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CIRAD is a French research centre working with developing countries to tackle international agricultural and development issues. It has a global network of research and training platforms in partnership.

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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at CIRAD - Centre de Coopération Internationale en Recherche Agronomique pour le Dévelopement

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	1.	Research article *An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora* Pierre using microsatellite analysis** Philippe Cubry, Fabien de Bellis, Komlan Avia, Sophie Bouchet, David Pot, Magali Dufour, Hyacinthe Legnate, Thierry Leroy BMC Genomics 2013, 14:10 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Review *Driving forces for changes in geographical distribution of Ixodes ricinus* ticks in Europe** Jolyon M Medlock, Kayleigh M Hansford, Antra Bormane, Marketa Derdakova, Agustín Estrada-Peña, Jean-Claude George, Irina Golovljova, Thomas GT Jaenson, Jens-Kjeld Jensen, Per M Jensen, Maria Kazimirova, José A Oteo, Anna Papa, Kurt Pfister, Olivier Plantard, Sarah E Randolph, Annapaola Rizzoli, Maria Margarida Santos-Silva, Hein Sprong, Laurence Vial, Guy Hendrickx, Herve Zeller, Wim Van Bortel Parasites & Vectors 2013, 6:1 (2 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Ixodes ricinus ticks are changing in their European distribution at extremes of altitude and latitude, as well as within their prior range. Drivers for change include climate, landuse change, movement of wild animals and anthropogenic change. Image: A female Ixodes ricinus.
	3.	Research article Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus Adérito L Monjane, Daniel Pande, Francisco Lakay, Dionne N Shepherd, Eric van der Walt, Pierre Lefeuvre, Jean-Michel Lett, Arvind Varsani, Edward P Rybicki, Darren P Martin BMC Evolutionary Biology 2012, 12:252 (27 December 2012) Abstract \| Full text \| PDF \| PubMed
	4.	Research article Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis Piyanuch Piyatrakul, Riza-Arief Putranto, Florence Martin, Maryannick Rio, Florence Dessailly, Julie Leclercq, Jean-François Dufayard, Ludovic Lardet, Pascal Montoro BMC Plant Biology 2012, 12:244 (26 December 2012) Abstract \| Full text \| PDF \| PubMed
	5.	Research article Biosecurity measures for backyard poultry in developing countries: a systematic review Anne Conan, Flavie Luce Goutard, San Sorn, Sirenda Vong BMC Veterinary Research 2012, 8:240 (7 December 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Research Herding territories in Northern Cameroon and Western Burkina Faso: spatial arrangements and herd management Aime-Landry Dongmo, Eric Vall, Mohamadoun Diallo, Patrick Dugue, Aboubakar Njoya, Jean Lossouarn Pastoralism: Research, Policy and Practice 2012, 2:26 (3 December 2012) Abstract \| Full text \| PDF
	7.	Research article East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus Alexandre De Bruyn, Julie Villemot, Pierre Lefeuvre, Emilie Villar, Murielle Hoareau, Mireille Harimalala, Anli L Abdoul-Karime, Chadhouliati Abdou-Chakour, Bernard Reynaud, Gordon W Harkins, Arvind Varsani, Darren P Martin, Jean-Michel Lett BMC Evolutionary Biology 2012, 12:228 (27 November 2012) Abstract \| Full text \| PDF \| PubMed
	8.	Research article *Genomic insights into strategies used by Xanthomonas albilineans* with its reduced artillery to spread within sugarcane xylem vessels** Isabelle Pieretti, Monique Royer, Valérie Barbe, Sébastien Carrere, Ralf Koebnik, Arnaud Couloux, Armelle Darrasse, Jérôme Gouzy, Marie-Agnès Jacques, Emmanuelle Lauber, Charles Manceau, Sophie Mangenot, Stéphane Poussier, Béatrice Segurens, Boris Szurek, Valérie Verdier, Matthieu Arlat, Dean W Gabriel, Philippe Rott, Stéphane Cociancich BMC Genomics 2012, 13:658 (21 November 2012) Abstract \| Full text \| PDF \| PubMed
	9.	Research article *A reference genetic map of C. clementina* hort. ex Tan.; citrus evolution inferences from comparative mapping** Patrick Ollitrault, Javier Terol, Chunxian Chen, Claire T Federici, Samia Lotfy, Isabelle Hippolyte, Frédérique Ollitrault, Aurélie Bérard, Aurélie Chauveau, Jose Cuenca, Gilles Costantino, Yildiz Kacar, Lisa Mu, Andres Garcia-Lor, Yann Froelicher, Pablo Aleza, Anne Boland, Claire Billot, Luis Navarro, François Luro, Mikeal L Roose, Frederick G Gmitter, Manuel Talon, Dominique Brunel BMC Genomics 2012, 13:593 (5 November 2012) Abstract \| Full text \| PDF \| PubMed
	10.	Research Linking avian communities and avian influenza ecology in southern Africa using epidemiological functional groups Alexandre Caron, Michel de Garine-Wichatitsky, Mduduzi Ndlovu, Graeme S Cumming Veterinary Research 2012, 43:73 (26 October 2012) Abstract \| Full text \| PDF \| PubMed
	11.	Research article Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene Julien Pirrello, BC Narasimha Prasad, Wangshu Zhang, Kunsong Chen, Isabelle Mila, Mohamed Zouine, Alain Latché, Jean Claude Pech, Masaru Ohme-Takagi, Farid Regad, Mondher Bouzayen BMC Plant Biology 2012, 12:190 (11 October 2012) Abstract \| Full text \| PDF \| PubMed
	12.	Research article Risk map and spatial determinants of pancreas disease in the marine phase of Norwegian Atlantic salmon farming sites Saraya Tavornpanich, Mathilde Paul, Hildegunn Viljugrein, David Abrial, Daniel Jimenez, Edgar Brun BMC Veterinary Research 2012, 8:172 (24 September 2012) Abstract \| Full text \| PDF \| PubMed
	13.	Research *An in planta, Agrobacterium-mediated transient gene expression method for inducing gene silencing in rice (Oryza sativa* L.) leaves** Aurélie Andrieu, Jean Breitler, Christelle Siré, Donaldo Meynard, Pascal Gantet, Emmanuel Guiderdoni Rice 2012, 5:23 (31 August 2012) Abstract \| Full text \| PDF
	14.	Research article Temporal and spatial expression of polygalacturonase gene family members reveals divergent regulation during fleshy fruit ripening and abscission in the monocot species oil palm Peerapat Roongsattham, Fabienne Morcillo, Chatchawan Jantasuriyarat, Maxime Pizot, Steven Moussu, Dasuni Jayaweera, Myriam Collin, Zinnia H Gonzalez-Carranza, Philippe Amblard, James W Tregear, Somvong Tragoonrung, Jean-Luc Verdeil, Timothy J Tranbarger BMC Plant Biology 2012, 12:150 (25 August 2012) Abstract \| Full text \| PDF \| PubMed
	15.	Research Phenomics of rice early vigour and drought response: Are sugar related and morphogenetic traits relevant? Maria-Camila Rebolledo, Michael Dingkuhn, Anne Clément-Vidal, Lauriane Rouan, Delphine Luquet Rice 2012, 5:22 (20 August 2012) Abstract \| Full text \| PDF
	16.	Research Specific patterns of genetic diversity among aromatic rice varieties in Myanmar Khin Myint, Brigitte Courtois, Ange-Marie Risterucci, Julien Frouin, Khin Soe, Khin Thet, Apichart Vanavichit, Jean-Christophe Glaszmann Rice 2012, 5:20 (1 August 2012) Abstract \| Full text \| PDF
	17.	Research *Phenetic and genetic structure of tsetse fly populations (Glossina palpalis palpalis) in southern Ivory Coast* Dramane Kaba, Sophie Ravel, Geneviève Acapovi-Yao, Philippe Solano, Koffi Allou, Henriette Bosson-Vanga, Laetitia Gardes, Eliezer N’Goran, Christopher Schofield, Moussa Koné, Jean-Pierre Dujardin Parasites & Vectors 2012, 5:153 (30 July 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Geometric morphometrics and microsatellite methods applied to tsetse populations attempt to answer a recurrent question about vector control strategy: could different populations be treated sequentially, or should they be taken as one panmictic, single population? Image: Tsetse wing: venation patterns reveal population structure.
	18.	Research *Development and validation of IIKC: an interactive identification key for Culicoides* (Diptera: Ceratopogonidae) females from the Western Palaearctic region** Bruno Mathieu, Catherine Cêtre-Sossah, Claire Garros, David Chavernac, Thomas Balenghien, Simon Carpenter, Marie-Laure Setier-Rio, Régine Vignes-Lebbe, Visotheary Ung, Ermanno Candolfi, Jean-Claude Delécolle Parasites & Vectors 2012, 5:137 (9 July 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary We have created and validated the first interactive identification key for Culicoides (Diptera: Ceratopogonidae) females from the Western Palaearctic region (IIKC). Developed as a database for morphological identification, it was revealed to be a powerful back-up tool for training new taxonomists and to maintain expertise levels. Image: Name and icon of the key.
	19.	Research *Population dynamics of Anopheles gambiae s.l.* in Bobo-Dioulasso city: bionomics, infection rate and susceptibility to insecticides** Roch K Dabiré, Moussa Namountougou, Simon P Sawadogo, Lassina B Yaro, Hyacinthe K Toé, Ali Ouari, Louis-Clément Gouagna, Frédéric Simard, Fabrice Chandre, Thierry Baldet, Chris Bass, Abdoulaye Diabaté Parasites & Vectors 2012, 5:127 (21 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary We describe the population dynamics of An. gambiae s.l. in Bobo-Dioulasso, Burkina Faso, where over the last ten years An. arabiensis has replaced other species as the major malaria vector. We found that An. arabiensis populations in this region are resistant to DDT but do not carry the L1014F knock down resistance mutation suggesting that alternative mechanisms underly resistance. The ecological factors that enhance the settlement of this species into peri-urban and urban areas are discussed. Image: An old traditional mosque in Dioulassoba, the central quarter of Bobo-Dioulasso (Burkina Faso).
	20.	Research article Biogeographic and diversification patterns of Neotropical Troidini butterflies (Papilionidae) support a museum model of diversity dynamics for Amazonia Fabien L Condamine, Karina L Silva-Brandão, Gael J Kergoat, Felix AH Sperling BMC Evolutionary Biology 2012, 12:82 (12 June 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Research article A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs Richard Guyon, Michaelle Rakotomanga, Naoual Azzouzi, Jean Pierre Coutanceau, Celine Bonillo, Helena D’Cotta, Elodie Pepey, Lucile Soler, Marguerite Rodier-Goud, Angelique D’Hont, Matthew A Conte, Nikkie EM van Bers, David J Penman, Christophe Hitte, Richard PMA Crooijmans, Thomas D Kocher, Catherine Ozouf-Costaz, Jean Baroiller, Francis Galibert BMC Genomics 2012, 13:222 (6 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	22.	Short Report A shot in the genome: how accurately do shotgun 454 sequences represent a genome? Emese Meglécz, Nicolas Pech, André Gilles, Jean-François Martin, Michael G Gardner BMC Research Notes 2012, 5:259 (28 May 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research article Effect of adjuvants on the humoral immune response to congopain in mice and cattle John Kateregga, George W Lubega, Erik B Lindblad, Edith Authié, Theresa Helen Coetzer, Alain François Boulangé BMC Veterinary Research 2012, 8:63 (23 May 2012) Abstract \| Full text \| PDF \| PubMed
	24.	Research article *Asexual reproduction induces a rapid and permanent loss of sexual reproduction capacity in the rice fungal pathogen Magnaporthe oryzae: results of in vitro* experimental evolution assays** Dounia Saleh, Joëlle Milazzo, Henri Adreit, Didier Tharreau, Elisabeth Fournier BMC Evolutionary Biology 2012, 12:42 (29 March 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Research article *Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora* and Solanum Sp.) and rosid (Vitis vinifera) clades** Romain Guyot, Florent Lefebvre-Pautigny, Christine Tranchant-Dubreuil, Michel Rigoreau, Perla Hamon, Thierry Leroy, Serge Hamon, Valérie Poncet, Dominique Crouzillat, Alexandre de Kochko BMC Genomics 2012, 13:103 (20 March 2012) Abstract \| Full text \| PDF \| PubMed