Log on / register
Feedback | Support | My details
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).
Zeeberg BR, Qin H, Narasimhan S, Sunshine M, Cao H, Kane DW, Reimers M, Stephens RM, Bryant D, Burt SK, Elnekave E, Hari DM, Wynn TA, Cunningham-Rundles C, Stewart DM, Nelson D, Weinstein JN
BMC Bioinformatics 2005, 6:168
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

BioMed Central articles that cite the above article:

1.


Research article    
Glucocorticoids with different chemical structures but similar glucocorticoid receptor potency regulate subsets of common and unique genes in human trabecular meshwork cells
Nehmé A, Lobenhofer EK, Stamer WD, Edelman JL
BMC Medical Genomics 2009, 2:58 (10 September 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

2.


Research article    
Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell
Marco A, Marín I
BMC Systems Biology 2009, 3:69 (15 July 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

3.


Software    
Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis
Yi M, Mudunuri U, Che A, Stephens RM
BMC Bioinformatics 2009, 10:200 (29 June 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

4.


Research    
MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells
Ren J, Jin P, Wang E, Marincola FM, Stroncek DF
Journal of Translational Medicine 2009, 7:20 (23 March 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

5.


Research article    
An Open Access Database of Genome-wide Association Results
Johnson AD, O'Donnell CJ
BMC Medical Genetics 2009, 10:6 (22 January 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

6.


Short Report    
Advanced spot quality analysis in two-colour microarray experiments
Yatskou M, Novikov E, Vetter G, Muller A, Barillot E, Vallar L, Friederich E
BMC Research Notes 2008, 1:80 (17 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

7.


Method    
Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype
Lobenhofer EK, Auman JT, Blackshear PE, Boorman GA, Bushel PR, Cunningham ML, Fostel JM, Gerrish K, Heinloth AN, Irwin RD, Malarkey DE, Merrick BA, Sieber SO, Tucker CJ, Ward SM, Wilson RE, Hurban P, Tennant RW, Paules RS
Genome Biology 2008, 9:R100 (20 June 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

8.


Research article    
Genes related to apoptosis predict necrosis of the liver as a phenotype observed in rats exposed to a compendium of hepatotoxicants
Huang L, Heinloth AN, Zeng ZB, Paules RS, Bushel PR
BMC Genomics 2008, 9:288 (16 June 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

9.


Methodology article    
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
Kestler HA, Müller A, Kraus JM, Buchholz M, Gress TM, Liu H, Kane DW, Zeeberg BR, Weinstein JN
BMC Bioinformatics 2008, 9:67 (29 January 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

10.


Methodology article    
A general strategy to determine the congruence between a hierarchical and a non-hierarchical classification
Marco A, Marín I
BMC Bioinformatics 2007, 8:442 (15 November 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

11.


Method    
The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data
Eichler GS, Reimers M, Kane D, Weinstein JN
Genome Biology 2007, 8:R187 (10 September 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

12.


Software    
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA
Genome Biology 2007, 8:R183 (4 September 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

13.


Research article    
Gene expression changes associated with Barrett's esophagus and Barrett's-associated adenocarcinoma cell lines after acid or bile salt exposure
Hao Y, Sood S, Triadafilopoulos G, Kim JH, Wang Z, Sahbaie P, Omary MB, Lowe AW
BMC Gastroenterology 2007, 7:24 (27 June 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

14.


Database    
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis
Kahn AB, Ryan MC, Liu H, Zeeberg BR, Jamison DC, Weinstein JN
BMC Bioinformatics 2007, 8:75 (5 March 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

15.


Software    
FUNC: a package for detecting significant associations between gene sets and ontological annotations
Prüfer K, Muetzel B, Do HH, Weiss G, Khaitovich P, Rahm E, Pääbo S, Lachmann M, Enard W
BMC Bioinformatics 2007, 8:41 (6 February 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

16.


Software    
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
Usadel B, Nagel A, Steinhauser D, Gibon Y, Bläsing OE, Redestig H, Sreenivasulu N, Krall L, Hannah MA, Poree F, Fernie AR, Stitt M
BMC Bioinformatics 2006, 7:535 (18 December 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

17.


Research article    
Mining expressed sequence tags identifies cancer markers of clinical interest
Campagne F, Skrabanek L
BMC Bioinformatics 2006, 7:481 (1 November 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

18.


Proceedings    
GOFFA: Gene Ontology For Functional Analysis A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data
Sun H, Fang H, Chen T, Perkins R, Tong W
BMC Bioinformatics 2006, 7(Suppl 2):S23 (26 September 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

19.


Methodology article    
Cluster analysis of protein array results via similarity of Gene Ontology annotation
Wolting C, McGlade CJ, Tritchler D
BMC Bioinformatics 2006, 7:338 (12 July 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

20.


Software    
STEM: a tool for the analysis of short time series gene expression data
Ernst J, Bar-Joseph Z
BMC Bioinformatics 2006, 7:191 (5 April 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

21.


Research    
The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles
Sandberg R, Ernberg I
Genome Biology 2005, 6:R65 (27 July 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]


This article is also cited by a further 23 articles in PubMed Central


You can also check ISI Web of Science for additional citations (subscription required)
  
printer friendly 
to  [Help]

© 1999-2010 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.