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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at The Jackson Laboratory

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1.

Research   Open Access

Brain involvement in Alström syndrome

Valentina Citton, Angela Favaro, Vera Bettini, Joseph Gabrieli, Gabriella Milan, Nella Augusta Greggio, Jan D Marshall, Jürgen K Naggert, Renzo Manara, Pietro Maffei Orphanet Journal of Rare Diseases 2013, 8:24 (13 February 2013)

Abstract | Full text | PDF | PubMed

2.

Research article   Open Access

Notch2 is required in somatic cells for breakdown of ovarian germ-cell nests and formation of primordial follicles

Jingxia Xu, Thomas Gridley BMC Biology 2013, 11:13 (13 February 2013)

Abstract | Provisional PDF | PubMed

3.

Research article   Open Access

Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains

Michael J Parsons, Christina Grimm, Jose L Paya-Cano, Cathy Fernandes, Lin Liu, Vivek M Philip, Elissa J Chesler, Wilfried Nietfeld, Hans Lehrach, Leonard C Schalkwyk BMC Genomics 2012, 13:476 (13 September 2012)

Abstract | Full text | PDF | PubMed

4.

Research   Open Access

Sequencing and characterization of the FVB/NJ mouse genome

Kim Wong, Suzannah Bumpstead, Louise Van Der Weyden, Laura G Reinholdt, Laurens G Wilming, David J Adams, Thomas M Keane Genome Biology 2012, 13:R72 (23 August 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The genome of the FVB/NJ mouse is sequenced, revealing variants specific to this strain

5.

Research article   Open Access

Concept annotation in the CRAFT corpus

Michael Bada, Miriam Eckert, Donald Evans, Kristin Garcia, Krista Shipley, Dmitry Sitnikov, William A Baumgartner, K Cohen, Karin Verspoor, Judith A Blake, Lawrence E Hunter BMC Bioinformatics 2012, 13:161 (9 July 2012)

Abstract | Full text | PDF | PubMed

6.

Proceedings   Open Access

A systematic comparison of genome-scale clustering algorithms

Jeremy J Jay, John D Eblen, Yun Zhang, Mikael Benson, Andy D Perkins, Arnold M Saxton, Brynn H Voy, Elissa J Chesler, Michael A Langston BMC Bioinformatics 2012, 13(Suppl 10):S7 (25 June 2012)

Abstract | Full text | PDF | PubMed

7.

Research   Open Access

The genomic landscape shaped by selection on transposable elements across 18 mouse strains

Christoffer Nellåker, Thomas M Keane, Binnaz Yalcin, Kim Wong, Avigail Agam, T Grant Belgard, Jonathan Flint, David J Adams, Wayne N Frankel, Chris P Ponting Genome Biology 2012, 13:R45 (15 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A comprehensive catalog of transposable elements across 18 mouse strains, and a subsequent analysis of selection acting on these transposable elements

8.

Methodology article   Open Access

Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias

John P Didion, Hyuna Yang, Keith Sheppard, Chen-Ping Fu, Leonard McMillan, Fernando de Villena, Gary A Churchill BMC Genomics 2012, 13:34 (19 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

9.

Software   Open Access Highly Accessed

Improving ontologies by automatic reasoning and evaluation of logical definitions

Sebastian Köhler, Sebastian Bauer, Chris J Mungall, Gabriele Carletti, Cynthia L Smith, Paul Schofield, Georgios V Gkoutos, Peter N Robinson BMC Bioinformatics 2011, 12:418 (27 October 2011)

Abstract | Full text | PDF | PubMed

10.

Research   Open Access

BioCreative III interactive task: an overview

Cecilia N Arighi, Phoebe M Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E Thomas, Luca Toldo, Lynette Hirschman, Cathy H Wu BMC Bioinformatics 2011, 12(Suppl 8):S4 (3 October 2011)

Abstract | Full text | PDF | PubMed

11.

Database   Open Access Highly Accessed

The representation of protein complexes in the Protein Ontology (PRO)

Carol J Bult, Harold J Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D'Eustachio, Barry Smith, Judith A Blake, Cathy Wu BMC Bioinformatics 2011, 12:371 (19 September 2011)

Abstract | Full text | PDF | PubMed |  Editor’s summary

ProComp is a component of the Protein Ontology (PRO) database for implementing a logical and consistent representation of protein complexes, and facilitates robust annotation of variations in composition and function contexts within and between species

12.

Method   Open Access Highly Accessed

Mutation discovery in mice by whole exome sequencing

Heather Fairfield, Griffith J Gilbert, Mary Barter, Rebecca R Corrigan, Michelle Curtain, Yueming Ding, Mark D'Ascenzo, Daniel J Gerhardt, Chao He, Wenhui Huang, Todd Richmond, Lucy Rowe, Frank J Probst, David E Bergstrom, Stephen A Murray, Carol Bult, Joel Richardson, Benjamin T Kile, Ivo Gut, Jorg Hager, Snaevar Sigurdsson, Evan Mauceli, Federica Di Palma, Kerstin Lindblad-Toh, Michael L Cunningham, Timothy C Cox, Monica J Justice, Mona S Spector, Scott W Lowe, Thomas Albert, Leah Donahue, Jeffrey Jeddeloh, Jay Shendure, Laura G Reinholdt et al. Genome Biology 2011, 12:R86 (14 September 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

In solution capture reagents are developed for the mouse exome and demonstrated in multiple inbred strains and novel mutant strains

13.

Database   Open Access

Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data

Gareth R Howell, David O Walton, Benjamin L King, Richard T Libby, Simon WM John BMC Genomics 2011, 12:429 (24 August 2011)

Abstract | Full text | PDF | PubMed

14.

Case report   Open Access

Bardet-Biedl syndrome with end-stage kidney disease in a four-year-old Romanian boy: a case report

Cristina M Mihai, Jan D Marshall, Ramona M Stoicescu Journal of Medical Case Reports 2011, 5:378 (15 August 2011)

Abstract | Full text | PDF | PubMed

15.

Research article   Open Access

Stochastic variation of transcript abundance in C57BL/6J mice

Peter T Vedell, Karen L Svenson, Gary A Churchill BMC Genomics 2011, 12:167 (30 March 2011)

Abstract | Full text | PDF | PubMed

16.

Methodology article   Open Access Highly Accessed

Logical Development of the Cell Ontology

Terrence F Meehan, Anna Masci, Amina Abdulla, Lindsay G Cowell, Judith A Blake, Christopher J Mungall, Alexander D Diehl BMC Bioinformatics 2011, 12:6 (5 January 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

17.

Review   Free

Prevention of Alzheimer's disease in high risk groups: statin therapy in subjects with PSEN1 mutations or heterozygosity for apolipoprotein E epsilon 4

Daniel A Pollen, Stephen Baker, Douglas Hinerfeld, Joan Swearer, Barbara A Evans, James E Evans, Richard Caselli, Ekaterina Rogaeva, Peter St George-Hyslop, Majaz Moonis Alzheimer's Research & Therapy 2010, 2:31 (29 October 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Long-term statin therapy may reduce the risk of Alzheimer’s disease in high-risk, presymptomatic subjects, but further studies are necessary to evaluate this prophylactic effect in larger and longer-term trials.

18.

Research article   Open Access Highly Accessed

ARTEMIS stabilizes the genome and modulates proliferative responses in multipotent mesenchymal cells

Sarah A Maas, Nina M Donghia, Kathleen Tompkins, Oded Foreman, Kevin D Mills BMC Biology 2010, 8:132 (27 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

19.

Short Report   Open Access

Distinct expression patterns of mitochondrially localized YFP in neuronal subsets in the retina of three transgenic mouse lines

Robert W Burgess, Peter G Fuerst BMC Research Notes 2010, 3:253 (6 October 2010)

Abstract | Full text | PDF | PubMed

20.

Short Report   Open Access

Expression of the transcription factor, TFII-I, during post-implantation mouse embryonic development

Iwona Fijalkowska, Deva Sharma, Carol J Bult, Sonye K Danoff BMC Research Notes 2010, 3:203 (20 July 2010)

Abstract | Full text | PDF | PubMed

21.

Research article   Open Access

An allele separating skeletal patterning and spermatogonial renewal functions of PLZF

Yung-Hao Ching, Lawriston A Wilson, John C Schimenti BMC Developmental Biology 2010, 10:33 (25 March 2010)

Abstract | Full text | PDF | PubMed | 1 comment

22.

Research article   Open Access Highly Accessed

Pluripotency-associated genes in human nasopharyngeal carcinoma CNE-2 cells are reactivated by a unique epigenetic sub-microenvironment

Jun-Xia Cao, Yu-Xin Cui, Zi-Jie Long, Zhong-Min Dai, Ji-Yan Lin, Yi Liang, Fei-Meng Zheng, Yi-Xin Zeng, Quentin Liu BMC Cancer 2010, 10:68 (25 February 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

23.

Method   Open Access Highly Accessed

Integrating phenotype ontologies across multiple species

Christopher J Mungall, Georgios V Gkoutos, Cynthia L Smith, Melissa A Haendel, Suzanna E Lewis, Michael Ashburner Genome Biology 2010, 11:R2 (8 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A phenotypic ontology that can be used for the analysis of phenotype-genotype data across multiple species, paving the way for truly cross species translational research.

24.

Research article   Open Access

An experimental assessment of in silico haplotype association mapping in laboratory mice

Sarah L Burgess-Herbert, Shirng-Wern Tsaih, Ioannis M Stylianou, Kenneth Walsh, Allison J Cox, Beverly Paigen BMC Genetics 2009, 10:81 (9 December 2009)

Abstract | Full text | PDF | PubMed

25.

Short Report   Open Access

Comparison of threshold selection methods for microarray gene co-expression matrices

Bhavesh R Borate, Elissa J Chesler, Michael A Langston, Arnold M Saxton, Brynn H Voy BMC Research Notes 2009, 2:240 (2 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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