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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Memorial Sloan Kettering Cancer Center

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1.

Research article   Open Access

Cancer-testis gene expression is associated with the methylenetetrahydrofolate reductase 677 C>T polymorphism in non-small cell lung carcinoma

Kerem M Senses, Mithat Gonen, Ahmet R Barutcu, Zeynep Kalaylioglu, Murat Isbilen, Ozlen Konu, Yao T Chen, Nasser K Altorki, Ali O Gure BMC Medical Genetics 2013, 14:97 (24 September 2013)

Abstract | Full text | PDF | PubMed

2.

Oral presentation   Open Access

Endogenous and exogenous regulation of gamma-secretase

Yueming Li Molecular Neurodegeneration 2013, 8(Suppl 1):O10 (13 September 2013)

Full text | PDF

3.

Methodology article   Open Access

Conditional and constitutive expression of a Tbx1-GFP fusion protein in mice

Laina Freyer, Sonja Nowotschin, Melinda K Pirity, Antonio Baldini, Bernice E Morrow BMC Developmental Biology 2013, 13:33 (23 August 2013)

Abstract | Full text | PDF | PubMed

4.

Method   Open Access Highly Accessed

Pathprinting: An integrative approach to understand the functional basis of disease

Gabriel M Altschuler, Oliver Hofmann, Irina Kalatskaya, Rebecca Payne, Shannan J Ho Sui, Uma Saxena, Andrei V Krivtsov, Scott A Armstrong, Tianxi Cai, Lincoln Stein, Winston A Hide Genome Medicine 2013, 5:68 (26 July 2013)

Abstract | Full text | PDF | PubMed | f1000 |  Editor’s summary

Pathprints, a pathway-analysis approach, integrates expression data across species and across platforms to provide functional genomic information and prognostic indicators of disease.

5.

Study protocol   Open Access

A phase 3 tRial comparing capecitabinE in combination with SorafenIb or pLacebo for treatment of locally advanced or metastatIc HER2-Negative breast CancEr (the RESILIENCE study): study protocol for a randomized controlled trial

José Baselga, Frederico Costa, Henry Gomez, Clifford A Hudis, Bernardo Rapoport, Henri Roche, Lee S Schwartzberg, Oana Petrenciuc, Minghua Shan, William J Gradishar Trials 2013, 14:228 (22 July 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access

Constraining the brachial plexus does not compromise regional control in oropharyngeal carcinoma

Robert W Mutter, Benjamin H Lok, Pinaki R Dutta, Nadeem Riaz, Jeremy Setton, Sean L Berry, Anuj Goenka, Zhigang Zhang, Shyam S Rao, Suzanne L Wolden, Nancy Y Lee Radiation Oncology 2013, 8:173 (9 July 2013)

Abstract | Full text | PDF | PubMed

7.

Methodology   Open Access

Langerhans-type and monocyte-derived human dendritic cells have different susceptibilities to mRNA electroporation with distinct effects on maturation and activation: implications for immunogenicity in dendritic cell-based immunotherapy

David J Chung, Emanuela Romano, Katherine B Pronschinske, Justin A Shyer, Milena Mennecozzi, Erin T St Angelo, James W Young Journal of Translational Medicine 2013, 11:166 (9 July 2013)

Abstract | Full text | PDF | PubMed

8.

Methodology   Open Access

Temporary organ displacement coupled with image-guided, intensity-modulated radiotherapy for paraspinal tumors

Evangelia Katsoulakis, Stephen B Solomon, Majid Maybody, Douglas Housman, Greg Niyazov, Nadeem Riaz, Michael Lovelock, Daniel E Spratt, Joseph P Erinjeri, Raymond H Thornton, Yoshiya Yamada Radiation Oncology 2013, 8:150 (24 June 2013)

Abstract | Full text | PDF | PubMed

9.

Letter   Free Highly Accessed

COMPLEXO: identifying the missing heritability of breast cancer via next generation collaboration

Melissa C Southey, Daniel J Park, Tu Nguyen-Dumont, Ian Campbell, Ella Thompson, Alison H Trainer, Georgia Chenevix-Trench, Jacques Simard, Martine Dumont, Penny Soucy, Mads Thomassen, Lars Jønson, Inge S Pedersen, Thomas VO Hansen, Heli Nevanlinna, Sofia Khan, Olga Sinilnikova, Sylvie Mazoyer, Fabienne Lesueur, Francesca Damiola, Rita Schmutzler, Alfons Meindl, Eric Hahnen, Michael R Dufault, TL Chris Chan, Ava Kwong, Rosa Barkardóttir, Paolo Radice, Paolo Peterlongo et al. Breast Cancer Research 2013, 15:402 (21 June 2013)

Abstract | Full text | PDF | PubMed

10.

Research   Open Access

Postoperative outcomes following pancreaticoduodenectomy: how should age affect clinical practice?

Walid Faraj, Raafat Alameddine, Deborah Mukherji, Khaled Musallam, Ali Haydar, Mohamed ELoubiedi, Ali Shamseddine, Ali Halal, Ghassan K Abou-Alfa, Eileen M O’Reilly, Faek Jamali, Mohamed Khalife World Journal of Surgical Oncology 2013, 11:131 (6 June 2013)

Abstract | Full text | PDF | PubMed

11.

Research article   Open Access

Cancer testis antigens and NY-BR-1 expression in primary breast cancer: prognostic and therapeutic implications

Dimitrios Balafoutas, Axel zur Hausen, Sebastian Mayer, Marc Hirschfeld, Markus Jaeger, Dominik Denschlag, Gerald Gitsch, Achim Jungbluth, Elmar Stickeler BMC Cancer 2013, 13:271 (3 June 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

12.

Original research   Open Access

Pilot study of PET imaging of 124I-iodoazomycin galactopyranoside (IAZGP), a putative hypoxia imaging agent, in patients with colorectal cancer and head and neck cancer

Joseph A O’Donoghue, José G Guillem, Heiko Schöder, Nancy Y Lee, Chaitanya R Divgi, Jeannine A Ruby, John L Humm, Steven A Lee-Kong, Eva M Burnazi, Shangde Cai, Sean D Carlin, Tobias Leibold, Pat B Zanzonico, C Ling EJNMMI Research 2013, 3:42 (3 June 2013)

Abstract | Full text | PDF | PubMed

13.

Research   Open Access

Revealing selection in cancer using the predicted functional impact of cancer mutations. Application to nomination of cancer drivers

B Reva BMC Genomics 2013, 14(Suppl 3):S8 (28 May 2013)

Abstract | Full text | PDF | PubMed

14.

Methods   Open Access

cWords - systematic microRNA regulatory motif discovery from mRNA expression data

Simon H Rasmussen, Anders Jacobsen, Anders Krogh Silence 2013, 4:2 (20 May 2013)

Abstract | Full text | PDF | PubMed

15.

Research   Open Access

Toxicity and outcomes of thoracic re-irradiation using stereotactic body radiation therapy (SBRT)

Marsha Reyngold, Abraham J Wu, Amanda McLane, Zhigang Zhang, Meier Hsu, Nicholas F Stein, Ying Zhou, Alice Y Ho, Kenneth E Rosenzweig, Ellen D Yorke, Andreas Rimner Radiation Oncology 2013, 8:99 (25 April 2013)

Abstract | Full text | PDF | PubMed

16.

Methodology article   Open Access Highly Accessed

A bright single-cell resolution live imaging reporter of Notch signaling in the mouse

Sonja Nowotschin, Panagiotis Xenopoulos, Nadine Schrode, Anna-Katerina Hadjantonakis BMC Developmental Biology 2013, 13:15 (25 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Transgenic mice expressing a nuclear-localized fluorescent protein driven by responsive elements, taken from the CBF1 transcription factor, allow single-cell resolution of the Notch signaling pathway, with greater sensitivity and resolution than previous reporter lines.  

17.

Viewpoint   Subscription

Activating mutations and senescence secretome: new insights into HER2 activation, drug sensitivity and metastatic progression

Swarnali Acharyya Breast Cancer Research 2013, 15:309 (23 April 2013)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access

Dimethylaminoparthenolide and gemcitabine: a survival study using a genetically engineered mouse model of pancreatic cancer

Michele T Yip-Schneider, Huangbing Wu, Keith Stantz, Narasimhan Agaram, Peter A Crooks, C Max Schmidt BMC Cancer 2013, 13:194 (17 April 2013)

Abstract | Full text | PDF | PubMed

19.

Proceedings   Open Access

An optimized algorithm for detecting and annotating regional differential methylation

Sheng Li, Francine E Garrett-Bakelman, Altuna Akalin, Paul Zumbo, Ross Levine, Bik L To, Ian D Lewis, Anna L Brown, Richard J D'Andrea, Ari Melnick, Christopher E Mason BMC Bioinformatics 2013, 14(Suppl 5):S10 (10 April 2013)

Abstract | Full text | PDF | PubMed

20.

Research article   Open Access Highly Accessed

Vaccinia virus GLV-1h153 is a novel agent for detection and effective local control of positive surgical margins for breast cancer

Sepideh Gholami, Chun-Hao Chen, Laurence J Belin, Emil Lou, Sho Fujisawa, Caroline Antonacci, Amanda Carew, Nanhai G Chen, Marina De Brot, Pat B Zanzonico, Aladar A Szalay, Yuman Fong Breast Cancer Research 2013, 15:R26 (18 March 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Oncolytic vaccinia virus, GLV1h-153, engineered to express the human sodium iodide symporter (hNIS) gene is useful in imaging cancers and can be used to identify and treat positive surgical margins of breast cancer in mice.

21.

Research article   Open Access

Embryonic mammary signature subsets are activated in Brca1-/- and basal-like breast cancers

Marketa Zvelebil, Erik Oliemuller, Qiong Gao, Olivia Wansbury, Alan Mackay, Howard Kendrick, Matthew J Smalley, Jorge S Reis-Filho, Beatrice A Howard Breast Cancer Research 2013, 15:R25 (18 March 2013)

Abstract | Full text | PDF | PubMed

22.

Oral presentation   Open Access

Using the lagging strand to study chromosome replication

S McGuffee, D Smith, I Whitehouse Epigenetics & Chromatin 2013, 6(Suppl 1):O2 (18 March 2013)

Full text | PDF

23.

Research   Open Access

Health-related quality of life and life satisfaction in colorectal cancer survivors: trajectories of adjustment

Jeff Dunn, Shu Ng, William Breitbart, Joanne Aitken, Pip Youl, Peter D Baade, Suzanne K Chambers Health and Quality of Life Outcomes 2013, 11:46 (14 March 2013)

Abstract | Full text | PDF | PubMed

24.

Research   Open Access

SSX2IP promotes metastasis and chemotherapeutic resistance of hepatocellular carcinoma

Pu Li, Ying Lin, Yu Zhang, Zhenggang Zhu, Keke Huo Journal of Translational Medicine 2013, 11:52 (1 March 2013)

Abstract | Full text | PDF | PubMed

25.

Research article   Open Access Highly Accessed

Sugary food and beverage consumption and epithelial ovarian cancer risk: a population-based case–control study

Melony G King, Sara H Olson, Lisa Paddock, Urmila Chandran, Kitaw Demissie, Shou-En Lu, Niyati Parekh, Lorna Rodriguez-Rodriguez, Elisa V Bandera BMC Cancer 2013, 13:94 (27 February 2013)

Abstract | Full text | PDF | PubMed

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