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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at INRA - Institut National de la Recherche Agronomique

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76.

Research article   Open Access

The arbuscular mycorrhizal status has an impact on the transcriptome profile and amino acid composition of tomato fruit

Alessandra Salvioli, Inès Zouari, Michel Chalot, Paola Bonfante BMC Plant Biology 2012, 12:44 (27 March 2012)

Abstract | Full text | PDF | PubMed

77.

Research   Open Access Highly Accessed

Host-pathogen interactome mapping for HTLV-1 and -2 retroviruses

Nicolas Simonis, Jean-François Rual, Irma Lemmens, Mathieu Boxus, Tomoko Hirozane-Kishikawa, Jean-Stéphane Gatot, Amélie Dricot, Tong Hao, Didier Vertommen, Sébastien Legros, Sarah Daakour, Niels Klitgord, Maud Martin, Jean-François Willaert, Franck Dequiedt, Vincent Navratil, Michael E Cusick, Arsène Burny, Carine Van Lint, David E Hill, Jan Tavernier, Richard Kettmann, Marc Vidal, Jean-Claude Twizere Retrovirology 2012, 9:26 (29 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This work employed a scalable methodology for the systematic mapping and comparison of pathogen-host protein interactions that includes stringent yeast two-hybrid screening and systematic retest, as well as two independent validations through an additional protein interaction detection method and a functional transactivation assay. The authors found 166 interactions between 10 viral proteins and 122 human proteins.

78.

Research article   Open Access Highly Accessed

Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana

Marios Markakis, Tinne De Cnodder, Michal Lewandowski, Damien Simon, Agnieszka Boron, Daria Balcerowicz, Thanaa Doubbo, Ludivine Taconnat, Jean-Pierre Renou, Herman Höfte, Jean-Pierre Verbelen, Kris Vissenberg BMC Plant Biology 2012, 12:208 (7 November 2012)

Abstract | Full text | PDF | PubMed

79.

Research article   Open Access Highly Accessed

Dietary vegetable oils do not alter the intestine transcriptome of gilthead sea bream (Sparus aurata), but modulate the transcriptomic response to infection with Enteromyxum leei

Josep A Calduch-Giner, Ariadna Sitjà-Bobadilla, Grace C Davey, Michael T Cairns, Sadasivam Kaushik, Jaume Pérez-Sánchez BMC Genomics 2012, 13:470 (11 September 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

80.

Methodology   Open Access

A simple and efficient method for the long-term preservation of plant cell suspension cultures

Anne-Marie Boisson, Elisabeth Gout, Richard Bligny, Corinne Rivasseau Plant Methods 2012, 8:4 (30 January 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The authors describe a very convenient way to preserve plant cell cultures that doesn't require any specialised equipment and avoids the use of freezing. A combination of low temperature (5oC) and a phosphate-free medium allows the cells to remain viable for 6 months and, importantly to resume active growth without a lag when they are returned to standard culture conditions.

81.

Research article   Open Access Highly Accessed

A genomics approach to understanding the role of auxin in apple (Malus x domestica) fruit size control

Fanny Devoghalaere, Thomas Doucen, Baptiste Guitton, Jeannette Keeling, Wendy Payne, Toby Ling, John Ross, Ian Hallett, Kularajathevan Gunaseelan, GA Dayatilake, Robert Diak, Ken C Breen, D Stuart Tustin, Evelyne Costes, David Chagné, Robert Schaffer, Karine David BMC Plant Biology 2012, 12:7 (13 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

82.

Research   Open Access

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

Anthony Levasseur, Elodie Drula, Vincent Lombard, Pedro M Coutinho, Bernard Henrissat Biotechnology for Biofuels 2013, 6:41 (21 March 2013)

Abstract | Full text | PDF | PubMed

83.

Review   Open Access

Guidelines for the diagnosis and management of chylomicron retention disease based on a review of the literature and the experience of two centers

Noel Peretti, Agnès Sassolas, Claude C Roy, Colette Deslandres, Mathilde Charcosset, Justine Castagnetti, Laurence Pugnet-Chardon, Philippe Moulin, Sylvie Labarge, Lise Bouthillier, Alain Lachaux, Emile Levy Orphanet Journal of Rare Diseases 2010, 5:24 (29 September 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

84.

Research article   Open Access Highly Accessed

Nutrigenomics in honey bees: digital gene expression analysis of pollen's nutritive effects on healthy and varroa-parasitized bees

Cédric Alaux, Christelle Dantec, Hughes Parrinello, Yves Le Conte BMC Genomics 2011, 12:496 (10 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

85.

Research   Open Access

A high utility integrated map of the pig genome

Sean J Humphray, Carol E Scott, Richard Clark, Brandy Marron, Clare Bender, Nick Camm, Jayne Davis, Andrew Jenks, Angela Noon, Manish Patel, Harminder Sehra, Fengtang Yang, Margarita B Rogatcheva, Denis Milan, Patrick Chardon, Gary Rohrer, Dan Nonneman, Pieter de Jong, Stacey N Meyers, Alan Archibald, Jonathan E Beever, Lawrence B Schook, Jane Rogers Genome Biology 2007, 8:R139 (11 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A new physical map of the bovine genome has been constructed by integrating data from genetic and radiation hybrid maps, and a new bovine BAC map, with the bovine genome draft assembly.

86.

Methodology article   Open Access Highly Accessed

Detecting long tandem duplications in genomic sequences

Eric Audemard, Thomas Schiex, Thomas Faraut BMC Bioinformatics 2012, 13:83 (8 May 2012)

Abstract | Full text | PDF | PubMed

87.

Research article   Open Access

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)

Jean-Marie Cornuet, Virgine Ravigné, Arnaud Estoup BMC Bioinformatics 2010, 11:401 (28 July 2010)

Abstract | Full text | PDF | PubMed

88.

Methodology   Open Access

The Arabidopsis thaliana-Alternaria brassicicola pathosystem: A model interaction for investigating seed transmission of necrotrophic fungi

Stephanie Pochon, Emmanuel Terrasson, Thomas Guillemette, Beatrice Iacomi-Vasilescu, Sonia Georgeault, Marjorie Juchaux, Romain Berruyer, Isabelle Debeaujon, Philippe Simoneau, Claire Campion Plant Methods 2012, 8:16 (9 May 2012)

Abstract | Full text | PDF | PubMed

89.

Research article   Open Access Highly Accessed

Biogenic amine production by the wine Lactobacillus brevis IOEB 9809 in systems that partially mimic the gastrointestinal tract stress

Pasquale Russo, Pilar Fernández de Palencia, Andrea Romano, María Fernández, Patrick Lucas, Giuseppe Spano, Paloma López BMC Microbiology 2012, 12:247 (31 October 2012)

Abstract | Full text | PDF | PubMed

90.

Research article   Open Access Highly Accessed

Functional Annotation, Genome Organization and Phylogeny of the Grapevine (Vitis vinifera) Terpene Synthase Gene Family Based on Genome Assembly, FLcDNA Cloning, and Enzyme Assays

Diane M Martin, Sébastien Aubourg, Marina B Schouwey, Laurent Daviet, Michel Schalk, Omid Toub , Steven T Lund, Jörg Bohlmann BMC Plant Biology 2010, 10:226 (21 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

91.

Review   Open Access Highly Accessed

Protein secretion in Lactococcus lactis : an efficient way to increase the overall heterologous protein production

Yves Le Loir, Vasco Azevedo, Sergio C Oliveira, Daniela A Freitas, Anderson Miyoshi, Luis G Bermúdez-Humarán, Sébastien Nouaille, Luciana A Ribeiro, Sophie Leclercq, Jane E Gabriel, Valeria D Guimaraes, Maricê N Oliveira, Cathy Charlier, Michel Gautier, Philippe Langella Microbial Cell Factories 2005, 4:2 (4 January 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

92.

Proceedings   Open Access

Lactococci and lactobacilli as mucosal delivery vectors for therapeutic proteins and DNA vaccines

Luis G Bermúdez-Humarán, Pascale Kharrat, Jean-Marc Chatel, Philippe Langella Microbial Cell Factories 2011, 10(Suppl 1):S4 (30 August 2011)

Abstract | Full text | PDF | PubMed

93.

Research   Open Access Highly Accessed

A physical map of the bovine genome

Warren M Snelling, Readman Chiu, Jacqueline E Schein, Matthew Hobbs, Colette A Abbey, David L Adelson, Jan Aerts, Gary L Bennett, Ian E Bosdet, Mekki Boussaha, Rudiger Brauning, Alexandre R Caetano, Marcos M Costa, Allan M Crawford, Brian P Dalrymple, André Eggen, Annelie Everts-van der Wind, Sandrine Floriot, Mathieu Gautier, Clare A Gill, Ronnie D Green, Robert Holt, Oliver Jann, Steven JM Jones, Steven M Kappes, John W Keele, Pieter J de Jong, Denis M Larkin, Harris A Lewin, John C McEwan et al. Genome Biology 2007, 8:R165 (14 August 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A new physical map of the bovine genome has been constructed by integrating data from genetic and radiation hybrid maps, and a new bovine BAC map, with the bovine genome draft assembly.

94.

Research article   Open Access

The embryonic leaf identity gene FUSCA3 regulates vegetative phase transitions by negatively modulating ethylene-regulated gene expression in Arabidopsis

Shelley Lumba, Yuichiro Tsuchiya, Frederic Delmas, Jodi Hezky, Nicholas J Provart, Qing Shi Lu, Peter McCourt, Sonia Gazzarrini BMC Biology 2012, 10:8 (20 February 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The transcription factor FUSCA3 is a temporal regulator of plant development, usually acting in the early embryo, but activation after germination results in interaction with ethylene signaling to control the timing of adult leaf development.

95.

Research article   Open Access

Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses

Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, Antonio Blanco, Jérôme Salse BMC Genomics 2012, 13:221 (6 June 2012)

Abstract | Full text | PDF | PubMed

96.

Research article   Open Access

Phylogeny and evolution of life-history strategies in the Sycophaginae non-pollinating fig wasps (Hymenoptera, Chalcidoidea)

Astrid Cruaud, Roula Jabbour-Zahab, Gwenaëlle Genson, Finn Kjellberg, Noppol Kobmoo, Simon van Noort, Yang Da-Rong, Peng Yan-Qiong, Rosichon Ubaidillah, Paul E Hanson, Otilene Santos-Mattos, Fernando HA Farache, Rodrigo AS Pereira, Carole Kerdelhué, Jean-Yves Rasplus BMC Evolutionary Biology 2011, 11:178 (22 June 2011)

Abstract | Full text | PDF | PubMed

97.

Research article   Open Access Highly Accessed

Cluster analysis application identifies muscle characteristics of importance for beef tenderness

Sghaier Chriki, Graham E Gardner, Catherine Jurie, Brigitte Picard, Didier Micol, Jean-Paul Brun, Laurent Journaux, Jean-Francois Hocquette BMC Biochemistry 2012, 13:29 (22 December 2012)

Abstract | Full text | PDF | PubMed

98.

Research article   Open Access Highly Accessed

Origin and evolution of the Notch signalling pathway: an overview from eukaryotic genomes

Eve Gazave, Pascal Lapébie, Gemma S Richards, Frédéric Brunet, Alexander V Ereskovsky, Bernard M Degnan, Carole Borchiellini, Michel Vervoort, Emmanuelle Renard BMC Evolutionary Biology 2009, 9:249 (13 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

99.

Method   Open Access

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays

Tatiana Popova, Elodie Manié, Dominique Stoppa-Lyonnet, Guillem Rigaill, Emmanuel Barillot, Marc Stern Genome Biology 2009, 10:R128 (11 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

GAP, a method for analyzing complex cancer genome profiles from SNP arrays, performs well even with poor quality data and rearranged genomes

100.

Research article   Open Access Highly Accessed

A neurochemical map of the developing amphioxus nervous system

Simona Candiani, Luca Moronti, Paola Ramoino, Michael Schubert, Mario Pestarino BMC Neuroscience 2012, 13:59 (7 June 2012)

Abstract | Full text | PDF | PubMed | 1 comment

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