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Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y
BMC Genomics
2006,
7
:325
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BioMed Central articles that cite the above article:
1.
Methodology article
Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation
Ha KCH, Coulombe-Huntington J, Majewski J
BMC Genomics
2009,
10
:519
(12 November 2009)
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2.
Method
Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies
Laajala E, Aittokallio T, Lahesmaa R, Elo LL
Genome Biology
2009,
10
:R77
(16 July 2009)
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3.
Research article
Unsupervised assessment of microarray data quality using a Gaussian mixture model
Howard BE, Sick B, Heber S
BMC Bioinformatics
2009,
10
:191
(22 June 2009)
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4.
Methodology article
Differential splicing using whole-transcript microarrays
Robinson MD, Speed TP
BMC Bioinformatics
2009,
10
:156
(22 May 2009)
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5.
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Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array
Hang X, Li P, Li Z, Qu W, Yu Y, Li H, Shen Z, Zheng H, Gao Y, Wu Y, Deng M, Sun Z, Zhang C
BMC Genomics
2009,
10
:126
(25 March 2009)
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6.
Research
REMAS: a new regression model to identify alternative splicing events from exon array data
Zheng H, Hang X, Zhu J, Qian M, Qu W, Zhang C, Deng M
BMC Bioinformatics
2009,
10
(Suppl 1):S18
(30 January 2009)
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7.
Research
Studying alternative splicing regulatory networks through partial correlation analysis
Chen L, Zheng S
Genome Biology
2009,
10
:R3
(9 January 2009)
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8.
Research article
Dissecting an alternative splicing analysis workflow for GeneChip
®
Exon 1.0 ST Affymetrix arrays
Della Beffa C, Cordero F, Calogero RA
BMC Genomics
2008,
9
:571
(28 November 2008)
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9.
Software
ExonMiner: Web service for analysis of GeneChip Exon array data
Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S
BMC Bioinformatics
2008,
9
:494
(26 November 2008)
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10.
Methodology article
Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays
Kechris K, Yang YH, Yeh RF
BMC Genomics
2008,
9
:551
(20 November 2008)
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11.
Methodology article
Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays
Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J
BMC Genomics
2008,
9
:529
(7 November 2008)
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12.
Software
easyExon
A Java-based GUI tool for processing and visualization of Affymetrix exon array data
Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW
BMC Bioinformatics
2008,
9
:432
(14 October 2008)
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13.
Research article
Splice-mediated Variants of Proteins (SpliVaP)
data and characterization of changes in signatures among protein isoforms due to alternative splicing
Floris M, Orsini M, Thanaraj TA
BMC Genomics
2008,
9
:453
(2 October 2008)
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14.
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The pro-apoptotic K-Ras 4A proto-oncoprotein does not affect tumorigenesis in the
Apc
Min/+
mouse small intestine
Patek CE, Arends MJ, Rose L, Luo F, Walker M, Devenney PS, Berry RL, Lawrence NJ, Ridgway RA, Sansom OJ, Hooper ML
BMC Gastroenterology
2008,
8
:24
(13 June 2008)
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15.
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Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences
Su WL, Modrek B, GuhaThakurta D, Edwards S, Shah JK, Kulkarni AV, Russell A, Schadt EE, Johnson JM, Castle JC
BMC Genomics
2008,
9
:273
(4 June 2008)
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16.
Research article
Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays
Cheung HC, Baggerly KA, Tsavachidis S, Bachinski LL, Neubauer VL, Nixon TJ, Aldape KD, Cote GJ, Krahe R
BMC Genomics
2008,
9
:216
(12 May 2008)
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Research article
Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes
Shen F, Huang J, Fitch KR, Truong VB, Kirby A, Chen W, Zhang J, Liu G, McCarroll SA, Jones KW, Shapero MH
BMC Genetics
2008,
9
:27
(28 March 2008)
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A comparison of Affymetrix gene expression arrays
Robinson MD, Speed TP
BMC Bioinformatics
2007,
8
:449
(15 November 2007)
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19.
Research
Exon expression profiling reveals stimulus-mediated exon use in neural cells
McKee AE, Neretti N, Carvalho LE, Meyer CA, Fox EA, Brodsky AS, Silver PA
Genome Biology
2007,
8
:R159
(2 August 2007)
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This article is also cited by a further
25 articles
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