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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at INRIA

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1.

Research   Open Access

Spatial location priors for Gaussian model based reverberant audio source separation

Ngoc QK Duong, Emmanuel Vincent, Rémi Gribonval EURASIP Journal on Advances in Signal Processing 2013, 2013:149 (23 September 2013)

Abstract | Provisional PDF

2.

Research   Open Access Highly Accessed

Space-efficient and exact de Bruijn graph representation based on a Bloom filter

Rayan Chikhi, Guillaume Rizk Algorithms for Molecular Biology 2013, 8:22 (16 September 2013)

Abstract | Full text | PDF | PubMed

3.

Research article   Open Access

Comparative genomics of emerging pathogens in the Candida glabrata clade

Toni Gabaldón, Tiphaine Martin, Marina Marcet-Houben, Pascal Durrens, Monique Bolotin-Fukuhara, Olivier Lespinet, Sylvie Arnaise, Stéphanie Boisnard, Gabriela Aguileta, Ralitsa Atanasova, Christiane Bouchier, Arnaud Couloux, Sophie Creno, Jose Almeida Cruz, Hugo Devillers, Adela Enache-Angoulvant, Juliette Guitard, Laure Jaouen, Laurence Ma, Christian Marck, Cécile Neuvéglise, Eric Pelletier, Amélie Pinard, Julie Poulain, Julien Recoquillay, Eric Westhof, Patrick Wincker, Bernard Dujon, Christophe Hennequin, Cécile Fairhead BMC Genomics 2013, 14:623 (14 September 2013)

Abstract | Full text | PDF | PubMed

4.

Research article   Open Access Highly Accessed

Learning a Markov Logic network for supervised gene regulatory network inference

Céline Brouard, Christel Vrain, Julie Dubois, David Castel, Marie-Anne Debily, Florence d’Alché-Buc BMC Bioinformatics 2013, 14:273 (12 September 2013)

Abstract | Full text | PDF | PubMed

5.

Research article   Open Access Highly Accessed

Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers

João MP Alves, Cecilia C Klein, Flávia da Silva, André G Costa-Martins, Myrna G Serrano, Gregory A Buck, Ana Tereza R Vasconcelos, Marie-France Sagot, Marta MG Teixeira, Maria Cristina M Motta, Erney P Camargo BMC Evolutionary Biology 2013, 13:190 (9 September 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access

Voluntary EMG-to-force estimation with a multi-scale physiological muscle model

Mitsuhiro Hayashibe, David Guiraud BioMedical Engineering OnLine 2013, 12:86 (4 September 2013)

Abstract | Full text | PDF | PubMed

7.

Research   Open Access

Analytical Insights on Theta-Gamma Coupled Neural Oscillators

Lorenzo Fontolan, Maciej Krupa, Alexandre Hyafil, Boris Gutkin The Journal of Mathematical Neuroscience 2013, 3:16 (14 August 2013)

Abstract | Full text | PDF | PubMed

8.

Research   Open Access

Distributed Nonlocal Feedback Delays May Destabilize Fronts in Neural Fields, Distributed Transmission Delays Do Not

Axel Hutt, Linghai Zhang The Journal of Mathematical Neuroscience 2013, 3:9 (30 July 2013)

Abstract | Full text | PDF | PubMed

9.

Research   Open Access Highly Accessed

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Keith R Bradnam, Joseph N Fass, Anton Alexandrov, Paul Baranay, Michael Bechner, Inanç Birol, Sébastien Boisvert, Jarrod A Chapman, Guillaume Chapuis, Rayan Chikhi, Hamidreza Chitsaz, Wen-Chi Chou, Jacques Corbeil, Cristian Del Fabbro, T Docking, Richard Durbin, Dent Earl, Scott Emrich, Pavel Fedotov, Nuno A Fonseca, Ganeshkumar Ganapathy, Richard A Gibbs, Sante Gnerre, Élénie Godzaridis, Steve Goldstein, Matthias Haimel, Giles Hall, David Haussler, Joseph B Hiatt, Isaac Y Ho et al. GigaScience 2013, 2:10 (22 July 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Assemblathon 2 is the largest systematic assessment of how the process of genome assembly is carried out, with 21 participating teams submitting 43 entries based on data from 3 different genomes

10.

Poster presentation   Open Access

Solving dynamical systems in neuromorphic hardware: simulation studies using balanced spiking networks

Anna S Bulanova, Olivier Temam, Rodolphe Heliot BMC Neuroscience 2013, 14(Suppl 1):P382 (8 July 2013)

Full text | PDF

11.

Poster presentation   Open Access

First spike latency sensitivity of spiking neuron models

Laura Trotta, Alessio Franci, Rodolphe Sepulchre BMC Neuroscience 2013, 14(Suppl 1):P354 (8 July 2013)

Full text | PDF

12.

Poster presentation   Open Access

A computational view of area 3b of primary somatosensory cortex

Georgios IS Detorakis, Nicolas P Rougier BMC Neuroscience 2013, 14(Suppl 1):P333 (8 July 2013)

Full text | PDF

13.

Poster presentation   Open Access

A large deviation principle for networks of rate neurons with correlated synaptic weights

Olivier Faugeras, James MacLaurin BMC Neuroscience 2013, 14(Suppl 1):P252 (8 July 2013)

Full text | PDF

14.

Poster presentation   Open Access

Neural field simulator: fast computation and 3D-visualization

Eric J Nichols, Axel Hutt BMC Neuroscience 2013, 14(Suppl 1):P179 (8 July 2013)

Full text | PDF

15.

Poster presentation   Open Access

Effects of tonic inhibition on a cortical neuronal population: implications for general anesthesia under propofol

Laure Buhry, Axel Hutt BMC Neuroscience 2013, 14(Suppl 1):P178 (8 July 2013)

Full text | PDF

16.

Poster presentation   Open Access

A thalamo-cortical model to explain EEG during anaesthesia

Meysam Hashemi, Axel Hutt BMC Neuroscience 2013, 14(Suppl 1):P177 (8 July 2013)

Full text | PDF

17.

Poster presentation   Open Access

Beyond dynamical mean-field theory of neural networks

Massimiliano Muratori, Bruno Cessac BMC Neuroscience 2013, 14(Suppl 1):P60 (8 July 2013)

Full text | PDF

18.

Poster presentation   Open Access

A maximum likelihood estimator of neural network synaptic weights

Wahiba Taouali, Bruno Cessac BMC Neuroscience 2013, 14(Suppl 1):P59 (8 July 2013)

Full text | PDF

19.

Poster presentation   Open Access

Dynamics and spike trains statistics in conductance-based Integrate-and-Fire neural networks with chemical and electric synapses

Rodrigo Cofre, Bruno Cessac BMC Neuroscience 2013, 14(Suppl 1):P58 (8 July 2013)

Full text | PDF

20.

Poster presentation   Open Access

EnaS: a new software for neural population analysis in large scale spiking networks

Hassan Nasser, Selim Kraria, Bruno Cessac BMC Neuroscience 2013, 14(Suppl 1):P57 (8 July 2013)

Full text | PDF

21.

Poster presentation   Open Access

Impact of the Konio pathway in the thalamocortical visual system: a modeling study

Carlos Carvajal, Thierry Viéville, Frédéric Alexandre BMC Neuroscience 2013, 14(Suppl 1):P6 (8 July 2013)

Full text | PDF

22.

Oral presentation   Open Access

Endocannabinoids mediate spike-timing dependent potentiation and depression: a model-based experimental approach

Yihui Cui, Vincent Paille, Bruno Delord, Stéphane Genet, Elodie Fino, Laurent Venance, Hugues Berry BMC Neuroscience 2013, 14(Suppl 1):O1 (8 July 2013)

Full text | PDF

23.

Research   Open Access

Acoustic-visual synthesis technique using bimodal unit-selection

Slim Ouni, Vincent Colotte, Utpala Musti, Asterios Toutios, Brigitte Wrobel-Dautcourt, Marie-Odile Berger, Caroline Lavecchia EURASIP Journal on Audio, Speech, and Music Processing 2013, 2013:16 (27 June 2013)

Abstract | Full text | PDF

24.

Research article   Open Access Highly Accessed

Integrative relational machine-learning for understanding drug side-effect profiles

Emmanuel Bresso, Renaud Grisoni, Gino Marchetti, Arnaud Karaboga, Souchet, Marie-Dominique Devignes, Malika Smaïl-Tabbone BMC Bioinformatics 2013, 14:207 (26 June 2013)

Abstract | Full text | PDF | PubMed

25.

Research article   Open Access Highly Accessed

Learning smoothing models of copy number profiles using breakpoint annotations

Toby Hocking, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Valentina Boeva, Julie Cappo, Olivier Delattre, Francis Bach, Jean-Philippe Vert BMC Bioinformatics 2013, 14:164 (22 May 2013)

Abstract | Full text | PDF | PubMed

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