Log on / register
Feedback | Support | My details
PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences.
Sinha S, Blanchette M, Tompa M
BMC Bioinformatics 2004 Oct 28, 5:170
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

BioMed Central articles that cite the above article:

1.


Research article    
Discovery of cis-elements between sorghum and rice using co-expression and evolutionary conservation
Wang X, Haberer G, Mayer KFX
BMC Genomics 2009, 10:284 (26 June 2009)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
2.

Review   
Integrating sequence, evolution and functional genomics in regulatory genomics
Vingron M, Brazma A, Coulson R, van Helden J, Manke T, Palin K, Sand O, Ukkonen E
Genome Biology 2009, 10:202 (30 January 2009)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
3.


Research article    
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
Janky R, van Helden J
BMC Bioinformatics 2008, 9:37 (23 January 2008)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
4.


Research article    
Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila
Gu J, Fu H, Zhang X, Li Y
BMC Bioinformatics 2007, 8:432 (8 November 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
5.


Proceedings    
A survey of DNA motif finding algorithms
Das MK, Dai HK
BMC Bioinformatics 2007, 8(Suppl 7):S21 (1 November 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
6.


Review    
Finding regulatory elements and regulatory motifs: a general probabilistic framework
van Nimwegen E
BMC Bioinformatics 2007, 8(Suppl 6):S4 (27 September 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
7.


Research article    
Inference of transcriptional regulation using gene expression data from the bovine and human genomes
Zadissa A, McEwan JC, Brown CM
BMC Genomics 2007, 8:265 (3 August 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
8.


Research    
Automatic image analysis for gene expression patterns of fly embryos
Peng H, Long F, Zhou J, Leung G, Eisen MB, Myers EW
BMC Cell Biology 2007, 8(Suppl 1):S7 (10 July 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
9.


Research article    
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Pavesi G, Zambelli F, Pesole G
BMC Bioinformatics 2007, 8:46 (7 February 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
10.


Research    
Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs
Mao L, Zheng WJ
BMC Bioinformatics 2006, 7(Suppl 4):S21 (12 December 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
11.


Research    
Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics
Vandepoele K, Casneuf T, Van de Peer Y
Genome Biology 2006, 7:R103 (7 November 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
12.


Research article    
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Shida K
BMC Bioinformatics 2006, 7:486 (4 November 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
13.


Research article    
EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences
Hu J, Yang YD, Kihara D
BMC Bioinformatics 2006, 7:342 (13 July 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
14.


Methodology article    
BLISS: biding site level identification of shared signal-modules in DNA regulatory sequences
Meng H, Banerjee A, Zhou L
BMC Bioinformatics 2006, 7:287 (7 June 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
15.


Research article    
Phylogeny based discovery of regulatory elements
Gertz J, Fay JC, Cohen BA
BMC Bioinformatics 2006, 7:266 (22 May 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
16.


Research article    
Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data
Huber BR, Bulyk ML
BMC Bioinformatics 2006, 7:229 (27 April 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
17.


Review    
A survey of motif discovery methods in an integrated framework
Sandve GK, Drabløs F
Biology Direct 2006, 1:11 (6 April 2006)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
18.


Software    
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Siddharthan R
BMC Bioinformatics 2006, 7:143 (16 March 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
19.




Research article    
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E
BMC Bioinformatics 2006, 7:113 (7 March 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]

This article is also cited by a further 29 articles in PubMed Central


You can also check ISI Web of Science for additional citations (subscription required)
printer friendly 
to  [Help]
Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us
© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.