This article is part of the supplement: UT-ORNL-KBRIN Bioinformatics Summit 2008 .

Poster presentation

Haplotypes of the imprinted insulin gene are associated with size for gestational age and umbilical cord IGF-II levels

Ronald Adkins¹ , Julia Krushkal², Chad Klauser⁴, Everett Magann⁵, Grant Somes², John Fain³ and John Morrison⁴

¹  Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA

²  Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN 38103, USA

³  Department of Molecular Sciences, University of Tennessee Health Science Center, Memphis, TN 38103, USA

⁴  Obstetrics and Gynecology, University of Mississippi Medical Center, Jackson, MS 39216, USA

⁵  Obstetrics and Gynecology, Naval Medical Center at Portsmouth, Portsmouth, VA 23708, USA

author email corresponding author email

from UT-ORNL-KBRIN Bioinformatics Summit 2008
Cadiz, KY, USA. 28–30 March 2008

BMC Bioinformatics 2008, 9(Suppl 7):P9doi:10.1186/1471-2105-9-S7-P9

The electronic version of this abstract is the complete one and can be found online at: http://www.biomedcentral.com/1471-2105/9/S7/P9

Published:

8 July 2008

© 2008 Adkins et al; licensee BioMed Central Ltd.

Objective

To test the association between haplotypes in the insulin – insulin-like growth factor 2 (IGF2) locus and both risk of small for gestational age birth and umbilical cord IGF-II levels.

Subjects

207 pairs of healthy African-American full-term, newborn and mothers from Memphis, Tennessee and Jackson, Mississippi.

Methods

Associations of individual SNPs and inferred haplotypes with risk of small for gestational age (SGA) birth were tested using logistic regression, and mean umbilical cord IGF-II levels were compared by ANOVA. The risk of SGA and differences in cord IGF-II were also compared according to the parental origin of haplotypes.

Results

In newborns three INS SNPs exhibited significant (p < 0.01) association with reduced SGA risk. Two of these SNPs were significantly associated with umbilical cord IGF-II levels. In the mothers, the alternate SNP alleles were associated with reduced risk of SGA. No maternal SNPs were associated with umbilical cord IGF-II levels. When analyzed according to parental origin of haplotypes, paternally transmitted haplotypes were significantly associated with risk of SGA and umbilical cord IGF-II levels, but maternally transmitted haplotypes were not significantly associated.

Conclusion

Newborn genotypes for polymorphisms near the 5' end of the insulin gene are significantly associated with size for gestational age and umbilical cord IGF-II levels, with a major effect due to the paternally inherited allele, which is preferentially expressed due to imprinting. There is some evidence that complementary haplotypes confer reduced risk of SGA in mothers and newborns.

Acknowledgements

This work was supported by grants from the NICHD, Le Bonheur Children's Medical Center and the Children's Foundation Research Center of Memphis.

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