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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R
Genome Biol
2005,
6
:R9
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BioMed Central articles that cite the above article:
1.
Research article
MRM screening/biomarker discovery with linear ion trap MS: a library of human cancer-specific peptides
Yang X, Lazar IM
BMC Cancer
2009,
9
:96
(27 March 2009)
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2.
Database
The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation
Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE, The FlyBase Consortium , Aebersold R, Hafen E
BMC Bioinformatics
2009,
10
:59
(11 February 2009)
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3.
Research article
Exploiting proteomic data for genome annotation and gene model validation in
Aspergillus niger
Wright JC, Sugden D, Francis-McIntyre S, Riba-Garcia I, Gaskell SJ, Grigoriev IV, Baker SE, Beynon RJ, Hubbard SJ
BMC Genomics
2009,
10
:61
(4 February 2009)
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4.
Methodology article
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD
BMC Bioinformatics
2008,
9
:542
(16 December 2008)
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5.
Software
LC-MSsim
a simulation software for liquid chromatography mass spectrometry data
Schulz-Trieglaff O, Pfeifer N, Gröpl C, Kohlbacher O, Reinert K
BMC Bioinformatics
2008,
9
:423
(8 October 2008)
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6.
Method
A mouse plasma peptide atlas as a resource for disease proteomics
Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, DePinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM
Genome Biology
2008,
9
:R93
(3 June 2008)
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7.
Minireview
High-accuracy proteome maps of human body fluids
Schmidt A, Aebersold R
Genome Biology
2006,
7
:242
(28 November 2006)
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8.
Method
Analysis of the
Saccharomyces cerevisiae
proteome with PeptideAtlas
King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R
Genome Biology
2006,
7
:R106
(13 November 2006)
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Database
AgBase: a functional genomics resource for agriculture
McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC
BMC Genomics
2006,
7
:229
(8 September 2006)
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10.
Software
UniPep - a database for human
N
-linked glycosites: a resource for biomarker discovery
Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R
Genome Biology
2006,
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:R73
(10 August 2006)
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Research
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
de Godoy LMF, Olsen JV, de Souza GA, Li G, Mortensen P, Mann M
Genome Biology
2006,
7
:R50
(19 June 2006)
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Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics
Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ
Genome Biology
2006,
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:R35
(28 April 2006)
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2DDB
a bioinformatics solution for analysis of quantitative proteomics data
Malmström L, Marko-Varga G, Westergren-Thorsson G, Laurell T, Malmström J
BMC Bioinformatics
2006,
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:158
(20 March 2006)
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14.
Research article
Genome annotation of
Anopheles gambiae
using mass spectrometry-derived data
Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A
BMC Genomics
2005,
6
:128
(19 September 2005)
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This article is also cited by a further
21 articles
in PubMed Central
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