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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Virginia Polytechnic and State University

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	1.	Technical advance In silico surveillance: evaluating outbreak detection with simulation models Bryan Lewis, Stephen Eubank, Allyson M Abrams, Ken Kleinman BMC Medical Informatics and Decision Making 2013, 13:12 (23 January 2013) Abstract \| Provisional PDF \| PubMed
	2.	Research article *Effects of the probiotic Lactobacillus animalis* in murine Mycobacterium avium subspecies paratuberculosis infection** Enusha Karunasena, Paresh C Kurkure, Russell D Lackey, Kevin Wyatt McMahon, Estevan P Kiernan, Suzanne Graham, Magdy S Alabady, David L Campos, Owatha L Tatum, Mindy M Brashears BMC Microbiology 2013, 13:8 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Meeting report Personal genomes and precision medicine Gareth Highnam, David Mittelman Genome Biology 2012, 13:324 (19 December 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A report of the fifth annual Personal Genomes and Medical Genomics meeting, held at Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA, November 14-17, 2012
	4.	Research Species-level classification of the vaginal microbiome Jennifer M Fettweis, Myrna G Serrano, Nihar U Sheth, Carly M Mayer, Abigail L Glascock, J Paul Brooks, Kimberly K Jefferson, Gregory A Buck BMC Genomics 2012, 13(Suppl 8):S17 (17 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	5.	Research A strategy to study pathway cross-talks of cells under repetitive exposure to stimuli Yan Fu, Xiaoshan Jiang, Hang Zhang, Jianhua Xing BMC Systems Biology 2012, 6(Suppl 3):S6 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Research article *Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture* Lecong Zhou, Jason A Holliday BMC Genomics 2012, 13:703 (14 December 2012) Abstract \| Full text \| PDF \| PubMed
	7.	Review Dietary biomarkers: advances, limitations and future directions Valisa E Hedrick, Andrea M Dietrich, Paul A Estabrooks, Jyoti Savla, Elena Serrano, Brenda M Davy Nutrition Journal 2012, 11:109 (14 December 2012) Abstract \| Full text \| PDF \| PubMed
	8.	Review Experimental determination of the oral bioavailability and bioaccessibility of lead particles Elise Deshommes, Robert Tardif, Marc Edwards, Sébastien Sauvé, Michèle Prévost Chemistry Central Journal 2012, 6:138 (22 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary This review summarizes the information available on the bioavailability and bioaccessibility testing for Pb particles. The strengths and weaknesses of the procedures are explained and gaps in the current data available are identified
	9.	Research article Several steps/day indicators predict changes in anthropometric outcomes: HUB City Steps Jessica L Thomson, Alicia S Landry, Jamie M Zoellner, Catrine Tudor-Locke, Michael Webster, Carol Connell, Kathy Yadrick BMC Public Health 2012, 12:983 (15 November 2012) Abstract \| Full text \| PDF \| PubMed
	10.	Research article Comparative genomic analysis and phylogenetic position of Theileria equi Lowell S Kappmeyer, Mathangi Thiagarajan, David R Herndon, Joshua D Ramsay, Elisabet Caler, Appolinaire Djikeng, Joseph J Gillespie, Audrey OT Lau, Eric H Roalson, Joana C Silva, Marta G Silva, Carlos E Suarez, Massaro W Ueti, Vishvanath M Nene, Robert H Mealey, Donald P Knowles, Kelly A Brayton BMC Genomics 2012, 13:603 (9 November 2012) Abstract \| Full text \| PDF \| PubMed
	11.	Research Does availability of physical activity and food outlets differ by race and income? Findings from an enumeration study in a health disparate region Jennie L Hill, Clarice Chau, Candice R Luebbering, Korine K Kolivras, Jamie Zoellner International Journal of Behavioral Nutrition and Physical Activity 2012, 9:105 (6 September 2012) Abstract \| Full text \| PDF \| PubMed
	12.	Short Report *Analysis of T-DNA alleles of flavonoid biosynthesis genes in Arabidopsis* ecotype Columbia** Peter A Bowerman, Melissa V Ramirez, Michelle B Price, Richard F Helm, Brenda SJ Winkel BMC Research Notes 2012, 5:485 (4 September 2012) Abstract \| Full text \| PDF \| PubMed
	13.	Research article *Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs* Hong Zhu, Rui Xia, Bingyu Zhao, Yong-qiang An, Chris D Dardick, Ann M Callahan, Zongrang Liu BMC Plant Biology 2012, 12:149 (21 August 2012) Abstract \| Full text \| PDF \| PubMed
	14.	Review Transient defects of mitotic spindle geometry and chromosome segregation errors William T Silkworth, Daniela Cimini Cell Division 2012, 7:19 (11 August 2012) Abstract \| Full text \| PDF \| PubMed
	15.	Research article *Translational regulation of Anopheles gambiae* mRNAs in the midgut during Plasmodium falciparum infection** Edward A Mead, Meng Li, Zhijian Tu, Jinsong Zhu BMC Genomics 2012, 13:366 (2 August 2012) Abstract \| Full text \| PDF \| PubMed
	16.	Methodology article Genome-wide identification of significant aberrations in cancer genome Xiguo Yuan, Guoqiang Yu, Xuchu Hou, Ie-Ming Shih, Robert Clarke, Junying Zhang, Eric P Hoffman, Roger R Wang, Zhen Zhang, Yue Wang BMC Genomics 2012, 13:342 (27 July 2012) Abstract \| Full text \| PDF \| PubMed
	17.	Software Condor-COPASI: high-throughput computing for biochemical networks Edward Kent, Stefan Hoops, Pedro Mendes BMC Systems Biology 2012, 6:91 (26 July 2012) Abstract \| Full text \| PDF \| PubMed
	18.	Research article *Transposable elements in phytopathogenic Verticillium* spp.: insights into genome evolution and inter- and intra-specific diversification** Stefan G Amyotte, Xiaoping Tan, Kayla Pennerman, Maria del Mar Jimenez-Gasco, Steven J Klosterman, Li-Jun Ma, Katherine F Dobinson, Paola Veronese BMC Genomics 2012, 13:314 (16 July 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	19.	Poster presentation Compromise revisited: inhibitory synapse and electrical coupling effects on bilateral phasing in the leech heartbeat system Adam L Weaver, Kristen B Cowens BMC Neuroscience 2012, 13(Suppl 1):P161 (16 July 2012) Full text \| PDF
	20.	Proceedings Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun'ichi Tsujii, Sophia Ananiadou BMC Bioinformatics 2012, 13(Suppl 11):S2 (26 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21.	Research Apple miRNAs and tasiRNAs with novel regulatory networks Rui Xia, Hong Zhu, Yong-qiang An, Eric P Beers, Zongrang Liu Genome Biology 2012, 13:R47 (15 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A comprehensive analysis of short regulatory RNAs including, miRNAs, siRNAs and tasiRNAs in the apple tree Malus domestica Golden Delicious
	22.	Research article A simple theoretical framework for understanding heterogeneous differentiation of CD4⁺ T cells Tian Hong, Jianhua Xing, Liwu Li, John J Tyson BMC Systems Biology 2012, 6:66 (14 June 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research *The role of lipooligosaccharide phosphorylcholine in colonization and pathogenesis of Histophilus somni* in cattle** Shaadi F Elswaifi, William K Scarratt, Thomas J Inzana Veterinary Research 2012, 43:49 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
	24.	Research Modeling stochasticity and variability in gene regulatory networks David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Seda Arat, Reinhard Laubenbacher EURASIP Journal on Bioinformatics and Systems Biology 2012, 2012:5 (6 June 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Research *Growth promotion and colonization of switchgrass (Panicum virgatum) cv. Alamo by bacterial endophyte Burkholderia phytofirmans* strain PsJN** Seonhwa Kim, Scott Lowman, Guichuan Hou, Jerzy Nowak, Barry Flinn, Chuansheng Mei Biotechnology for Biofuels 2012, 5:37 (30 May 2012) Abstract \| Full text \| PDF \| PubMed