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A reanalysis of a published Affymetrix GeneChip control dataset.
Dabney AR, Storey JD
Genome Biol
2006,
7
:401
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BioMed Central articles that cite the above article:
1.
Research article
A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
Pearson RD
BMC Bioinformatics
2008,
9
:164
(26 March 2008)
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The utility of MAS5 expression summary and detection call algorithms
Pepper SD, Saunders EK, Edwards LE, Wilson CL, Miller CJ
BMC Bioinformatics
2007,
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:273
(30 July 2007)
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Estimation and correction of non-specific binding in a large-scale spike-in experiment
Schuster EF, Blanc E, Partridge L, Thornton JM
Genome Biology
2007,
8
:R126
(26 June 2007)
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Pre-processing Agilent microarray data
Zahurak M, Parmigiani G, Yu W, Scharpf RB, Berman D, Schaeffer E, Shabbeer S, Cope L
BMC Bioinformatics
2007,
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:142
(1 May 2007)
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Towards the uniform distribution of null
P
values on Affymetrix microarrays
Fodor AA, Tickle TL, Richardson C
Genome Biology
2007,
8
:R69
(1 May 2007)
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Putative null distributions corresponding to tests of differential expression in the Golden Spike dataset are intensity dependent
Gaile DP, Miecznikowski JC
BMC Genomics
2007,
8
:105
(19 April 2007)
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7.
Methodology article
Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays
Hess A, Iyer H
BMC Genomics
2007,
8
:96
(9 April 2007)
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8.
Method
Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships
Dabney AR, Storey JD
Genome Biology
2007,
8
:R44
(28 March 2007)
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9.
Research article
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments
Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M
BMC Bioinformatics
2006,
7
:538
(19 December 2006)
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10.
Methodology
The Shivplot: a graphical display for trend elucidation and exploratory analysis of microarray data
Woody OZ, Nadon R
Source Code for Biology and Medicine
2006,
1
:6
(8 November 2006)
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11.
Correspondence
Feature-level exploration of a published Affymetrix GeneChip control dataset
Irizarry RA, Cope LM, Wu Z
Genome Biology
2006,
7
:404
(1 September 2006)
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This article is also cited by a further
1 article
in PubMed Central
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