51.
Reduced modeling of signal transduction – a modular approach
Markus
Koschorreck,
Holger
Conzelmann,
Sybille
Ebert,
Michael
Ederer,
Ernst
Gilles
BMC Bioinformatics 2007, 8 :336 (13 September 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
A new modeling approach deals with the complexity of signal transduction networks by building modular and highly reduced models that are intuitive and usable wihout complex mathematical tools or knowledge.
52.
Smad4-expression is decreased in breast cancer tissues: a retrospective study
Christina
H
Stuelten,
Miriam
B
Buck,
Juergen
Dippon,
Anita
B
Roberts,
Peter
Fritz,
Cornelius
Knabbe
BMC Cancer 2006, 6 :25 (26 January 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
53.
Membrane insertion and assembly of epitope-tagged gp9 at the tip of the M13 phage
Martin
Ploss,
Andreas
Kuhn
BMC Microbiology 2011, 11 :211 (26 September 2011)
Abstract | Full text | PDF | PubMed
54.
Modeling time delay in the NFκ B signaling pathway following low dose IL-1 stimulation
Johannes
Witt,
Sandra
Barisic,
Oliver
Sawodny,
Michael
Ederer,
Dagmar
Kulms,
Thomas
Sauter
EURASIP Journal on Bioinformatics and Systems Biology 2011, 2011 :3 (17 June 2011)
Abstract | Full text | PDF | PubMed
55.
Model-based analysis of an adaptive evolution experiment with Escherichia coli in a pyruvate limited continuous culture with glycerol
Ronny
Feuer,
Katrin
Gottlieb,
Gero
Viertel,
Johannes
Klotz,
Steffen
Schober,
Martin
Bossert,
Oliver
Sawodny,
Georg
Sprenger,
Michael
Ederer
EURASIP Journal on Bioinformatics and Systems Biology 2012, 2012 :14 (3 October 2012)
Abstract | Full text | PDF | PubMed
56.
Regulation of mtl operon promoter of Bacillus subtilis : requirements of its use in expression vectors
Kambiz
Morabbi Heravi,
Marian
Wenzel,
Josef
Altenbuchner
Microbial Cell Factories 2011, 10 :83 (20 October 2011)
Abstract | Full text | PDF | PubMed
57.
SHV Lactamase Engineering Database: a reconciliation tool for SHV β -lactamases in public databases
Quan
K
Thai,
Juergen
Pleiss
BMC Genomics 2010, 11 :563 (13 October 2010)
Abstract | Full text | PDF | PubMed
58.
Exact model reduction of combinatorial reaction networks
Holger
Conzelmann,
Dirk
Fey,
Ernst
D
Gilles
BMC Systems Biology 2008, 2 :78 (28 August 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
59.
Expression patterns of protein kinase D 3 during mouse development
Kornelia
Ellwanger,
Klaus
Pfizenmaier,
Sylke
Lutz,
Angelika
Hausser
BMC Developmental Biology 2008, 8 :47 (25 April 2008)
Abstract | Full text | PDF | PubMed
60.
Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model
Nadav
S
Bar,
Nicole
Radde
BMC Systems Biology 2009, 3 :107 (10 November 2009)
Abstract | Full text | PDF | PubMed
61.
Shape-persistent macrocycles with intraannular alkyl groups: some structural limits of discotic liquid crystals with an inverted structure
Sigurd
Höger,
Jill
Weber,
Andreas
Leppert,
Volker
Enkelmann
Beilstein Journal of Organic Chemistry 2008, 4 :1 (9 January 2008)
Abstract | Full text | PDF | PubMed
|
Graphical abstract
62.
Analysis of the distribution of functionally relevant rare codons
Michael
Widmann,
Marie
Clairo,
Jürgen
Dippon,
Jürgen
Pleiss
BMC Genomics 2008, 9 :207 (5 May 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
63.
Analyzing fixed points of intracellular regulation networks with interrelated feedback topology
Nicole
Radde
BMC Systems Biology 2012, 6 :57 (6 June 2012)
Abstract | Full text | PDF | PubMed
64.
The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus
Rob
M
de Graaf,
Theo
A
van Alen,
Bas
E
Dutilh,
Jan
WP
Kuiper,
Hanneke
JAA
van Zoggel,
Minh
Huynh,
Hans-Dieter
Görtz,
Martijn
A
Huynen,
Johannes
HP
Hackstein
BMC Genomics 2009, 10 :514 (6 November 2009)
Abstract | Full text | PDF | PubMed
65.
Are different stoichiometries feasible for complexes between lymphotoxin-alpha and tumor necrosis factor receptor 1?
Nahren
Mascarenhas,
Johannes
Kästner
BMC Structural Biology 2012, 12 :8 (8 May 2012)
Abstract | Full text | PDF | PubMed
66.
Mechanism of PP2A-mediated IKKβ dephosphorylation: a systems biological approach
Johannes
Witt,
Sandra
Barisic,
Eva
Schumann,
Frank
Allgöwer,
Oliver
Sawodny,
Thomas
Sauter,
Dagmar
Kulms
BMC Systems Biology 2009, 3 :71 (16 July 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
67.
Modeling of solvent-dependent conformational transitions in Burkholderia cepacia lipase
Peter
Trodler,
Rolf
D
Schmid,
Jürgen
Pleiss
BMC Structural Biology 2009, 9 :38 (28 May 2009)
Abstract | Full text | PDF | PubMed
68.
Review of three Recent Books on the Boundary of Bioinformatics and Systems Biology
Eric
Bullinger,
Monica
Schliemann
BioMedical Engineering OnLine 2010, 9 :33 (14 July 2010)
Abstract | Full text | PDF
69.
iHAT: interactive Hierarchical Aggregation Table for Genetic Association Data
Julian
Heinrich,
Corinna
Vehlow,
Florian
Battke,
Günter
Jäger,
Daniel
Weiskopf,
Kay
Nieselt
BMC Bioinformatics 2012, 13 (Suppl 8):S2 (18 May 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
70.
A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks
Holger
Conzelmann,
Julio
Saez-Rodriguez,
Thomas
Sauter,
Boris
N
Kholodenko,
Ernst
D
Gilles
BMC Bioinformatics 2006, 7 :34 (23 January 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
71.
Attenuation Analysis of Lamb Waves Using the Chirplet Transform
Florian
Kerber,
Helge
Sprenger,
Marc
Niethammer,
Kritsakorn
Luangvilai,
LaurenceJ
Jacobs
EURASIP Journal on Advances in Signal Processing 2010, 2010 :375171 (14 June 2010)
Abstract | Full text | PDF
72.
Correction: Prediction and analysis of the modular structure of cytochrome P450 monooxygenases
Demet
Sirim,
Michael
Widmann,
Florian
Wagner,
Jürgen
Pleiss
BMC Structural Biology 2012, 12 :4 (25 April 2012)
Abstract | Full text | PDF | PubMed
73.
The Lactamase Engineering Database: a critical survey of TEM sequences in public databases
Quan
Thai,
Fabian
Bös,
Jürgen
Pleiss
BMC Genomics 2009, 10 :390 (21 August 2009)
Abstract | Full text | PDF | PubMed
74.
Amplitude distribution of stochastic oscillations in biochemical networks due to intrinsic noise
Moritz
Lang,
Steffen
Waldherr,
Frank
Allgöwer
PMC Biophysics 2009, 2 :10 (17 November 2009)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Intrinsic noise is a common phenomenon in biochemical reaction networks and may affect the occurence and amplitude of sustained oscillations in the states of the network. We present a new method to compute the amplitude distribution of the oscillations without the need for long-term stochastic simulations.