1.
The role of mouse strain differences in the susceptibility to fibrosis: a systematic review
Louise
Walkin,
Sarah
E
Herrick,
Angela
Summers,
Paul
E
Brenchley,
Catherine
M
Hoff,
Ron
Korstanje,
Peter
J
Margetts
Fibrogenesis & Tissue Repair 2013, 6 :18 (25 September 2013)
Abstract | Full text | PDF
2.
Proprotein convertases in high-density lipoprotein metabolism
Seungbum
Choi,
Ron
Korstanje
Biomarker Research 2013, 1 :27 (18 September 2013)
Abstract | Full text | PDF
3.
The mouse pathology ontology, MPATH; structure and applications
Paul
N
Schofield,
John
P
Sundberg,
Beth
A
Sundberg,
Colin
McKerlie,
Georgios
V
Gkoutos
Journal of Biomedical Semantics 2013, 4 :18 (13 September 2013)
Abstract | Provisional PDF
| PubMed
4.
Glial scaffold required for cerebellar granule cell migration is dependent on dystroglycan function as a receptor for basement membrane proteins
Huy
Nguyen,
Adam
P
Ostendorf,
Jakob
S
Satz,
Steve
Westra,
Susan
E
Ross-Barta,
Kevin
P
Campbell,
Steven
A
Moore
Acta Neuropathologica Communications 2013, 1 :58 (6 September 2013)
Abstract | Full text | PDF
5.
Ontology based molecular signatures for immune cell types via gene expression analysis
Terrence
F
Meehan,
Nicole
A
Vasilevsky,
Christopher
J
Mungall,
David
S
Dougall,
Melissa
A
Haendel,
Judith
A
Blake,
Alexander
D
Diehl
BMC Bioinformatics 2013, 14 :263 (30 August 2013)
Abstract | Full text | PDF | PubMed
6.
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update
Terry
F
Hayamizu,
Michael
N
Wicks,
Duncan
R
Davidson,
Albert
Burger,
Martin
Ringwald,
Richard
A
Baldock
Journal of Biomedical Semantics 2013, 4 :15 (26 August 2013)
Abstract | Provisional PDF
| PubMed
7.
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species
Carissa
A
Park,
Susan
M
Bello,
Cynthia
L
Smith,
Zhi-Liang
Hu,
Diane
H
Munzenmaier,
Rajni
Nigam,
Jennifer
R
Smith,
Mary
Shimoyama,
Janan
T
Eppig,
James
M
Reecy
Journal of Biomedical Semantics 2013, 4 :13 (9 August 2013)
Abstract | Provisional PDF
| PubMed
8.
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology
David
P
Hill,
Nico
Adams,
Mike
Bada,
Colin
Batchelor,
Tanya
Z
Berardini,
Heiko
Dietze,
Harold
J
Drabkin,
Marcus
Ennis,
Rebecca
E
Foulger,
Midori
A
Harris,
Janna
Hastings,
Namrata
S
Kale,
Paula
de Matos,
Christopher
J
Mungall,
Gareth
Owen,
Paola
Roncaglia,
Christoph
Steinbeck,
Steve
Turner,
Jane
Lomax
BMC Genomics 2013, 14 :513 (29 July 2013)
Abstract | Full text | PDF | PubMed
9.
Decreased APOE-containing HDL subfractions and cholesterol efflux capacity of serum in mice lacking Pcsk9
Seungbum
Choi,
Aleksandra
Aljakna,
Ujala
Srivastava,
Blake
R
Peterson,
Bin
Deng,
Annik
Prat,
Ron
Korstanje
Lipids in Health and Disease 2013, 12 :112 (24 July 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
10.
Intratumoral localization and activity of 17β -hydroxysteroid dehydrogenase type 1 in non-small cell lung cancer: a potent prognostic factor
Mohit
K
Verma,
Yasuhiro
Miki,
Keiko
Abe,
Takashi
Suzuki,
Hiromichi
Niikawa,
Satoshi
Suzuki,
Takashi
Kondo,
Hironobu
Sasano
Journal of Translational Medicine 2013, 11 :167 (9 July 2013)
Abstract | Full text | PDF | PubMed
11.
Deficiency of complement component 5 ameliorates glaucoma in DBA/2J mice
Gareth
R
Howell,
Ileana
Soto,
Margaret
Ryan,
Leah
C
Graham,
Richard
S
Smith,
Simon
WM
John
Journal of Neuroinflammation 2013, 10 :76 (27 June 2013)
Abstract | Full text | PDF | PubMed
12.
DNA binding specificities of the long zinc-finger recombination protein PRDM9
Timothy
Billings,
Emil
D
Parvanov,
Christopher
L
Baker,
Michael
Walker,
Kenneth
Paigen,
Petko
M
Petkov
Genome Biology 2013, 14 :R35 (24 April 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A detailed analysis of DNA binding by PRDM9, the zinc finger protein that determines recombination hotspots in mammals
13.
Brain involvement in Alström syndrome
Valentina
Citton,
Angela
Favaro,
Vera
Bettini,
Joseph
Gabrieli,
Gabriella
Milan,
Nella Augusta
Greggio,
Jan
D
Marshall,
Jürgen
K
Naggert,
Renzo
Manara,
Pietro
Maffei
Orphanet Journal of Rare Diseases 2013, 8 :24 (13 February 2013)
Abstract | Full text | PDF | PubMed
14.
Notch2 is required in somatic cells for breakdown of ovarian germ-cell nests and formation of primordial follicles
Jingxia
Xu,
Thomas
Gridley
BMC Biology 2013, 11 :13 (13 February 2013)
Abstract | Full text | PDF | PubMed
15.
Effect of the myostatin locus on muscle mass and intramuscular fat content in a cross between mouse lines selected for hypermuscularity
Stefan
Kärst,
Eva
M
Strucken,
Armin
O
Schmitt,
Alexandra
Weyrich,
Fernando
PM
de Villena,
Hyuna
Yang,
Gudrun
A
Brockmann
BMC Genomics 2013, 14 :16 (16 January 2013)
Abstract | Full text | PDF | PubMed
16.
ISA-TAB-Nano: A Specification for Sharing Nanomaterial Research Data in Spreadsheet-based Format
Dennis
G
Thomas,
Sharon
Gaheen,
Stacey
L
Harper,
Martin
Fritts,
Fred
Klaessig,
Elizabeth
Hahn-Dantona,
David
Paik,
Sue
Pan,
Grace
A
Stafford,
Elaine
T
Freund,
Juli
D
Klemm,
Nathan
A
Baker
BMC Biotechnology 2013, 13 :2 (14 January 2013)
Abstract | Full text | PDF | PubMed
17.
Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains
Michael
J
Parsons,
Christina
Grimm,
Jose
L
Paya-Cano,
Cathy
Fernandes,
Lin
Liu,
Vivek
M
Philip,
Elissa
J
Chesler,
Wilfried
Nietfeld,
Hans
Lehrach,
Leonard
C
Schalkwyk
BMC Genomics 2012, 13 :476 (13 September 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
18.
Sequencing and characterization of the FVB/NJ mouse genome
Kim
Wong,
Suzannah
Bumpstead,
Louise
Van Der Weyden,
Laura
G
Reinholdt,
Laurens
G
Wilming,
David
J
Adams,
Thomas
M
Keane
Genome Biology 2012, 13 :R72 (23 August 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
The genome of the FVB/NJ mouse is sequenced, revealing variants specific to this strain
19.
Concept annotation in the CRAFT corpus
Michael
Bada,
Miriam
Eckert,
Donald
Evans,
Kristin
Garcia,
Krista
Shipley,
Dmitry
Sitnikov,
William
A
Baumgartner,
K
Cohen,
Karin
Verspoor,
Judith
A
Blake,
Lawrence
E
Hunter
BMC Bioinformatics 2012, 13 :161 (9 July 2012)
Abstract | Full text | PDF | PubMed
20.
A systematic comparison of genome-scale clustering algorithms
Jeremy
J
Jay,
John
D
Eblen,
Yun
Zhang,
Mikael
Benson,
Andy
D
Perkins,
Arnold
M
Saxton,
Brynn
H
Voy,
Elissa
J
Chesler,
Michael
A
Langston
BMC Bioinformatics 2012, 13 (Suppl 10):S7 (25 June 2012)
Abstract | Full text | PDF | PubMed
21.
The genomic landscape shaped by selection on transposable elements across 18 mouse strains
Christoffer
Nellåker,
Thomas
M
Keane,
Binnaz
Yalcin,
Kim
Wong,
Avigail
Agam,
T Grant
Belgard,
Jonathan
Flint,
David
J
Adams,
Wayne
N
Frankel,
Chris
P
Ponting
Genome Biology 2012, 13 :R45 (15 June 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
A comprehensive catalog of transposable elements across 18 mouse strains, and a subsequent analysis of selection acting on these transposable elements
22.
Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
John
P
Didion,
Hyuna
Yang,
Keith
Sheppard,
Chen-Ping
Fu,
Leonard
McMillan,
Fernando
de Villena,
Gary
A
Churchill
BMC Genomics 2012, 13 :34 (19 January 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
23.
Improving ontologies by automatic reasoning and evaluation of logical definitions
Sebastian
Köhler,
Sebastian
Bauer,
Chris
J
Mungall,
Gabriele
Carletti,
Cynthia
L
Smith,
Paul
Schofield,
Georgios
V
Gkoutos,
Peter
N
Robinson
BMC Bioinformatics 2011, 12 :418 (27 October 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
24.
BioCreative III interactive task: an overview
Cecilia
N
Arighi,
Phoebe
M
Roberts,
Shashank
Agarwal,
Sanmitra
Bhattacharya,
Gianni
Cesareni,
Andrew
Chatr-aryamontri,
Simon
Clematide,
Pascale
Gaudet,
Michelle
Giglio,
Ian
Harrow,
Eva
Huala,
Martin
Krallinger,
Ulf
Leser,
Donghui
Li,
Feifan
Liu,
Zhiyong
Lu,
Lois
J
Maltais,
Naoaki
Okazaki,
Livia
Perfetto,
Fabio
Rinaldi,
Rune
Sætre,
David
Salgado,
Padmini
Srinivasan,
Philippe
E
Thomas,
Luca
Toldo,
Lynette
Hirschman,
Cathy
H
Wu
BMC Bioinformatics 2011, 12 (Suppl 8):S4 (3 October 2011)
Abstract | Full text | PDF | PubMed
25.
The representation of protein complexes in the Protein Ontology (PRO)
Carol
J
Bult,
Harold
J
Drabkin,
Alexei
Evsikov,
Darren
Natale,
Cecilia
Arighi,
Natalia
Roberts,
Alan
Ruttenberg,
Peter
D'Eustachio,
Barry
Smith,
Judith
A
Blake,
Cathy
Wu
BMC Bioinformatics 2011, 12 :371 (19 September 2011)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
ProComp is a component of the Protein Ontology (PRO) database for implementing a logical and consistent representation of protein complexes, and facilitates robust annotation of variations in composition and function contexts within and between species