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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at The Jackson Laboratory

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	1.	Research Brain involvement in Alström syndrome Valentina Citton, Angela Favaro, Vera Bettini, Joseph Gabrieli, Gabriella Milan, Nella Augusta Greggio, Jan D Marshall, Jürgen K Naggert, Renzo Manara, Pietro Maffei Orphanet Journal of Rare Diseases 2013, 8:24 (13 February 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Research article Notch2 is required in somatic cells for breakdown of ovarian germ-cell nests and formation of primordial follicles Jingxia Xu, Thomas Gridley BMC Biology 2013, 11:13 (13 February 2013) Abstract \| Provisional PDF \| PubMed
	3.	Research article Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains Michael J Parsons, Christina Grimm, Jose L Paya-Cano, Cathy Fernandes, Lin Liu, Vivek M Philip, Elissa J Chesler, Wilfried Nietfeld, Hans Lehrach, Leonard C Schalkwyk BMC Genomics 2012, 13:476 (13 September 2012) Abstract \| Full text \| PDF \| PubMed
	4.	Research Sequencing and characterization of the FVB/NJ mouse genome Kim Wong, Suzannah Bumpstead, Louise Van Der Weyden, Laura G Reinholdt, Laurens G Wilming, David J Adams, Thomas M Keane Genome Biology 2012, 13:R72 (23 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The genome of the FVB/NJ mouse is sequenced, revealing variants specific to this strain
	5.	Research article Concept annotation in the CRAFT corpus Michael Bada, Miriam Eckert, Donald Evans, Kristin Garcia, Krista Shipley, Dmitry Sitnikov, William A Baumgartner, K Cohen, Karin Verspoor, Judith A Blake, Lawrence E Hunter BMC Bioinformatics 2012, 13:161 (9 July 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Proceedings A systematic comparison of genome-scale clustering algorithms Jeremy J Jay, John D Eblen, Yun Zhang, Mikael Benson, Andy D Perkins, Arnold M Saxton, Brynn H Voy, Elissa J Chesler, Michael A Langston BMC Bioinformatics 2012, 13(Suppl 10):S7 (25 June 2012) Abstract \| Full text \| PDF \| PubMed
	7.	Research The genomic landscape shaped by selection on transposable elements across 18 mouse strains Christoffer Nellåker, Thomas M Keane, Binnaz Yalcin, Kim Wong, Avigail Agam, T Grant Belgard, Jonathan Flint, David J Adams, Wayne N Frankel, Chris P Ponting Genome Biology 2012, 13:R45 (15 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A comprehensive catalog of transposable elements across 18 mouse strains, and a subsequent analysis of selection acting on these transposable elements
	8.	Methodology article Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias John P Didion, Hyuna Yang, Keith Sheppard, Chen-Ping Fu, Leonard McMillan, Fernando de Villena, Gary A Churchill BMC Genomics 2012, 13:34 (19 January 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	9.	Software Improving ontologies by automatic reasoning and evaluation of logical definitions Sebastian Köhler, Sebastian Bauer, Chris J Mungall, Gabriele Carletti, Cynthia L Smith, Paul Schofield, Georgios V Gkoutos, Peter N Robinson BMC Bioinformatics 2011, 12:418 (27 October 2011) Abstract \| Full text \| PDF \| PubMed
	10.	Research BioCreative III interactive task: an overview Cecilia N Arighi, Phoebe M Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E Thomas, Luca Toldo, Lynette Hirschman, Cathy H Wu BMC Bioinformatics 2011, 12(Suppl 8):S4 (3 October 2011) Abstract \| Full text \| PDF \| PubMed
	11.	Database The representation of protein complexes in the Protein Ontology (PRO) Carol J Bult, Harold J Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D'Eustachio, Barry Smith, Judith A Blake, Cathy Wu BMC Bioinformatics 2011, 12:371 (19 September 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary ProComp is a component of the Protein Ontology (PRO) database for implementing a logical and consistent representation of protein complexes, and facilitates robust annotation of variations in composition and function contexts within and between species
	12.	Method Mutation discovery in mice by whole exome sequencing Heather Fairfield, Griffith J Gilbert, Mary Barter, Rebecca R Corrigan, Michelle Curtain, Yueming Ding, Mark D'Ascenzo, Daniel J Gerhardt, Chao He, Wenhui Huang, Todd Richmond, Lucy Rowe, Frank J Probst, David E Bergstrom, Stephen A Murray, Carol Bult, Joel Richardson, Benjamin T Kile, Ivo Gut, Jorg Hager, Snaevar Sigurdsson, Evan Mauceli, Federica Di Palma, Kerstin Lindblad-Toh, Michael L Cunningham, Timothy C Cox, Monica J Justice, Mona S Spector, Scott W Lowe, Thomas Albert, Leah Donahue, Jeffrey Jeddeloh, Jay Shendure, Laura G Reinholdt et al. Genome Biology 2011, 12:R86 (14 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology \| Editor’s summary In solution capture reagents are developed for the mouse exome and demonstrated in multiple inbred strains and novel mutant strains
	13.	Database Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data Gareth R Howell, David O Walton, Benjamin L King, Richard T Libby, Simon WM John BMC Genomics 2011, 12:429 (24 August 2011) Abstract \| Full text \| PDF \| PubMed
	14.	Case report Bardet-Biedl syndrome with end-stage kidney disease in a four-year-old Romanian boy: a case report Cristina M Mihai, Jan D Marshall, Ramona M Stoicescu Journal of Medical Case Reports 2011, 5:378 (15 August 2011) Abstract \| Full text \| PDF \| PubMed
	15.	Research article Stochastic variation of transcript abundance in C57BL/6J mice Peter T Vedell, Karen L Svenson, Gary A Churchill BMC Genomics 2011, 12:167 (30 March 2011) Abstract \| Full text \| PDF \| PubMed
	16.	Methodology article Logical Development of the Cell Ontology Terrence F Meehan, Anna Masci, Amina Abdulla, Lindsay G Cowell, Judith A Blake, Christopher J Mungall, Alexander D Diehl BMC Bioinformatics 2011, 12:6 (5 January 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	17.	Review *Prevention of Alzheimer's disease in high risk groups: statin therapy in subjects with PSEN1* mutations or heterozygosity for apolipoprotein E epsilon 4** Daniel A Pollen, Stephen Baker, Douglas Hinerfeld, Joan Swearer, Barbara A Evans, James E Evans, Richard Caselli, Ekaterina Rogaeva, Peter St George-Hyslop, Majaz Moonis Alzheimer's Research & Therapy 2010, 2:31 (29 October 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Long-term statin therapy may reduce the risk of Alzheimer’s disease in high-risk, presymptomatic subjects, but further studies are necessary to evaluate this prophylactic effect in larger and longer-term trials.
	18.	Research article ARTEMIS stabilizes the genome and modulates proliferative responses in multipotent mesenchymal cells Sarah A Maas, Nina M Donghia, Kathleen Tompkins, Oded Foreman, Kevin D Mills BMC Biology 2010, 8:132 (27 October 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	19.	Short Report Distinct expression patterns of mitochondrially localized YFP in neuronal subsets in the retina of three transgenic mouse lines Robert W Burgess, Peter G Fuerst BMC Research Notes 2010, 3:253 (6 October 2010) Abstract \| Full text \| PDF \| PubMed
	20.	Short Report Expression of the transcription factor, TFII-I, during post-implantation mouse embryonic development Iwona Fijalkowska, Deva Sharma, Carol J Bult, Sonye K Danoff BMC Research Notes 2010, 3:203 (20 July 2010) Abstract \| Full text \| PDF \| PubMed
	21.	Research article An allele separating skeletal patterning and spermatogonial renewal functions of PLZF Yung-Hao Ching, Lawriston A Wilson, John C Schimenti BMC Developmental Biology 2010, 10:33 (25 March 2010) Abstract \| Full text \| PDF \| PubMed \| 1 comment
	22.	Research article Pluripotency-associated genes in human nasopharyngeal carcinoma CNE-2 cells are reactivated by a unique epigenetic sub-microenvironment Jun-Xia Cao, Yu-Xin Cui, Zi-Jie Long, Zhong-Min Dai, Ji-Yan Lin, Yi Liang, Fei-Meng Zheng, Yi-Xin Zeng, Quentin Liu BMC Cancer 2010, 10:68 (25 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	23.	Method Integrating phenotype ontologies across multiple species Christopher J Mungall, Georgios V Gkoutos, Cynthia L Smith, Melissa A Haendel, Suzanna E Lewis, Michael Ashburner Genome Biology 2010, 11:R2 (8 January 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A phenotypic ontology that can be used for the analysis of phenotype-genotype data across multiple species, paving the way for truly cross species translational research.
	24.	Research article *An experimental assessment of in silico* haplotype association mapping in laboratory mice** Sarah L Burgess-Herbert, Shirng-Wern Tsaih, Ioannis M Stylianou, Kenneth Walsh, Allison J Cox, Beverly Paigen BMC Genetics 2009, 10:81 (9 December 2009) Abstract \| Full text \| PDF \| PubMed
	25.	Short Report Comparison of threshold selection methods for microarray gene co-expression matrices Bhavesh R Borate, Elissa J Chesler, Michael A Langston, Arnold M Saxton, Brynn H Voy BMC Research Notes 2009, 2:240 (2 December 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central