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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of St Andrews

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1.

Research article   Open Access

Diversity is maintained by seasonal variation in species abundance

Hideyasu Shimadzu, Maria Dornelas, Peter A Henderson, Anne E Magurran BMC Biology 2013, 11:98 (4 September 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A fish population dataset collected over 30 years shows a connection between seasonal resource abundance and the maintenance of species diversity.

2.

Research article   Open Access

Optimisation of the foot-and-mouth disease virus 2A co-expression system for biomedical applications

Ekaterina Minskaia, John Nicholson, Martin D Ryan BMC Biotechnology 2013, 13:67 (22 August 2013)

Abstract | Full text | PDF | PubMed

3.

Software   Open Access Highly Accessed

4273π: Bioinformatics education on low cost ARM hardware

Daniel Barker, David EK Ferrier, Peter WH Holland, John BO Mitchell, Heleen Plaisier, Michael G Ritchie, Steven D Smart BMC Bioinformatics 2013, 14:243 (12 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

An open access, open learning method for teaching bioinformatics uses the Raspberry Pi computer and a custom operating system to teach early-career researchers key skills in systems administration and computational biology at low cost.

4.

Research article   Open Access Highly Accessed

PFClust: a novel parameter free clustering algorithm

Lazaros Mavridis, Neetika Nath, John BO Mitchell BMC Bioinformatics 2013, 14:213 (3 July 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

5.

Research article   Open Access Highly Accessed

Predicting the protein targets for athletic performance-enhancing substances

Lazaros Mavridis, John BO Mitchell Journal of Cheminformatics 2013, 5:31 (25 June 2013)

Abstract | Full text | PDF | PubMed | Graphical abstract

6.

Research article   Open Access

UK population norms for the modified dental anxiety scale with percentile calculator: adult dental health survey 2009 results

Gerry Humphris, John R Crawford, Kirsty Hill, Angela Gilbert, Ruth Freeman BMC Oral Health 2013, 13:29 (24 June 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The extent of dental fear in the UK population has been assessed by a nationwide survey, providing a resource for practitioners to estimate the rarity of their own patients’ level of fear in comparison to major demographic groups

7.

Research article   Open Access Highly Accessed

Fitness consequences of female multiple mating: A direct test of indirect benefits

Miguel Barbosa, Sean R Connolly, Mizue Hisano, Maria Dornelas, Anne E Magurran BMC Evolutionary Biology 2012, 12:185 (15 September 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Multiple mating by female guppies has the direct advantage of increasing numbers of offspring, suggesting it does not result from indirect benefits felt in later generations or from sexual coercion by males.

8.

Research article   Open Access Highly Accessed

Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing

Daniel Garcia de la serrana, Alicia Estévez, Karl Andree, Ian A Johnston BMC Genomics 2012, 13:181 (11 May 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

9.

Research article   Open Access Highly Accessed

Is EC class predictable from reaction mechanism?

Neetika Nath, John BO Mitchell BMC Bioinformatics 2012, 13:60 (24 April 2012)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access

Family structure and breakfast consumption of 11-15 year old boys and girls in Scotland, 1994-2010: a repeated cross-sectional study

Kate A Levin, Joanna Kirby, Candace Currie BMC Public Health 2012, 12:228 (22 March 2012)

Abstract | Full text | PDF | PubMed

11.

Research article   Open Access Highly Accessed

Predicting the mechanism of phospholipidosis

Robert Lowe, Hamse Y Mussa, Florian Nigsch, Robert C Glen, John BO Mitchell Journal of Cheminformatics 2012, 4:2 (26 January 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary | Graphical abstract

An in silico approach was used to predict targets for phospholipidosis, a lysosomal disorder characterized by accumulation of phospholipids in tissues. By predicting targets for a database of compounds, they can be ranked by their potential to cause phospholipidosis

12.

Research article   Open Access

Annelid Distal-less/Dlx duplications reveal varied post-duplication fates

Carmel McDougall, Natalia Korchagina, Jonathan L Tobin, David EK Ferrier BMC Evolutionary Biology 2011, 11:241 (16 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

13.

Research article   Open Access Highly Accessed

Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus

Ian M Overton, Shirley Graham, Katherine A Gould, Jason Hinds, Catherine H Botting, Sally Shirran, Geoffrey J Barton, Peter J Coote BMC Systems Biology 2011, 5:68 (12 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

14.

Research article   Open Access Highly Accessed

Repeated elicitation of the acoustic startle reflex leads to sensitisation in subsequent avoidance behaviour and induces fear conditioning

Thomas Götz, Vincent M Janik BMC Neuroscience 2011, 12:30 (13 April 2011)

Abstract | Full text | PDF | PubMed

15.

Research article   Open Access

Impact of biodiversity-climate futures on primary production and metabolism in a model benthic estuarine system

Natalie Hicks, Mark T Bulling, Martin Solan, Dave Raffaelli, Piran CL White, David M Paterson BMC Ecology 2011, 11:7 (14 February 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

16.

Research article   Open Access Highly Accessed

The modified dental anxiety scale: UK general public population norms in 2008 with further psychometrics and effects of age

Gerry M Humphris, Tom A Dyer, Peter G Robinson BMC Oral Health 2009, 9:20 (26 August 2009)

Abstract | Full text | PDF | PubMed

17.

Research   Open Access

Phasing of muscle gene expression with fasting-induced recovery growth in Atlantic salmon

Neil I Bower, Richard G Taylor, Ian A Johnston Frontiers in Zoology 2009, 6:18 (24 August 2009)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access

Selection of reference genes for expression studies with fish myogenic cell cultures

Neil I Bower, Ian A Johnston BMC Molecular Biology 2009, 10:80 (10 August 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

19.

Research article   Open Access Highly Accessed

Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes

Jerome HL Hui, Florian Raible, Natalia Korchagina, Nicolas Dray, Sylvie Samain, Ghislaine Magdelenat, Claire Jubin, Béatrice Segurens, Guillaume Balavoine, Detlev Arendt, David EK Ferrier BMC Biology 2009, 7:43 (23 July 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

ParaHox genes in the ragworm, Platynereis, show a complexity of expression and a clustered arrangement not seen in other protostomes, supporting a reconstruction of the Parahox cluster in the extinct protostome-deuterostome ancestor.

20.

Research article   Open Access Highly Accessed

Micro-expression recognition training in medical students: a pilot study

Jennifer Endres, Anita Laidlaw BMC Medical Education 2009, 9:47 (20 July 2009)

Abstract | Full text | PDF | PubMed

21.

Research article   Open Access

Graduate attributes in the disciplines of Medicine, Dentistry and Veterinary Medicine: a survey of expert opinions

Anita Laidlaw, Simon Guild, Julie Struthers BMC Medical Education 2009, 9:28 (5 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

22.

Research article   Open Access Highly Accessed

Evolution of the multifaceted eukaryotic akirin gene family

Daniel J Macqueen, Ian A Johnston BMC Evolutionary Biology 2009, 9:34 (6 February 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

23.

Methodology article   Open Access Highly Accessed

An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol

Huanting Liu, James H Naismith BMC Biotechnology 2008, 8:91 (4 December 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

24.

Research article   Open Access

Induction of HLA-B27 heavy chain homodimer formation after activation in dendritic cells

Susana G Santos, Sarah Lynch, Elaine C Campbell, Antony N Antoniou, Simon J Powis Arthritis Research & Therapy 2008, 10:R100 (29 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

25.

Research article   Open Access Highly Accessed

Evaluation of the current knowledge limitations in breast cancer research: a gap analysis

Alastair Thompson, Keith Brennan, Angela Cox, Julia Gee, Diana Harcourt, Adrian Harris, Michelle Harvie, Ingunn Holen, Anthony Howell, Robert Nicholson, Michael Steel, Charles Streuli, Breast Cancer Research 2008, 10:R26 (27 March 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A comprehensive review of the seven main research areas by 56 experts has identified the key gaps and priorities for the greatest potential impact on breast cancer patients.

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