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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at The Jackson Laboratory

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	26.	Method Integrating phenotype ontologies across multiple species Christopher J Mungall, Georgios V Gkoutos, Cynthia L Smith, Melissa A Haendel, Suzanna E Lewis, Michael Ashburner Genome Biology 2010, 11:R2 (8 January 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A phenotypic ontology that can be used for the analysis of phenotype-genotype data across multiple species, paving the way for truly cross species translational research.
	27.	Research article *An experimental assessment of in silico* haplotype association mapping in laboratory mice** Sarah L Burgess-Herbert, Shirng-Wern Tsaih, Ioannis M Stylianou, Kenneth Walsh, Allison J Cox, Beverly Paigen BMC Genetics 2009, 10:81 (9 December 2009) Abstract \| Full text \| PDF \| PubMed
	28.	Short Report Comparison of threshold selection methods for microarray gene co-expression matrices Bhavesh R Borate, Elissa J Chesler, Michael A Langston, Arnold M Saxton, Brynn H Voy BMC Research Notes 2009, 2:240 (2 December 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	29.	Software MouseCyc: a curated biochemical pathways database for the laboratory mouse Alexei V Evsikov, Mary E Dolan, Michael P Genrich, Emily Patek, Carol J Bult Genome Biology 2009, 10:R84 (14 August 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary MouseCyc is a database of curated metabolic pathways for the laboratory mouse.
	30.	Research article Parental origin of chromosomes influences crossover activity within the Kcnq1 transcriptionally imprinted domain of Mus musculus Siemon H Ng, Rose Madeira, Emil D Parvanov, Lorin M Petros, Petko M Petkov, Kenneth Paigen BMC Molecular Biology 2009, 10:43 (13 May 2009) Abstract \| Full text \| PDF \| PubMed
	31.	Proceedings TGF-beta signaling proteins and the Protein Ontology Cecilia N Arighi, Hongfang Liu, Darren A Natale, Winona C Barker, Harold Drabkin, Judith A Blake, Barry Smith, Cathy H Wu BMC Bioinformatics 2009, 10(Suppl 5):S3 (6 May 2009) Abstract \| Full text \| PDF \| PubMed
	32.	Research article *Mouse H6 Homeobox 1 (Hmx1) mutations cause cranial abnormalities and reduced body mass* Robert J Munroe, Vinay Prabhu, Greg M Acland, Kenneth R Johnson, Belinda S Harris, Tim P O'Brien, Ian C Welsh, Drew M Noden, John C Schimenti BMC Developmental Biology 2009, 9:27 (20 April 2009) Abstract \| Full text \| PDF \| PubMed
	33.	Research article Chromosome Y variants from different inbred mouse strains are linked to differences in the morphologic and molecular responses of cardiac cells to postpubertal testosterone Bastien Llamas, Ricardo A Verdugo, Gary A Churchill, Christian F Deschepper BMC Genomics 2009, 10:150 (7 April 2009) Abstract \| Full text \| PDF \| PubMed
	34.	Research Transforming growth factor-β1 impairs neuropathic pain through pleiotropic effects Stefania Echeverry, Xiang Shi, Alexandra Haw, Hong Liu, Zhong-wei Zhang, Ji Zhang Molecular Pain 2009, 5:16 (27 March 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	35.	Research article An improved ontological representation of dendritic cells as a paradigm for all cell types Anna Masci, Cecilia N Arighi, Alexander D Diehl, Anne E Lieberman, Chris Mungall, Richard H Scheuermann, Barry Smith, Lindsay G Cowell BMC Bioinformatics 2009, 10:70 (25 February 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 3 comments
	36.	Short Report *Epiblast-specific Snai1* deletion results in embryonic lethality due to multiple vascular defects** Hilda Lomelí, Christa Starling, Thomas Gridley BMC Research Notes 2009, 2:22 (6 February 2009) Abstract \| Full text \| PDF \| PubMed
	37.	Proceedings PhenoGO: an integrated resource for the multiscale mining of clinical and biological data Lee T Sam, Eneida A Mendonça, Jianrong Li, Judith Blake, Carol Friedman, Yves A Lussier BMC Bioinformatics 2009, 10(Suppl 2):S8 (5 February 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	38.	Correspondence Muscle Research and Gene Ontology: New standards for improved data integration Erika Feltrin, Stefano Campanaro, Alexander D Diehl, Elisabeth Ehler, Georgine Faulkner, Jennifer Fordham, Chiara Gardin, Midori Harris, David Hill, Ralph Knoell, Paolo Laveder, Lorenza Mittempergher, Alessandra Nori, Carlo Reggiani, Vincenzo Sorrentino, Pompeo Volpe, Ivano Zara, Giorgio Valle, Jennifer Deegan née Clark BMC Medical Genomics 2009, 2:6 (29 January 2009) Abstract \| Full text \| PDF \| PubMed
	39.	Research article *Notch signalling in the paraxial mesoderm is most sensitive to reduced Pofut1* levels during early mouse development** Karin Schuster-Gossler, Belinda Harris, Kenneth R Johnson, Jürgen Serth, Achim Gossler BMC Developmental Biology 2009, 9:6 (22 January 2009) Abstract \| Full text \| PDF \| PubMed
	40.	Research n3 and n6 polyunsaturated fatty acids differentially modulate prostaglandin E secretion but not markers of lipogenesis in adipocytes Patrick Wortman, Yuko Miyazaki, Nishan S Kalupahana, Suyeon Kim, Melissa Hansen-Petrik, Arnold M Saxton, Kate J Claycombe, Brynn H Voy, Jay Whelan, Naima Moustaid-Moussa Nutrition & Metabolism 2009, 6:5 (21 January 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	41.	Research article Cell adhesion to agrin presented as a nanopatterned substrate is consistent with an interaction with the extracellular matrix and not transmembrane adhesion molecules Tobias Wolfram, Joachim P Spatz, Robert W Burgess BMC Cell Biology 2008, 9:64 (4 December 2008) Abstract \| Full text \| PDF \| PubMed
	42.	Research article *Evidence for Hox-specified positional identities in adult vasculature* Nathanael D Pruett, Richard P Visconti, Donna F Jacobs, Dimitri Scholz, Tim McQuinn, John P Sundberg, Alexander Awgulewitsch BMC Developmental Biology 2008, 8:93 (30 September 2008) Abstract \| Full text \| PDF \| PubMed
	43.	Research Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers Kamila Naxerova, Carol J Bult, Anne Peaston, Karen Fancher, Barbara B Knowles, Simon Kasif, Isaac S Kohane Genome Biology 2008, 9:R108 (8 July 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A systematic analysis of the relationship between the neoplastic and developmental transcriptome provides an outline of global trends in cancer gene expression.
	44.	Proceedings Gene Ontology annotations: what they mean and where they come from David P Hill, Barry Smith, Monica S McAndrews-Hill, Judith A Blake BMC Bioinformatics 2008, 9(Suppl 5):S2 (29 April 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	45.	Research article Gpnmb^R150Xallele must be present in bone marrow derived cells to mediate DBA/2J glaucoma Michael G Anderson, K Saidas Nair, Leslie A Amonoo, Adrienne Mehalow, Colleen M Trantow, Sharmila Masli, Simon WM John BMC Genetics 2008, 9:30 (10 April 2008) Abstract \| Full text \| PDF \| PubMed
	46.	Database A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information Michelle N Knowlton, Tongbin Li, Yongliang Ren, Brent R Bill, Lynda BM Ellis, Stephen C Ekker BMC Bioinformatics 2008, 9:7 (7 January 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	47.	Research article *Inducible nitric oxide synthase, Nos2, does not mediate optic neuropathy and retinopathy in the DBA/2J glaucoma model* Richard T Libby, Gareth R Howell, Iok-Hou Pang, Olga V Savinova, Adrienne K Mehalow, Joseph W Barter, Richard S Smith, Abbot F Clark, Simon WM John BMC Neuroscience 2007, 8:108 (19 December 2007) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Although nitric oxide synthase 2 (NOS2) is implicated in retinal ganglion cell degeneration in one experimental rat glaucoma model, pharmacologically or genetically decreased NOS2 activity does not impact on glaucomatous neurodegeneration in an inherited mouse model.
	48.	Primary research Gene expression profiling of leukemic cells and primary thymocytes predicts a signature for apoptotic sensitivity to glucocorticoids Aaron L Miller, Spogmai Komak, M Scott Webb, Edward H Leiter, E Brad Thompson Cancer Cell International 2007, 7:18 (28 November 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	49.	Proceedings Framework for a Protein Ontology Darren A Natale, Cecilia N Arighi, Winona C Barker, Judith Blake, Ti-Cheng Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith, Cathy H Wu BMC Bioinformatics 2007, 8(Suppl 9):S1 (27 November 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology
	50.	Research article Loss of spermatogonia and wide-spread DNA methylation defects in newborn male mice deficient in DNMT3L Sophie La Salle, Christopher C Oakes, Oana R Neaga, Déborah Bourc'his, Timothy H Bestor, Jacquetta M Trasler BMC Developmental Biology 2007, 7:104 (18 September 2007) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The DNA methyltransferase 3-like methylation regulator, DNMT3L, is more extensively implicated in methylation during mouse gametogenesis than previously thought and is not restricted just to specific genes, such as those showing imprinting.