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An apology for orthologs - or brave new memes.
Koonin EV
Genome Biol 2001, 2:COMMENT1005
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Orthology prediction at scalable resolution by phylogenetic tree analysis
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BMC Bioinformatics 2007, 8:83 (8 March 2007)
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Using orthologous and paralogous proteins to identify specificity determining residues
Mirny LA, Gelfand MS
Genome Biology 2002, 3:preprint0002.1-preprint0002.20 (19 February 2002)
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 Correspondence    
Orthologs and paralogs - we need to get it right
Jensen RA
Genome Biology 2001, 2:interactions1002.1-interactions1002.3 (3 August 2001)
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