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A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.
Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP
Genome Biol 2008, 9 Suppl 1:S2
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1.


Research    
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR
Genome Biology 2009, 10:R97 (16 September 2009)
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An integrated approach for the systematic identification and characterization of heart-enriched genes with unknown functions
Uchida S, Schneider A, Wiesnet M, Jungblut B, Zarjitskaya P, Jenniches K, Kreymborg K, Seeger W, Braun T
BMC Genomics 2009, 10:100 (6 March 2009)
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Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy
Kim WK, Krumpelman C, Marcotte EM
Genome Biology 2008, 9(Suppl 1):S5 (27 June 2008)
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Introduction    
A race through the maze of genomic evidence
Hughes TR, Roth FP
Genome Biology 2008, 9(Suppl 1):S1 (27 June 2008)
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Method    
Consistent probabilistic outputs for protein function prediction
Obozinski G, Lanckriet G, Grant C, Jordan MI, Noble WS
Genome Biology 2008, 9(Suppl 1):S6 (27 June 2008)
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Research    
Predicting gene function in a hierarchical context with an ensemble of classifiers
Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG
Genome Biology 2008, 9(Suppl 1):S3 (27 June 2008)
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Method    
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q
Genome Biology 2008, 9(Suppl 1):S4 (27 June 2008)
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An en masse phenotype and function prediction system for Mus musculus
Taan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP
Genome Biology 2008, 9(Suppl 1):S8 (27 June 2008)
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