Log on / register
Feedback
|
Support
|
My details
home
|
journals A-Z
|
subject areas
|
advanced search
|
authors
|
reviewers
|
libraries
|
about
|
my BioMed Central
Genome trees constructed using five different approaches suggest new major bacterial clades.
Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV
BMC Evol Biol
2001 Oct 20,
1
:8
[
Full text
]
[
PubMed
]
[
Related articles
]
[
F1000 Biology
]
[
Cited on BioMed Central
]
printer friendly
20 per page
50 per page
200 per page
500 per page
selected items
abstract
no abstract
any time period
7 Days
14 Days
30 Days
60 Days
90 Days
180 Days
1 Year
all 30 results
this page
selected items
to
Endnote (no abstracts)
Endnote + abstracts
Ref. Manager (no abstracts)
Ref. Manager + abstracts
RefWorks (no abstracts)
RefWorks + abstracts
BibTeX (no abstracts)
BibTeX + abstracts
ProCite (no abstracts)
ProCite + abstracts
[
Help
]
PubMed Central articles that cite the above article:
1.
The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.
Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, Tatusov RL, Wolf YI, Stetter KO, Malykh AG, Koonin EV, Kozyavkin SA
Proc Natl Acad Sci U S A
2002 Apr 2,
99
:4644-9
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
2.
Genome-wide molecular clock and horizontal gene transfer in bacterial evolution.
Novichkov PS, Omelchenko MV, Gelfand MS, Mironov AA, Wolf YI, Koonin EV
J Bacteriol
2004 Oct,
186
:6575-85
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
3.
Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS
Nucleic Acids Res
2003 Dec 1,
31
:6748-57
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
4.
Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis.
Wolf YI, Rogozin IB, Koonin EV
Genome Res
2004 Jan,
14
:29-36
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
5.
Towards a genome-based taxonomy for prokaryotes.
Konstantinidis KT, Tiedje JM
J Bacteriol
2005 Sep,
187
:6258-64
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
6.
Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance.
Omelchenko MV, Wolf YI, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Daly MJ, Koonin EV, Makarova KS
BMC Evol Biol
2005,
5
:57
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
7.
Genome trees from conservation profiles.
Tekaia F, Yeramian E
PLoS Comput Biol
2005 Dec,
1
:e75
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
8.
*** Unable to retrieve article 16362074 ***
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
9.
Comparative genomics of the lactic acid bacteria.
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Díaz-Muñiz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D
Proc Natl Acad Sci U S A
2006 Oct 17,
103
:15611-6
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
10.
Data mining for proteins characteristic of clades.
Bern M, Goldberg D, Lyashenko E
Nucleic Acids Res
2006,
34
:4342-53
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
11.
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores.
Clarke GD, Beiko RG, Ragan MA, Charlebois RL
J Bacteriol
2002 Apr,
184
:2072-80
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
12.
Predicted structure and phyletic distribution of the RNA-binding protein Hfq.
Sun X, Zhulin I, Wartell RM
Nucleic Acids Res
2002 Sep 1,
30
:3662-71
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
13.
Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily.
Mazumder R, Iyer LM, Vasudevan S, Aravind L
Nucleic Acids Res
2002 Dec 1,
30
:5229-43
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
14.
CVTree: a phylogenetic tree reconstruction tool based on whole genomes.
Qi J, Luo H, Hao B
Nucleic Acids Res
2004 Jul 1,
32
:W45-7
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
15.
Isoleucine biosynthesis in Leptospira interrogans serotype lai strain 56601 proceeds via a threonine-independent pathway.
Xu H, Zhang Y, Guo X, Ren S, Staempfli AA, Chiao J, Jiang W, Zhao G
J Bacteriol
2004 Aug,
186
:5400-9
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
16.
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging.
Iyer LM, Makarova KS, Koonin EV, Aravind L
Nucleic Acids Res
2004,
32
:5260-79
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
17.
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.
Hou S, Saw JH, Lee KS, Freitas TA, Belisle C, Kawarabayasi Y, Donachie SP, Pikina A, Galperin MY, Koonin EV, Makarova KS, Omelchenko MV, Sorokin A, Wolf YI, Li QX, Keum YS, Campbell S, Denery J, Aizawa S, Shibata S, Malahoff A, Alam M
Proc Natl Acad Sci U S A
2004 Dec 28,
101
:18036-41
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
18.
Phylogeny determined by protein domain content.
Yang S, Doolittle RF, Bourne PE
Proc Natl Acad Sci U S A
2005 Jan 11,
102
:373-8
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
19.
Weighted genome trees: refinements and applications.
Gophna U, Doolittle WF, Charlebois RL
J Bacteriol
2005 Feb,
187
:1305-16
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
20.
Prokaryotic phylogenies inferred from protein structural domains.
Deeds EJ, Hennessey H, Shakhnovich EI
Genome Res
2005 Mar,
15
:393-402
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
21.
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members.
Iyer LM, Koonin EV, Leipe DD, Aravind L
Nucleic Acids Res
2005,
33
:3875-96
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
22.
Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element.
Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS
RNA
2003 Sep,
9
:1084-97
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
23.
Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study.
Kechris KJ, Lin JC, Bickel PJ, Glazer AN
Proc Natl Acad Sci U S A
2006 Jun 20,
103
:9584-9
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
24.
New metrics for comparative genomics.
Galperin MY, Kolker E
Curr Opin Biotechnol
2006 Oct,
17
:440-7
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
25.
Evolutionary genomics of lactic acid bacteria.
Makarova KS, Koonin EV
J Bacteriol
2007 Feb,
189
:1199-208
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
26.
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks.
Makarova KS, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Lapidus A, Copeland A, Kim E, Land M, Mavrommatis K, Pitluck S, Richardson PM, Detter C, Brettin T, Saunders E, Lai B, Ravel B, Kemner KM, Wolf YI, Sorokin A, Gerasimova AV, Gelfand MS, Fredrickson JK, Koonin EV, Daly MJ
PLoS One
2007,
2
:e955
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
27.
Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs.
Horiike T, Miyata D, Hamada K, Saruhashi S, Shinozawa T, Kumar S, Chakraborty R, Komiyama T, Tateno Y
Gene
2009 Jan 15,
429
:59-64
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
28.
Modelling prokaryote gene content.
Spencer M, Susko E, Roger AJ
Evol Bioinform Online
2006,
2
:157-78
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
29.
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.
Novichkov PS, Ratnere I, Wolf YI, Koonin EV, Dubchak I
Nucleic Acids Res
2009 Jan,
37
:D448-54
[
PubMed Central
]
[
PubMed
]
[
Related articles
]
This article is also cited by
31 articles
in BioMed Central
printer friendly
20 per page
50 per page
200 per page
500 per page
selected items
abstract
no abstract
any time period
7 Days
14 Days
30 Days
60 Days
90 Days
180 Days
1 Year
all 30 results
this page
selected items
to
Endnote (no abstracts)
Endnote + abstracts
Ref. Manager (no abstracts)
Ref. Manager + abstracts
RefWorks (no abstracts)
RefWorks + abstracts
BibTeX (no abstracts)
BibTeX + abstracts
ProCite (no abstracts)
ProCite + abstracts
[
Help
]
Terms and Conditions
Privacy statement
Information for advertisers
Jobs at BMC
Contact us
© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of
Springer Science+Business Media
.