-26 [PubMed Central] [PubMed] [Related articles]
65.	Genome of the opportunistic pathogen Streptococcus sanguinis. Xu P, Alves JM, Kitten T, Brown A, Chen Z, Ozaki LS, Manque P, Ge X, Serrano MG, Puiu D, Hendricks S, Wang Y, Chaplin MD, Akan D, Paik S, Peterson DL, Macrina FL, Buck GA J Bacteriol 2007 Apr, 189:3166-75 [PubMed Central] [PubMed] [Related articles]
66.	Performance of the translational apparatus varies with the ecological strategies of bacteria. Dethlefsen L, Schmidt TM J Bacteriol 2007 Apr, 189:3237-45 [PubMed Central] [PubMed] [Related articles]
67.	Evolutionary rates vary among rRNA structural elements. Smit S, Widmann J, Knight R Nucleic Acids Res 2007, 35:3339-54 [PubMed Central] [PubMed] [Related articles]
68.	A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes. Yao Z, Barrick J, Weinberg Z, Neph S, Breaker R, Tompa M, Ruzzo WL PLoS Comput Biol 2007 Jul, 3:e126 [PubMed Central] [PubMed] [Related articles]
69.	* Unable to retrieve article 17616982 * [PubMed Central] [PubMed] [Related articles]
70.	A robust species tree for the alphaproteobacteria. Williams KP, Sobral BW, Dickerman AW J Bacteriol 2007 Jul, 189:4578-86 [PubMed Central] [PubMed] [Related articles]
71.	Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Wang Q, Garrity GM, Tiedje JM, Cole JR Appl Environ Microbiol 2007 Aug, 73:5261-7 [PubMed Central] [PubMed] [Related articles]
72.	Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome. Korostelev A, Trakhanov S, Asahara H, Laurberg M, Lancaster L, Noller HF Proc Natl Acad Sci U S A 2007 Oct 23, 104:16840-3 [PubMed Central] [PubMed] [Related articles]
73.	The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA. Toh SM, Xiong L, Bae T, Mankin AS RNA 2008 Jan, 14:98-106 [PubMed Central] [PubMed] [Related articles]
74.	Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit. Schroeder SJ, Blaha G, Moore PB Antimicrob Agents Chemother 2007 Dec, 51:4462-5 [PubMed Central] [PubMed] [Related articles]
75.	Visualization software for molecular assemblies. Goddard TD, Ferrin TE Curr Opin Struct Biol 2007 Oct, 17:587-95 [PubMed Central] [PubMed] [Related articles]
76.	Biclustering as a method for RNA local multiple sequence alignment. Wang S, Gutell RR, Miranker DP Bioinformatics 2007 Dec 15, 23:3289-96 [PubMed Central] [PubMed] [Related articles]
77.	The 3D rRNA modification maps database: with interactive tools for ribosome analysis. Piekna-Przybylska D, Decatur WA, Fournier MJ Nucleic Acids Res 2008 Jan, 36:D178-83 [PubMed Central] [PubMed] [Related articles]
78.	From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal. Smit S, Rother K, Heringa J, Knight R RNA 2008 Mar, 14:410-6 [PubMed Central] [PubMed] [Related articles]
79.	Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA. Saraiya AA, Lamichhane TN, Chow CS, SantaLucia J, Cunningham PR J Mol Biol 2008 Feb 22, 376:645-57 [PubMed Central] [PubMed] [Related articles]
80.	Temperature-dependent RNP conformational rearrangements: analysis of binary complexes of primary binding proteins with 16 S rRNA. Dutc LM, Jagannathan I, Grondek JF, Culver GM J Mol Biol 2007 May 4, 368:853-69 [PubMed Central] [PubMed] [Related articles]
81.	KnotSeeker: heuristic pseudoknot detection in long RNA sequences. Sperschneider J, Datta A RNA 2008 Apr, 14:630-40 [PubMed Central] [PubMed] [Related articles]
82.	The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates. Kondo J, Westhof E Nucleic Acids Res 2008 May, 36:2654-66 [PubMed Central] [PubMed] [Related articles]
83.	Apoptotic signals induce specific degradation of ribosomal RNA in yeast. Mroczek S, Kufel J Nucleic Acids Res 2008 May, 36:2874-88 [PubMed Central] [PubMed] [Related articles]
84.	R-Coffee: a method for multiple alignment of non-coding RNA. Wilm A, Higgins DG, Notredame C Nucleic Acids Res 2008 May, 36:e52 [PubMed Central] [PubMed] [Related articles]
85.	Evolutionary relationships of "Candidatus endobugula" bacterial symbionts and their Bugula bryozoan hosts. Lim-Fong GE, Regali LA, Haygood MG Appl Environ Microbiol 2008 Jun, 74:3605-9 [PubMed Central] [PubMed] [Related articles]
86.	Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs. Decatur WA, Schnare MN Mol Cell Biol 2008 May, 28:3089-100 [PubMed Central] [PubMed] [Related articles]
87.	Structural basis for hygromycin B inhibition of protein biosynthesis. Borovinskaya MA, Shoji S, Fredrick K, Cate JH RNA 2008 Aug, 14:1590-9 [PubMed Central] [PubMed] [Related articles]
88.	Molecular signatures of ribosomal evolution. Roberts E, Sethi A, Montoya J, Woese CR, Luthey-Schulten Z Proc Natl Acad Sci U S A 2008 Sep 16, 105:13953-8 [PubMed Central] [PubMed] [Related articles]
89.	Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops. Blose JM, Manni ML, Klapec KA, Stranger-Jones Y, Zyra AC, Sim V, Griffith CA, Long JD, Serra MJ Biochemistry 2007 Dec 25, 46:15123-35 [PubMed Central] [PubMed] [Related articles]
90.	Toward predicting self-splicing and protein-facilitated splicing of group I introns. Vicens Q, Paukstelis PJ, Westhof E, Lambowitz AM, Cech TR RNA 2008 Oct, 14:2013-29 [PubMed Central] [PubMed] [Related articles]
91.	Kinetic and thermodynamic studies of peptidyltransferase in ribosomes from the extreme thermophile Thermus thermophilus. Rodriguez-Correa D, Dahlberg AE RNA 2008 Nov, 14:2314-8 [PubMed Central] [PubMed] [Related articles]
92.	Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases. Nomura N, Nomura Y, Sussman D, Klein D, Stoddard BL Nucleic Acids Res 2008 Dec, 36:6988-98 [PubMed Central] [PubMed] [Related articles]
93.	Accurate SHAPE-directed RNA structure determination. Deigan KE, Li TW, Mathews DH, Weeks KM Proc Natl Acad Sci U S A 2009 Jan 6, 106:97-102 [PubMed Central] [PubMed] [Related articles]
94.	Structural analysis of kasugamycin inhibition of translation. Schuwirth BS, Day JM, Hau CW, Janssen GR, Dahlberg AE, Cate JH, Vila-Sanjurjo A Nat Struct Mol Biol 2006 Oct, 13:879-86 [PubMed Central] [PubMed] [Related articles]
95.	Linking sequence to function in soil bacteria: sequence-directed isolation of novel bacteria contributing to soilborne plant disease suppression. Benítez MS, Gardener BB Appl Environ Microbiol 2009 Feb, 75:915-24 [PubMed Central] [PubMed] [Related articles]
96.	Genetic and structural analysis of base substitutions in the central pseudoknot of Thermus thermophilus 16S ribosomal RNA. Gregory ST, Dahlberg AE RNA 2009 Feb, 15:215-23 [PubMed Central] [PubMed] [Related articles]
97.	Finding 3D motifs in ribosomal RNA structures. Apostolico A, Ciriello G, Guerra C, Heitsch CE, Hsiao C, Williams LD Nucleic Acids Res 2009 Mar, 37:e29 [PubMed Central] [PubMed] [Related articles]
98.	Genetic analysis of the invariant residue G791 in Escherichia coli 16S rRNA implicates RelA in ribosome function. Kim HM, Ryou SM, Song WS, Sim SH, Cha CJ, Han SH, Ha NC, Kim JH, Bae J, Cunningham PR, Lee K J Bacteriol 2009 Apr, 191:2042-50 [PubMed Central] [PubMed] [Related articles]
99.	RNA structure prediction from evolutionary patterns of nucleotide composition. Smit S, Knight R, Heringa J Nucleic Acids Res 2009 Apr, 37:1378-86 [PubMed Central] [PubMed] [Related articles]
100.	Local RNA structure alignment with incomplete sequence. Kolbe DL, Eddy SR Bioinformatics 2009 May 15, 25:1236-43 [PubMed Central] [PubMed] [Related articles]
101.	Transcriptional down-regulation and rRNA cleavage in Dictyostelium discoideum mitochondria during Legionella pneumophila infection. Zhang C, Kuspa A PLoS One 2009, 4:e5706 [PubMed Central] [PubMed] [Related articles]
102.	The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM Nucleic Acids Res 2009 Jan, 37:D141-5 [PubMed Central] [PubMed] [Related articles]
103.	MODOMICS: a database of RNA modification pathways. 2008 update. Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K Nucleic Acids Res 2009 Jan, 37:D118-21 [PubMed Central] [PubMed] [Related articles]
104.	A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase center. Hsiao C, Williams LD Nucleic Acids Res 2009 Jun, 37:3134-42 [PubMed Central] [PubMed] [Related articles]
105.	Optimization of a ribosomal structural domain by natural selection. Maeder C, Conn GL, Draper DE Biochemistry 2006 May 30, 45:6635-43 [PubMed Central] [PubMed] [Related articles]
106.	Its evolution in Platanus (Platanaceae): homoeologues, pseudogenes and ancient hybridization. Grimm GW, Denk T Ann Bot 2008 Feb, 101:403-19 [PubMed Central] [PubMed] [Related articles]
107.	Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA. Wilkinson KA, Vasa SM, Deigan KE, Mortimer SA, Giddings MC, Weeks KM RNA 2009 Jul, 15:1314-21 [PubMed Central] [PubMed] [Related articles]
108.	Compensatory evolution in RNA secondary structures increases substitution rate variation among sites. Knies JL, Dang KK, Vision TJ, Hoffman NG, Swanstrom R, Burch CL Mol Biol Evol 2008 Aug, 25:1778-87 [PubMed Central] [PubMed] [Related articles]
109.	Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs. Shcherbakova I, Mitra S, Laederach A, Brenowitz M Curr Opin Chem Biol 2008 Dec, 12:655-66 [PubMed Central] [PubMed] [Related articles]
110.	Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. Wang Y, Qian PY PLoS One 2009, 4:e7401 [PubMed Central] [PubMed] [Related articles]
111.	Ion-induced folding of a kink turn that departs from the conventional sequence. Schroeder KT, Lilley DM Nucleic Acids Res 2009 Nov, 37:7281-9 [PubMed Central] [PubMed] [Related articles]
112.	Human mitochondrial RNA turnover caught in flagranti: involvement of hSuv3p helicase in RNA surveillance. Szczesny RJ, Borowski LS, Brzezniak LK, Dmochowska A, Gewartowski K, Bartnik E, Stepien PP Nucleic Acids Res 2010 Jan 1, 38:279-298 [PubMed Central] [PubMed] [Related articles]

This article is also cited by 23 articles in BioMed Central

You can also check ISI Web of Science for additional citations (subscription required)

printer friendly

to [Help]

Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us