Log on / register
Feedback | Support | My details
Computational prediction of transcription-factor binding site locations.
Bulyk ML
Genome Biol 2003, 5:201
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

BioMed Central articles that cite the above article:

1.


Research article    
Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks
Andrabi M, Mizuguchi K, Sarai A, Ahmad S
BMC Structural Biology 2009, 9:30 (13 May 2009)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
2.

Review   
Integrating sequence, evolution and functional genomics in regulatory genomics
Vingron M, Brazma A, Coulson R, van Helden J, Manke T, Palin K, Sand O, Ukkonen E
Genome Biology 2009, 10:202 (30 January 2009)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
3.


Software    
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H
BMC Bioinformatics 2008, 9:455 (27 October 2008)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
4.


Research article    
A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1
Francke C, Kerkhoven R, Wels M, Siezen RJ
BMC Genomics 2008, 9:145 (27 March 2008)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
5.




Research    
Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses
Li L, Zhu Q, He X, Sinha S, Halfon MS
Genome Biology 2007, 8:R101 (5 June 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
6.


Research article    
A comparative genomics approach to identifying the plasticity transcriptome
Pfenning AR, Schwartz R, Barth AL
BMC Neuroscience 2007, 8:20 (13 March 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
7.


Research article    
In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells
Naamane N, van Helden J, Eizirik DL
BMC Bioinformatics 2007, 8:55 (15 February 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
8.


Research article    
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Pavesi G, Zambelli F, Pesole G
BMC Bioinformatics 2007, 8:46 (7 February 2007)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
9.


Research article    
Cis-regulatory variations: A study of SNPs around genes showing cis-linkage in segregating mouse populations
GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE
BMC Genomics 2006, 7:235 (15 September 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
10.


Research article    
Prediction of a key role of motifs binding E2F and NR2F in down-regulation of numerous genes during the development of the mouse hippocampus
Dabrowski M, Aerts S, Kaminska B
BMC Bioinformatics 2006, 7:367 (2 August 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles]
11.


Methodology article    
Bounded search for de novo identification of degenerate cis-regulatory elements
Carlson JM, Chakravarty A, Khetani RS, Gross RH
BMC Bioinformatics 2006, 7:254 (15 May 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
12.


Research article    
Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data
Huber BR, Bulyk ML
BMC Bioinformatics 2006, 7:229 (27 April 2006)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
13.


Review    
A survey of motif discovery methods in an integrated framework
Sandve GK, Drabløs F
Biology Direct 2006, 1:11 (6 April 2006)
 [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
14.


Research article    
Scoring functions for transcription factor binding site prediction
Friberg M, von Rohr P, Gonnet G
BMC Bioinformatics 2005, 6:84 (4 April 2005)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
15.


Software    
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Marinescu VD, Kohane IS, Riva A
BMC Bioinformatics 2005, 6:79 (30 March 2005)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
16.


Software    
Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
Baerends RJS, Smits WK, de Jong A, Hamoen LW, Kok J, Kuipers OP
Genome Biology 2004, 5:R37 (5 April 2004)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
17.


Software    
CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting
Bigelow HR, Wenick AS, Wong A, Hobert O
BMC Bioinformatics 2004, 5:27 (12 March 2004)
 [Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

This article is also cited by a further 37 articles in PubMed Central


You can also check ISI Web of Science for additional citations (subscription required)
printer friendly 
to  [Help]
Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us
© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.