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1:

A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution.

Andersson JO, Sjögren AM, Horner DS, Murphy CA, Dyal PL, Svärd SG, Logsdon JM Jr, Ragan MA, Hirt RP, Roger AJ.

BMC Genomics. 2007 Feb 14;8:51.

PMID: 17298675 [PubMed - indexed for MEDLINE]

2:

Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes.

Andersson JO, Sjögren AM, Davis LA, Embley TM, Roger AJ.

Curr Biol. 2003 Jan 21;13(2):94-104.

PMID: 12546782 [PubMed - indexed for MEDLINE]

4:

A single eubacterial origin of eukaryotic pyruvate: ferredoxin oxidoreductase genes: implications for the evolution of anaerobic eukaryotes.

Horner DS, Hirt RP, Embley TM.

Mol Biol Evol. 1999 Sep;16(9):1280-91.

PMID: 10486982 [PubMed - indexed for MEDLINE]

5:

Evolution of glutamate dehydrogenase genes: evidence for lateral gene transfer within and between prokaryotes and eukaryotes.

Andersson JO, Roger AJ.

BMC Evol Biol. 2003 Jun 23;3:14. Epub 2003 Jun 23.

PMID: 12820901 [PubMed - indexed for MEDLINE]

6:

Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: implications for the evolutionary history of the double karyomastigont of diplomonads.

Kolisko M, Cepicka I, Hampl V, Leigh J, Roger AJ, Kulda J, Simpson AG, Flegr J.

BMC Evol Biol. 2008 Jul 15;8:205.

PMID: 18627633 [PubMed - indexed for MEDLINE]

7:

Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes.

Andersson JO, Hirt RP, Foster PG, Roger AJ.

BMC Evol Biol. 2006 Mar 21;6:27.

PMID: 16551352 [PubMed - indexed for MEDLINE]

8:

Primary structure and phylogenetic relationships of glyceraldehyde-3-phosphate dehydrogenase genes of free-living and parasitic diplomonad flagellates.

Rozario C, Morin L, Roger AJ, Smith MW, Müller M.

J Eukaryot Microbiol. 1996 Jul-Aug;43(4):330-40.

PMID: 8768438 [PubMed - indexed for MEDLINE]

9:

Genomic minimalism in the early diverging intestinal parasite Giardia lamblia.

Morrison HG, McArthur AG, Gillin FD, Aley SB, Adam RD, Olsen GJ, Best AA, Cande WZ, Chen F, Cipriano MJ, Davids BJ, Dawson SC, Elmendorf HG, Hehl AB, Holder ME, Huse SM, Kim UU, Lasek-Nesselquist E, Manning G, Nigam A, Nixon JE, Palm D, Passamaneck NE, Prabhu A, Reich CI, Reiner DS, Samuelson J, Svard SG, Sogin ML.

Science. 2007 Sep 28;317(5846):1921-6.

PMID: 17901334 [PubMed - indexed for MEDLINE]

10:

Unique phylogenetic relationships of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus and Trichomonas vaginalis.

Henze K, Horner DS, Suguri S, Moore DV, Sánchez LB, Müller M, Embley TM.

Gene. 2001 Dec 27;281(1-2):123-31.

PMID: 11750134 [PubMed - indexed for MEDLINE]

11:

Widespread and ancient distribution of a noncanonical genetic code in diplomonads.

Keeling PJ, Doolittle WF.

Mol Biol Evol. 1997 Sep;14(9):895-901.

PMID: 9287422 [PubMed - indexed for MEDLINE]

12:

A spliceosomal intron in Giardia lamblia.

Nixon JE, Wang A, Morrison HG, McArthur AG, Sogin ML, Loftus BJ, Samuelson J.

Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3701-5. Epub 2002 Feb 19.

PMID: 11854456 [PubMed - indexed for MEDLINE]

13:

Preliminary profile of the Cryptosporidium parvum genome: an expressed sequence tag and genome survey sequence analysis.

Strong WB, Nelson RG.

Mol Biochem Parasitol. 2000 Mar 15;107(1):1-32.

PMID: 10717299 [PubMed - indexed for MEDLINE]

14:

Gene transfers from nanoarchaeota to an ancestor of diplomonads and parabasalids.

Andersson JO, Sarchfield SW, Roger AJ.

Mol Biol Evol. 2005 Jan;22(1):85-90. Epub 2004 Sep 8.

PMID: 15356278 [PubMed - indexed for MEDLINE]

15:

Inferring protein function from genomic sequence: Giardia lamblia expresses a phosphatidylinositol kinase-related kinase similar to yeast and mammalian TOR.

Morrison HG, Zamora G, Campbell RK, Sogin ML.

Comp Biochem Physiol B Biochem Mol Biol. 2002 Dec;133(4):477-91.

PMID: 12470813 [PubMed - indexed for MEDLINE]

16:

Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria.

Kuo CH, Kissinger JC.

BMC Evol Biol. 2008 Apr 11;8:108.

PMID: 18405380 [PubMed - indexed for MEDLINE]

17:

A random sequencing approach for the analysis of the Trypanosoma cruzi genome: general structure, large gene and repetitive DNA families, and gene discovery.

Agüero F, Verdún RE, Frasch AC, Sánchez DO.

Genome Res. 2000 Dec;10(12):1996-2005.

PMID: 11116094 [PubMed - indexed for MEDLINE]

18:

Insights into a dinoflagellate genome through expressed sequence tag analysis.

Hackett JD, Scheetz TE, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Bhattacharya D.

BMC Genomics. 2005 May 29;6(1):80.

PMID: 15921535 [PubMed - indexed for MEDLINE]

19:

Sequence survey of the Giardia lamblia genome.

Smith MW, Aley SB, Sogin M, Gillin FD, Evans GA.

Mol Biochem Parasitol. 1998 Sep 15;95(2):267-80.

PMID: 9803418 [PubMed - indexed for MEDLINE]

20:

Stable transformation of an episomal protein-tagging shuttle vector in the piscine diplomonad Spironucleus vortens.

Dawson SC, Pham JK, House SA, Slawson EE, Cronembold D, Cande WZ.

BMC Microbiol. 2008 Apr 29;8:71.

PMID: 18445284 [PubMed - indexed for MEDLINE]

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