Log on / register
Feedback | Support | My details
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R
Genome Biol 2005, 6:R9
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

BioMed Central articles that cite the above article:

1.


Research article    
MRM screening/biomarker discovery with linear ion trap MS: a library of human cancer-specific peptides
Yang X, Lazar IM
BMC Cancer 2009, 9:96 (27 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

2.


Database    
The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation
Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE, The FlyBase Consortium , Aebersold R, Hafen E
BMC Bioinformatics 2009, 10:59 (11 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

3.


Research article    
Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
Wright JC, Sugden D, Francis-McIntyre S, Riba-Garcia I, Gaskell SJ, Grigoriev IV, Baker SE, Beynon RJ, Hubbard SJ
BMC Genomics 2009, 10:61 (4 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

4.


Methodology article    
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD
BMC Bioinformatics 2008, 9:542 (16 December 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

5.


Software    
LC-MSsim a simulation software for liquid chromatography mass spectrometry data
Schulz-Trieglaff O, Pfeifer N, Gröpl C, Kohlbacher O, Reinert K
BMC Bioinformatics 2008, 9:423 (8 October 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] [1 comment]

6.


Method    
A mouse plasma peptide atlas as a resource for disease proteomics
Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, DePinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM
Genome Biology 2008, 9:R93 (3 June 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

7.


Minireview    
High-accuracy proteome maps of human body fluids
Schmidt A, Aebersold R
Genome Biology 2006, 7:242 (28 November 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

8.


Method    
Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas
King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R
Genome Biology 2006, 7:R106 (13 November 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

9.


Database    
AgBase: a functional genomics resource for agriculture
McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC
BMC Genomics 2006, 7:229 (8 September 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

10.


Software    
UniPep - a database for human N-linked glycosites: a resource for biomarker discovery
Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R
Genome Biology 2006, 7:R73 (10 August 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

11.


Research    
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
de Godoy LMF, Olsen JV, de Souza GA, Li G, Mortensen P, Mann M
Genome Biology 2006, 7:R50 (19 June 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

12.


Research    
Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics
Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ
Genome Biology 2006, 7:R35 (28 April 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

13.


Software    
2DDB a bioinformatics solution for analysis of quantitative proteomics data
Malmström L, Marko-Varga G, Westergren-Thorsson G, Laurell T, Malmström J
BMC Bioinformatics 2006, 7:158 (20 March 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

14.


Research article    
Genome annotation of Anopheles gambiae using mass spectrometry-derived data
Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A
BMC Genomics 2005, 6:128 (19 September 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]


This article is also cited by a further 21 articles in PubMed Central


You can also check ISI Web of Science for additional citations (subscription required)
printer friendly 
to  [Help]

© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.