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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at BC Cancer Agency

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	1.	Methodology article Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies Lucas Swanson, Gordon Robertson, Karen L Mungall, Yaron S Butterfield, Readman Chiu, Richard D Corbett, T Docking, Donna Hogge, Shaun D Jackman, Richard A Moore, Andrew J Mungall, Ka Nip, Jeremy DK Parker, Jenny Qian, Anthony Raymond, Sandy Sung, Angela Tam, Nina Thiessen, Richard Varhol, Sherry Wang, Deniz Yorukoglu, YongJun Zhao, Pamela A Hoodless, S Sahinalp, Aly Karsan, Inanc Birol BMC Genomics 2013, 14:550 (14 August 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Research article Cost-effectiveness of MRI for breast cancer screening in BRCA1/2 mutation carriers Reka Pataky, Linlea Armstrong, Stephen Chia, Andrew J Coldman, Charmaine Kim-Sing, Barbara McGillivray, Jenna Scott, Christine M Wilson, Stuart Peacock BMC Cancer 2013, 13:339 (10 July 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research Oh baby! Motivation for healthy eating during parenthood transitions: a longitudinal examination with a theory of planned behavior perspective Rebecca L Bassett-Gunter, Ryna Levy-Milne, Patti Jean Naylor, Danielle Symons Downs, Cecilia Benoit, Darren E R Warburton, Chris M Blanchard, Ryan E Rhodes International Journal of Behavioral Nutrition and Physical Activity 2013, 10:88 (6 July 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research A phase II study of sorafenib (BAY 43–9006) in recurrent diffuse large B cell lymphoma: an eastern cooperative oncology group study (E1404) Daniel R Greenwald, Hailun Li, Selina M Luger, Ronald S Go, David King, Taral Patel, Randy D Gascoyne, Jill Kolesar, Brad S Kahl, Sandra Horning Journal of Hematology & Oncology 2013, 6:46 (5 July 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research article The prevalence of human papillomavirus and its impact on cervical dysplasia in Northern Canada Ying Jiang, Paul Brassard, Alberto Severini, Yang Mao, Y Li, Julie Laroche, Susan Chatwood, Andre Corriveau, Kami Kandola, Brendan Hanley, Isaac Sobol, Muna Ar-Rushdi, Gordon Johnson, Jane Lo, Sam Ratnam, Tom Wong, Alain Demers, Gayatri Jayaraman, Stephanie Totten, Howard Morrison Infectious Agents and Cancer 2013, 8:25 (1 July 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Methodology article Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline Alireza Hadj Khodabakhshi, Anthony P Fejes, Inanc Birol, Steven JM Jones BMC Bioinformatics 2013, 14:167 (28 May 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Research Co-occurrence of anaerobic bacteria in colorectal carcinomas René L Warren, Douglas J Freeman, Stephen Pleasance, Peter Watson, Richard A Moore, Kyla Cochrane, Emma Allen-Vercoe, Robert A Holt Microbiome 2013, 1:16 (15 May 2013) Abstract \| Full text \| PDF
	8.	Research article Mortality among British Columbians testing for hepatitis C antibody Amanda Yu, John J Spinelli, Darrel A Cook, Jane A Buxton, Mel Krajden BMC Public Health 2013, 13:291 (2 April 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Debate Enhancing the scoping study methodology: a large, inter-professional team’s experience with Arksey and O’Malley’s framework Helena ML Daudt, Catherine van Mossel, Samantha J Scott BMC Medical Research Methodology 2013, 13:48 (23 March 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Research Template-based breast IMRT planning for increased workload efficiency Sonia Kim Anh Nguyen, Fred Cao, Ramani Ramaseshan, Sarah Kristensen, Krista Kuncewicz, Vicky Huang, Craig Elith, Peter Steiner, Jennifer Hayes, Beverly Lester, Cheryl McGregor, Bilal Shahine, Winkle Kwan Radiation Oncology 2013, 8:67 (20 March 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Original research article Cyclin D1 overexpression is associated with poor prognosis in oropharyngeal cancer Rui Jun Lin, Tarinee Lubpairee, Kelly Y Liu, Donald W Anderson, Scott Durham, Catherine F Poh Journal of Otolaryngology - Head and Neck Surgery 2013, 42:23 (19 March 2013) Abstract \| Full text \| PDF \| PubMed
	12.	Review Molecular features in arsenic-induced lung tumors Roland Hubaux, Daiana D Becker-Santos, Katey SS Enfield, David Rowbotham, Stephen Lam, Wan L Lam, Victor D Martinez Molecular Cancer 2013, 12:20 (19 March 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Research Small cell ovarian carcinoma: genomic stability and responsiveness to therapeutics Lisa F Gamwell, Karen Gambaro, Maria Merziotis, Colleen Crane, Suzanna L Arcand, Valerie Bourada, Christopher Davis, Jeremy A Squire, David G Huntsman, Patricia N Tonin, Barbara C Vanderhyden Orphanet Journal of Rare Diseases 2013, 8:33 (21 February 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Research Time series analysis of fine particulate matter and asthma reliever dispensations in populations affected by forest fires Catherine T Elliott, Sarah B Henderson, Victoria Wan Environmental Health 2013, 12:11 (28 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Dr C. Elliott and colleagues monitor the impact of chronic lung diseases by measuring dispensation of Salubutamol in forest fire afflicted regions in British Columbia.
	15.	Research Population-based outcomes after brain radiotherapy in patients with brain metastases from breast cancer in the Pre-Trastuzumab and Trastuzumab eras Irene Karam, Sarah Hamilton, Alan Nichol, Ryan Woods, Caroline Speers, Hagen Kennecke, Scott Tyldesley Radiation Oncology 2013, 8:12 (9 January 2013) Abstract \| Full text \| PDF \| PubMed
	16.	Method DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer Ali Bashashati, Gholamreza Haffari, Jiarui Ding, Gavin Ha, Kenneth Lui, Jamie Rosner, David G Huntsman, Carlos Caldas, Samuel A Aparicio, Sohrab P Shah Genome Biology 2012, 13:R124 (22 December 2012) Abstract \| Full text \| PDF \| PubMed \| 1 comment \| Editor’s summary DriverNet is a method for identifying driver mutations in cancer samples based on their effects on the transcriptional network
	17.	Method Derivation of HLA types from shotgun sequence datasets René L Warren, Gina Choe, Douglas J Freeman, Mauro Castellarin, Sarah Munro, Richard Moore, Robert A Holt Genome Medicine 2012, 4:95 (10 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary HLAminer is a computational tool to identify Human Leukocyte Antigen (HLA) alleles directly from sequence reads, reducing the need for targeted amplification of HLA-specific gene segments.
	18.	Review Engaging people who use drugs in policy and program development: A review of the literature Lianping Ti, Despina Tzemis, Jane A Buxton Substance Abuse Treatment, Prevention, and Policy 2012, 7:47 (24 November 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Original research Quantitative hormone therapy follow-up in an ER+/ERαKD mouse tumor model using FDG and [¹¹C]-methionine PET imaging Michel Paquette, Sébastien Tremblay, Francois Bénard, Roger Lecomte EJNMMI Research 2012, 2:61 (9 November 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Research article Trends in postpartum hemorrhage from 2000 to 2009: a population-based study Azar Mehrabadi, Jennifer A Hutcheon, Lily Lee, Robert M Liston, KS Joseph BMC Pregnancy and Childbirth 2012, 12:108 (11 October 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Study protocol Stereotactic ablative radiotherapy for comprehensive treatment of oligometastatic tumors (SABR-COMET): Study protocol for a randomized phase II trial David A Palma, Cornelis J A Haasbeek, George B Rodrigues, Max Dahele, Michael Lock, Brian Yaremko, Robert Olson, Mitchell Liu, Jason Panarotto, GwendolynHMJ Griffioen, Stewart Gaede, Ben Slotman, Suresh Senan BMC Cancer 2012, 12:305 (23 July 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research article Structural characterization of S100A15 reveals a novel zinc coordination site among S100 proteins and altered surface chemistry with functional implications for receptor binding Jill I Murray, Michelle L Tonkin, Amanda L Whiting, Fangni Peng, Benjamin Farnell, Jay T Cullen, Fraser Hof, Martin J Boulanger BMC Structural Biology 2012, 12:16 (2 July 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research Relationships between family physicians’ referral for palliative radiotherapy, knowledge of indications for radiotherapy, and prior training: a survey of rural and urban family physicians Robert A Olson, Sonca Lengoc, Scott Tyldesley, John French, Colleen McGahan, Jenny Soo Radiation Oncology 2012, 7:73 (18 May 2012) Abstract \| Full text \| PDF \| PubMed
	24.	Research Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel Marieke Simonis, Santosh S Atanur, Sam Linsen, Victor Guryev, Frans-Paul Ruzius, Laurence Game, Nico Lansu, Ewart de Bruijn, Sebastiaan van Heesch, Steven JM Jones, Michal Pravenec, Tim J Aitman, Edwin Cuppen Genome Biology 2012, 13:r31 (27 April 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The genome and transcriptome sequences of the founder strains of the HXB/BXH panel of recombinant inbred rat strains
	25.	Meeting abstract Benign serous ovarian tumour: a redefining moment? Sally Hunter, Kylie Gorringe, Michael Anglesio, Raghwa Sharma, Blake Gilks, Anna deFazio, David Huntsman, Ian Campbell Hereditary Cancer in Clinical Practice 2012, 10(Suppl 2):A83 (12 April 2012) Full text \| PDF