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Items 1 - 20 of 122
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1:

LocateP: genome-scale subcellular-location predictor for bacterial proteins.

Zhou M, Boekhorst J, Francke C, Siezen RJ.

BMC Bioinformatics. 2008 Mar 27;9:173.

PMID: 18371216 [PubMed - indexed for MEDLINE]

2:

Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization.

Chou KC, Shen HB.

Biochem Biophys Res Commun. 2006 Aug 18;347(1):150-7. Epub 2006 Jun 21. Erratum in: Biochem Biophys Res Commun. 2006 Oct 6;348(4):1479.

PMID: 16808903 [PubMed - indexed for MEDLINE]

3:

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.

Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, Ester M, Brinkman FS.

Bioinformatics. 2005 Mar 1;21(5):617-23. Epub 2004 Oct 22.

PMID: 15501914 [PubMed - indexed for MEDLINE]

5:

Large-scale predictions of gram-negative bacterial protein subcellular locations.

Chou KC, Shen HB.

J Proteome Res. 2006 Dec;5(12):3420-8.

PMID: 17137343 [PubMed - indexed for MEDLINE]

6:

Protein subcellular localization prediction based on compartment-specific features and structure conservation.

Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2007 Sep 8;8:330.

PMID: 17825110 [PubMed - indexed for MEDLINE]

7:

pTARGET [corrected] a new method for predicting protein subcellular localization in eukaryotes.

Guda C, Subramaniam S.

Bioinformatics. 2005 Nov 1;21(21):3963-9. Epub 2005 Sep 6. Erratum in: Bioinformatics. 2005 Dec 15;21(24):4434.

PMID: 16144808 [PubMed - indexed for MEDLINE]

8:

Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.

Park KJ, Kanehisa M.

Bioinformatics. 2003 Sep 1;19(13):1656-63.

PMID: 12967962 [PubMed - indexed for MEDLINE]

10:

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

PMID: 17044936 [PubMed - indexed for MEDLINE]

11:

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

PMID: 17570145 [PubMed - indexed for MEDLINE]

12:

Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains.

Bulashevska A, Eils R.

BMC Bioinformatics. 2006 Jun 14;7:298.

PMID: 16774677 [PubMed - indexed for MEDLINE]

13:

Computational differentiation of N-terminal signal peptides and transmembrane helices.

Yuan Z, Davis MJ, Zhang F, Teasdale RD.

Biochem Biophys Res Commun. 2003 Dec 26;312(4):1278-83.

PMID: 14652012 [PubMed - indexed for MEDLINE]

14:

A computational pipeline for protein structure prediction and analysis at genome scale.

Shah M, Passovets S, Kim D, Ellrott K, Wang L, Vokler I, LoCascio P, Xu D, Xu Y.

Bioinformatics. 2003 Oct 12;19(15):1985-96.

PMID: 14555633 [PubMed - indexed for MEDLINE]

15:

MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition.

Höglund A, Dönnes P, Blum T, Adolph HW, Kohlbacher O.

Bioinformatics. 2006 May 15;22(10):1158-65. Epub 2006 Jan 20.

PMID: 16428265 [PubMed - indexed for MEDLINE]

16:

MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.

Guda C, Fahy E, Subramaniam S.

Bioinformatics. 2004 Jul 22;20(11):1785-94. Epub 2004 Mar 22.

PMID: 15037509 [PubMed - indexed for MEDLINE]

17:

PrediSi: prediction of signal peptides and their cleavage positions.

Hiller K, Grote A, Scheer M, Münch R, Jahn D.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W375-9.

PMID: 15215414 [PubMed - indexed for MEDLINE]

18:

Prediction of protein subcellular locations using a new measure of information discrepancy.

Jin L, Tang H, Fang W.

J Bioinform Comput Biol. 2005 Aug;3(4):915-27.

PMID: 16078367 [PubMed - indexed for MEDLINE]

19:

Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins.

Shen HB, Chou KC.

Protein Eng Des Sel. 2007 Jan;20(1):39-46. Epub 2007 Jan 23.

PMID: 17244638 [PubMed - indexed for MEDLINE]

20:

Prediction of subcellular protein localization based on functional domain composition.

Jia P, Qian Z, Zeng Z, Cai Y, Li Y.

Biochem Biophys Res Commun. 2007 Jun 1;357(2):366-70. Epub 2007 Apr 2.

PMID: 17428441 [PubMed - indexed for MEDLINE]

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