Log on / register
Feedback | Support | My details
Identifying combinatorial regulation of transcription factors and binding motifs.
Kato M, Hata N, Banerjee N, Futcher B, Zhang MQ
Genome Biol 2004, 5:R56
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

BioMed Central articles that cite the above article:

1.
36%36%


Database    
PlantPAN: Plant Promoter Analysis Navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups
Chang WC, Lee TY, Huang HD, Huang HY, Pan RL
BMC Genomics 2008, 9:561 (26 November 2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

2.
36%36%


Research article    
Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation
Orzechowski Westholm J, Xu F, Ronne H, Komorowski J
BMC Bioinformatics 2008, 9:484 (17 November 2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

3.
36%36%


Methodology article    
GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach
Shen L, Liu J, Wang W
BMC Bioinformatics 2008, 9:395 (24 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

4.
36%36%


Research article    
Identifying gene regulatory modules of heat shock response in yeast
Wu WS, Li WH
BMC Genomics 2008, 9:439 (23 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

5.
36%36%


Method    
Prediction of synergistic transcription factors by function conservation
Hu Z, Hu B, Collins JF
Genome Biology 2007, 8:R257 (5 December 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

6.
36%36%


Research article    
Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors
Andersson CR, Hvidsten TR, Isaksson A, Gustafsson MG, Komorowski J
BMC Systems Biology 2007, 1:45 (16 October 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

7.
36%36%


Research    
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules
Boeva V, Clément J, Régnier M, Roytberg MA, Makeev VJ
Algorithms for Molecular Biology 2007, 2:13 (10 October 2007)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

8.
36%36%


Research    
Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation
He F, Buer J, Zeng AP, Balling R
Genome Biology 2007, 8:R181 (4 September 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

9.
36%36%


Research article    
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
Wu WS, Li WH, Chen BS
BMC Bioinformatics 2007, 8:188 (8 June 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

10.
36%36%


Software    
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Kato M, Tsunoda T
BMC Bioinformatics 2007, 8:100 (22 March 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

11.
36%36%


Methodology article    
Bioinformatics analysis of the early inflammatory response in a rat thermal injury model
Yang E, Maguire T, Yarmush ML, Berthiaume F, Androulakis IP
BMC Bioinformatics 2007, 8:10 (10 January 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

12.
36%36%


Software    
Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT
Cheung TH, Kwan YL, Hamady M, Liu X
Genome Biology 2006, 7:R97 (25 October 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

13.
36%36%


Research article    
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle
Wu WS, Li WH, Chen BS
BMC Bioinformatics 2006, 7:421 (29 September 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

14.
36%36%


Method    
A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements
Wang G, Zhang W
Genome Biology 2006, 7:R49 (20 June 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

15.
36%36%


Method    
Inferring transcriptional modules from ChIP-chip, motif and microarray data
Lemmens K, Dhollander T, De Bie T, Monsieurs P, Engelen K, Smets B, Winderickx J, De Moor B, Marchal K
Genome Biology 2006, 7:R37 (5 May 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

16.
36%36%


Review    
A survey of motif discovery methods in an integrated framework
Sandve GK, Drabløs F
Biology Direct 2006, 1:11 (6 April 2006)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

17.
36%36%


Methodology article    
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
Lin LH, Lee HC, Li WH, Chen BS
BMC Bioinformatics 2005, 6:258 (18 October 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

18.
36%36%


Research    
Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach
Boulesteix AL, Strimmer K
Theoretical Biology and Medical Modelling 2005, 2:23 (24 June 2005)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]


This article is also cited by a further 13 articles in PubMed Central


You can also check ISI Web of Science for additional citations (subscription required)
printer friendly 
to  [Help]

© 1999-2008 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.