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A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis.
Le Flèche P, Hauck Y, Onteniente L, Prieur A, Denoeud F, Ramisse V, Sylvestre P, Benson G, Ramisse F, Vergnaud G
BMC Microbiol
2001,
1
:2
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BioMed Central articles that cite the above article:
1.
Research article
MLVA distribution characteristics of
Yersinia pestis
in China and the correlation analysis
Zhang X, Hai R, Wei J, Cui Z, Zhang E, Song Z, Yu D
BMC Microbiology
2009,
9
:205
(23 September 2009)
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2.
Research article
Bacillus anthracis
in China and its relationship to worldwide lineages
Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, Keim P
BMC Microbiology
2009,
9
:71
(15 April 2009)
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3.
Methodology article
Lab on a chip genotyping for
Brucella
spp. based on 15-loci multi locus VNTR analysis
De Santis R, Ciammaruconi A, Faggioni G, D'Amelio R, Marianelli C, Lista F
BMC Microbiology
2009,
9
:66
(7 April 2009)
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4.
Research article
Intragenic tandem repeat variation between
Legionella pneumophila
strains
Coil DA, Vandersmissen L, Ginevra C, Jarraud S, Lammertyn E, Anné J
BMC Microbiology
2008,
8
:218
(10 December 2008)
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5.
Methodology article
Fieldable genotyping of
Bacillus anthracis
and
Yersinia pestis
based on 25-loci Multi Locus VNTR Analysis
Ciammaruconi A, Grassi S, De Santis R, Faggioni G, Pittiglio V, D'Amelio R, Carattoli A, Cassone A, Vergnaud G, Lista F
BMC Microbiology
2008,
8
:21
(29 January 2008)
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6.
Research article
Tandem repeat regions within the
Burkholderia pseudomallei
genome and their application for high resolution genotyping
U'Ren JM, Schupp JM, Pearson T, Hornstra H, Friedman CLC, Smith KL, Daugherty RRL, Rhoton SD, Leadem B, Georgia S, Cardon M, Huynh LY, DeShazer D, Harvey SP, Robison R, Gal D, Mayo MJ, Wagner D, Currie BJ, Keim P
BMC Microbiology
2007,
7
:23
(30 March 2007)
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7.
Software
Tools for the identification of variable and potentially variable tandem repeats
O'Dushlaine CT, Shields DC
BMC Genomics
2006,
7
:290
(15 November 2006)
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8.
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Molecular characterization of
Coxiella burnetii
isolates by infrequent restriction site-PCR and MLVA typing
Arricau-Bouvery N, Hauck Y, Bejaoui A, Frangoulidis D, Bodier CC, Souriau A, Meyer H, Neubauer H, Rodolakis A, Vergnaud G
BMC Microbiology
2006,
6
:38
(26 April 2006)
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9.
Methodology article
Genotyping of
Bacillus anthracis
strains based on automated capillary 25-loci Multiple Locus Variable-Number Tandem Repeats Analysis
Lista F, Faggioni G, Valjevac S, Ciammaruconi A, Vaissaire J, le Doujet C, Gorgé O, De Santis R, Carattoli A, Ciervo A, Fasanella A, Orsini F, D'Amelio R, Pourcel C, Cassone A, Vergnaud G
BMC Microbiology
2006,
6
:33
(6 April 2006)
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10.
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Evaluation and selection of tandem repeat loci for a
Brucella
MLVA typing assay
Le Flèche P, Jacques I, Grayon M, Al Dahouk S, Bouchon P, Denoeud F, Nöckler K, Neubauer H, Guilloteau LA, Vergnaud G
BMC Microbiology
2006,
6
:9
(9 February 2006)
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11.
Research article
Evaluation and selection of tandem repeat loci for
Streptococcus pneumoniae
MLVA strain typing
Koeck JL, Njanpop-Lafourcade BM, Cade S, Varon E, Sangare L, Valjevac S, Vergnaud G, Pourcel C
BMC Microbiology
2005,
5
:66
(16 November 2005)
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12.
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Evaluation of the HOOF-Print assay for typing
Brucella abortus
strains isolated from cattle in the United States: results with four performance criteria
Bricker BJ, Ewalt DR
BMC Microbiology
2005,
5
:37
(23 June 2005)
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13.
Research article
Tandem repeats analysis for the high resolution phylogenetic analysis of
Yersinia pestis
Pourcel C, André-Mazeaud F, Neubauer H, Ramisse F, Vergnaud G
BMC Microbiology
2004,
4
:22
(8 June 2004)
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14.
Database
Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains : a web-based resource
Den
ud F, Vergnaud G
BMC Bioinformatics
2004,
5
:4
(12 January 2004)
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15.
Research
DNA fingerprinting of Shiga-toxin producing
Escherichia coli
O157 based on Multiple-Locus Variable-Number Tandem-Repeats Analysis (MLVA)
Lindstedt BA, Heir E, Gjernes E, Vardund T, Kapperud G
Annals of Clinical Microbiology and Antimicrobials
2003,
2
:12
(10 December 2003)
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16.
Research article
Diversity in coding tandem repeats in related
Neisseria
spp.
Jordan P, Snyder LAS, Saunders NJ
BMC Microbiology
2003,
3
:23
(12 November 2003)
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17.
Research article
High resolution, on-line identification of strains from the
Mycobacterium tuberculosis
complex based on tandem repeat typing
Le Flèche P, Fabre M, Denoeud F, Koeck JL, Vergnaud G
BMC Microbiology
2002,
2
:37
(27 November 2002)
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This article is also cited by a further
26 articles
in PubMed Central
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