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1.

Technical advance   Open Access

In silico surveillance: evaluating outbreak detection with simulation models

Bryan Lewis, Stephen Eubank, Allyson M Abrams, Ken Kleinman BMC Medical Informatics and Decision Making 2013, 13:12 (23 January 2013)

Abstract | Provisional PDF | PubMed

2.

Research article   Open Access Highly Accessed

Effects of the probiotic Lactobacillus animalis in murine Mycobacterium avium subspecies paratuberculosis infection

Enusha Karunasena, Paresh C Kurkure, Russell D Lackey, Kevin Wyatt McMahon, Estevan P Kiernan, Suzanne Graham, Magdy S Alabady, David L Campos, Owatha L Tatum, Mindy M Brashears BMC Microbiology 2013, 13:8 (16 January 2013)

Abstract | Full text | PDF | PubMed

3.

Meeting report   Subscription

Personal genomes and precision medicine

Gareth Highnam, David Mittelman Genome Biology 2012, 13:324 (19 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A report of the fifth annual Personal Genomes and Medical Genomics meeting, held at Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA, November 14-17, 2012

4.

Research   Open Access

Species-level classification of the vaginal microbiome

Jennifer M Fettweis, Myrna G Serrano, Nihar U Sheth, Carly M Mayer, Abigail L Glascock, J Paul Brooks, Kimberly K Jefferson, Gregory A Buck BMC Genomics 2012, 13(Suppl 8):S17 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

5.

Research   Open Access

A strategy to study pathway cross-talks of cells under repetitive exposure to stimuli

Yan Fu, Xiaoshan Jiang, Hang Zhang, Jianhua Xing BMC Systems Biology 2012, 6(Suppl 3):S6 (17 December 2012)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access Highly Accessed

Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture

Lecong Zhou, Jason A Holliday BMC Genomics 2012, 13:703 (14 December 2012)

Abstract | Full text | PDF | PubMed

7.

Review   Open Access

Dietary biomarkers: advances, limitations and future directions

Valisa E Hedrick, Andrea M Dietrich, Paul A Estabrooks, Jyoti Savla, Elena Serrano, Brenda M Davy Nutrition Journal 2012, 11:109 (14 December 2012)

Abstract | Full text | PDF | PubMed

8.

Review   Open Access

Experimental determination of the oral bioavailability and bioaccessibility of lead particles

Elise Deshommes, Robert Tardif, Marc Edwards, Sébastien Sauvé, Michèle Prévost Chemistry Central Journal 2012, 6:138 (22 November 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This review summarizes the information available on the bioavailability and bioaccessibility testing for Pb particles. The strengths and weaknesses of the procedures are explained and gaps in the current data available are identified

9.

Research article   Open Access

Several steps/day indicators predict changes in anthropometric outcomes: HUB City Steps

Jessica L Thomson, Alicia S Landry, Jamie M Zoellner, Catrine Tudor-Locke, Michael Webster, Carol Connell, Kathy Yadrick BMC Public Health 2012, 12:983 (15 November 2012)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access Highly Accessed

Comparative genomic analysis and phylogenetic position of Theileria equi

Lowell S Kappmeyer, Mathangi Thiagarajan, David R Herndon, Joshua D Ramsay, Elisabet Caler, Appolinaire Djikeng, Joseph J Gillespie, Audrey OT Lau, Eric H Roalson, Joana C Silva, Marta G Silva, Carlos E Suarez, Massaro W Ueti, Vishvanath M Nene, Robert H Mealey, Donald P Knowles, Kelly A Brayton BMC Genomics 2012, 13:603 (9 November 2012)

Abstract | Full text | PDF | PubMed

11.

Research   Open Access

Does availability of physical activity and food outlets differ by race and income? Findings from an enumeration study in a health disparate region

Jennie L Hill, Clarice Chau, Candice R Luebbering, Korine K Kolivras, Jamie Zoellner International Journal of Behavioral Nutrition and Physical Activity 2012, 9:105 (6 September 2012)

Abstract | Full text | PDF | PubMed

12.

Short Report   Open Access

Analysis of T-DNA alleles of flavonoid biosynthesis genes in Arabidopsis ecotype Columbia

Peter A Bowerman, Melissa V Ramirez, Michelle B Price, Richard F Helm, Brenda SJ Winkel BMC Research Notes 2012, 5:485 (4 September 2012)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access

Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs

Hong Zhu, Rui Xia, Bingyu Zhao, Yong-qiang An, Chris D Dardick, Ann M Callahan, Zongrang Liu BMC Plant Biology 2012, 12:149 (21 August 2012)

Abstract | Full text | PDF | PubMed

14.

Review   Open Access Highly Accessed

Transient defects of mitotic spindle geometry and chromosome segregation errors

William T Silkworth, Daniela Cimini Cell Division 2012, 7:19 (11 August 2012)

Abstract | Full text | PDF | PubMed

15.

Research article   Open Access Highly Accessed

Translational regulation of Anopheles gambiae mRNAs in the midgut during Plasmodium falciparum infection

Edward A Mead, Meng Li, Zhijian Tu, Jinsong Zhu BMC Genomics 2012, 13:366 (2 August 2012)

Abstract | Full text | PDF | PubMed

16.

Methodology article   Open Access Highly Accessed

Genome-wide identification of significant aberrations in cancer genome

Xiguo Yuan, Guoqiang Yu, Xuchu Hou, Ie-Ming Shih, Robert Clarke, Junying Zhang, Eric P Hoffman, Roger R Wang, Zhen Zhang, Yue Wang BMC Genomics 2012, 13:342 (27 July 2012)

Abstract | Full text | PDF | PubMed

17.

Software   Open Access Highly Accessed

Condor-COPASI: high-throughput computing for biochemical networks

Edward Kent, Stefan Hoops, Pedro Mendes BMC Systems Biology 2012, 6:91 (26 July 2012)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access

Transposable elements in phytopathogenic Verticillium spp.: insights into genome evolution and inter- and intra-specific diversification

Stefan G Amyotte, Xiaoping Tan, Kayla Pennerman, Maria del Mar Jimenez-Gasco, Steven J Klosterman, Li-Jun Ma, Katherine F Dobinson, Paola Veronese BMC Genomics 2012, 13:314 (16 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

19.

Poster presentation   Open Access

Compromise revisited: inhibitory synapse and electrical coupling effects on bilateral phasing in the leech heartbeat system

Adam L Weaver, Kristen B Cowens BMC Neuroscience 2012, 13(Suppl 1):P161 (16 July 2012)

Full text | PDF

20.

Proceedings   Open Access

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun'ichi Tsujii, Sophia Ananiadou BMC Bioinformatics 2012, 13(Suppl 11):S2 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

21.

Research   Open Access

Apple miRNAs and tasiRNAs with novel regulatory networks

Rui Xia, Hong Zhu, Yong-qiang An, Eric P Beers, Zongrang Liu Genome Biology 2012, 13:R47 (15 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A comprehensive analysis of short regulatory RNAs including, miRNAs, siRNAs and tasiRNAs in the apple tree Malus domestica Golden Delicious

22.

Research article   Open Access

A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells

Tian Hong, Jianhua Xing, Liwu Li, John J Tyson BMC Systems Biology 2012, 6:66 (14 June 2012)

Abstract | Full text | PDF | PubMed

23.

Research   Open Access

The role of lipooligosaccharide phosphorylcholine in colonization and pathogenesis of Histophilus somni in cattle

Shaadi F Elswaifi, William K Scarratt, Thomas J Inzana Veterinary Research 2012, 43:49 (7 June 2012)

Abstract | Full text | PDF | PubMed

24.

Research   Open Access

Modeling stochasticity and variability in gene regulatory networks

David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Seda Arat, Reinhard Laubenbacher EURASIP Journal on Bioinformatics and Systems Biology 2012, 2012:5 (6 June 2012)

Abstract | Full text | PDF | PubMed

25.

Research   Open Access

Growth promotion and colonization of switchgrass (Panicum virgatum) cv. Alamo by bacterial endophyte Burkholderia phytofirmans strain PsJN

Seonhwa Kim, Scott Lowman, Guichuan Hou, Jerzy Nowak, Barry Flinn, Chuansheng Mei Biotechnology for Biofuels 2012, 5:37 (30 May 2012)

Abstract | Full text | PDF | PubMed

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