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MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.
Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, Conklin BR
Genome Biol
2003,
4
:R7
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BioMed Central articles that cite the above article:
1.
Research
Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite
Eimeria
Prickett D, Watson M
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2007,
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Post hoc
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2007,
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2007,
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Hasegawa Y, Seki M, Mochizuki Y, Heida N, Hirosawa K, Okamoto N, Sakurai T, Satou M, Akiyama K, Iida K, Lee K, Kanaya S, Demura T, Shinozaki K, Konagaya A, Toyoda T
Plant Methods
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GO-Diff: Mining functional differentiation between EST-based transcriptomes
Chen Z, Wang W, Ling XB, Liu JJ, Chen L
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2006,
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Finding biological process modifications in cancer tissues by mining gene expression correlations
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Primary and secondary transcriptional effects in the developing human Down syndrome brain and heart
Mao R, Wang X, Spitznagel EL, Frelin LP, Ting JC, Ding H, Kim J, Ruczinski I, Downey TJ, Pevsner J
Genome Biology
2005,
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:R107
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2005,
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:225
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Methodology article
Automation of gene assignments to metabolic pathways using high-throughput expression data
Popescu L, Yona G
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2005,
6
:217
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2005,
6
:R81
(31 August 2005)
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41.
Research article
Dynamic covariation between gene expression and proteome characteristics
Sharabiani MTA, Siermala M, Lehtinen TO, Vihinen M
BMC Bioinformatics
2005,
6
:215
(30 August 2005)
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:201
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Methodology article
PAGE: Parametric Analysis of Gene Set Enrichment
Kim SY, Volsky DJ
BMC Bioinformatics
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Research article
Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes
Anderle P, Sengstag T, Mutch DM, Rumbo M, Praz V, Mansourian R, Delorenzi M, Williamson G, Roberts MA
BMC Genomics
2005,
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:69
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45.
Methodology article
In vitro
identification and
in silico
utilization of interspecies sequence similarities using GeneChip
®
technology
Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JGN
BMC Genomics
2005,
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:62
(4 May 2005)
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46.
Research
Identifying genetic networks underlying myometrial transition to labor
Salomonis N, Cotte N, Zambon AC, Pollard KS, Vranizan K, Doniger SW, Dolganov G, Conklin BR
Genome Biology
2005,
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:R12
(28 January 2005)
[
Abstract
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47.
Research article
Gene expression in the brain and kidney of rainbow trout in response to handling stress
Krasnov A, Koskinen H, Pehkonen P, Rexroad CE, Afanasyev S, Mölsä H
BMC Genomics
2005,
6
:3
(6 January 2005)
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Abstract
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48.
Methodology article
Comparing functional annotation analyses with Catmap
Breslin T, Edén P, Krogh M
BMC Bioinformatics
2004,
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:193
(9 December 2004)
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Abstract
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49.
Research article
Handling multiple testing while interpreting microarrays with the Gene Ontology Database
Osier MV, Zhao H, Cheung KH
BMC Bioinformatics
2004,
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:124
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Abstract
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50.
Methodology article
Graph-based iterative Group Analysis enhances microarray interpretation
Breitling R, Amtmann A, Herzyk P
BMC Bioinformatics
2004,
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51.
Research article
Expression profile of genes regulated by activity of the Na-H exchanger NHE1
Putney LK, Barber DL
BMC Genomics
2004,
5
:46
(16 July 2004)
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52.
Review
Science review: Searching for gene candidates in acute lung injury
Grigoryev DN, Finigan JH, Hassoun P, Garcia JGN
Critical Care
2004,
8
:440-447
(30 June 2004)
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53.
Software
Visualization and analysis of microarray and gene ontology data with treemaps
Baehrecke EH, Dang N, Babaria K, Shneiderman B
BMC Bioinformatics
2004,
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(28 June 2004)
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54.
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Method
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Grigoryev DN, Ma SF, Irizarry RA, Ye SQ, Quackenbush J, Garcia JGN
Genome Biology
2004,
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Breitling R, Amtmann A, Herzyk P
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57.
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BMC Bioinformatics
2004,
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(18 February 2004)
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