1.
Retrovirus infected cells contain viral microRNAs
Zachary
A
Klase,
Gavin
C
Sampey,
Fatah
Kashanchi
Retrovirology 2013, 10 :15 (7 February 2013)
Abstract | Full text | PDF | PubMed
2.
CDK2 Regulates HIV-1 Transcription by Phosphorylation of CDK9 on Serine 90
Denitra
Breuer,
Alexander
Kotelkin,
Tatiana
Ammosova,
Namita
Kumari,
Andrey
Ivanov,
Andrey
V
Ilatovskiy,
Monique
Beullens,
Philip
R
Roane,
Mathieu
Bollen,
Michael
G
Petukhov,
Fatah
Kashanchi,
Sergei
Nekhai
Retrovirology 2012, 9 :94 (9 November 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
CDK2 phosphorylates CDK9 on Ser 90 to regulate HIV-1 transcription. The phosphorylation of Ser90 by CDK2 represents a novel mechanism of HIV-1 regulated transcription and provides a new strategy for activation of latent HIV-1 provirus.
3.
Industrial decline and labor reallocation in a transforming economy: Romania in early transition
John
S
Earle
IZA Journal of Labor & Development 2012, 1 :2 (6 November 2012)
Abstract | Full text | PDF
4.
A validation of ground ambulance pre-hospital times modeled using geographic information systems
Alka
B
Patel,
Nigel
M
Waters,
Ian
E
Blanchard,
Christopher
J
Doig,
William
A
Ghali
International Journal of Health Geographics 2012, 11 :42 (3 October 2012)
Abstract | Full text | PDF | PubMed
5.
Cessation of seizure-like oscillations by periodic stimulation in a neuron model with dynamic ion concentrations
Jeremy
Owen,
John
R
Cressman,
Ernest
Barreto
BMC Neuroscience 2012, 13 (Suppl 1):P182 (16 July 2012)
Full text | PDF
6.
Inverse stochastic resonance induced by ion channel noise
Muhammet
Uzuntarla,
John
R
Cressman,
Mahmut
Ozer,
Ernest
Barreto
BMC Neuroscience 2012, 13 (Suppl 1):P181 (16 July 2012)
Full text | PDF
7.
A dynamical study of pulse-coupled oscillators in the brain
Tanushree
Luke,
Ernest
Barreto,
Paul
So
BMC Neuroscience 2012, 13 (Suppl 1):O12 (16 July 2012)
Full text | PDF
8.
Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface
Brian
S
Olson,
Amarda
Shehu
Proteome Science 2012, 10 (Suppl 1):S5 (21 June 2012)
Abstract | Full text | PDF | PubMed
9.
The trinity of the cortical actin in the initiation of HIV-1 infection
Mark
Spear,
Jia
Guo,
Yuntao
Wu
Retrovirology 2012, 9 :45 (28 May 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
This review examines, in detail, the manifestation of the viral dependence on the actin cytoskeleton, and presents a model of how HIV utilizes actin dynamics to initiate infection.
10.
phishGILLNET—phishing detection methodology using probabilistic latent semantic analysis, AdaBoost, and co-training
Venkatesh
Ramanathan,
Harry
Wechsler
EURASIP Journal on Information Security 2012, 2012 :1 (26 March 2012)
Abstract | Full text | PDF
11.
New and novel intrinsic host repressive factors against HIV-1: PAF1 complex, HERC5 and others
Mudit
Tyagi,
Fatah
Kashanchi
Retrovirology 2012, 9 :19 (9 March 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A new strategy of screening using siRNA libraries has been employed to score for suppression of host restriction factors, ultimately leading to activation of the virus. This novel approach has now identified specific critical factors that may be part of the intracellular innate response to HIV-1 infection.
12.
The impact of IL28B genotype on the gene expression profile of patients with chronic hepatitis C treated with pegylated interferon alpha and ribavirin
Zobair
M
Younossi,
Aybike
Birerdinc,
Mike
Estep,
Maria
Stepanova,
Arian
Afendy,
Ancha
Baranova
Journal of Translational Medicine 2012, 10 :25 (7 February 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
13.
Joint association analysis of bivariate quantitative and qualitative traits
Mengdie
Yuan,
Guoqing
Diao
BMC Proceedings 2011, 5 (Suppl 9):S74 (29 November 2011)
Abstract | Full text | PDF
14.
Challenges to mapping the health risk of hepatitis A virus infection
Khayriyyah
Mohd Hanafiah,
Kathryn
H
Jacobsen,
Steven
T
Wiersma
International Journal of Health Geographics 2011, 10 :57 (18 October 2011)
Abstract | Full text | PDF | PubMed
15.
Methadone adverse reaction presenting with large increase in plasma methadone binding: a case series
Wenjie
J
Lu,
Weidong
Zhou,
Yvonne
Kreutz,
David
A
Flockhart
Journal of Medical Case Reports 2011, 5 :513 (10 October 2011)
Abstract | Full text | PDF | PubMed
16.
Non-Invasive markers for hepatic fibrosis
Ancha
Baranova,
Priyanka
Lal,
Aybike
Birerdinc,
Zobair
M
Younossi
BMC Gastroenterology 2011, 11 :91 (17 August 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
17.
Evaluation of short read metagenomic assembly
Anveshi
Charuvaka,
Huzefa
Rangwala
BMC Genomics 2011, 12 (Suppl 2):S8 (27 July 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
18.
Features of HTLV-1 transcriptional and chromatin remodeling dynamics emerge from ChIP-chip analysis
Mohammad
Heydarian,
Dowser
Alani,
Irene
Guendel,
Rachel
Van Duyne,
Tim
McCaffrey,
Sidney
W
Fu,
Kylene
Kehn-Hall,
Fatah
Kashanchi
Retrovirology 2011, 8 (Suppl 1):A181 (6 June 2011)
Full text | PDF
19.
Varying modulation of HTLV-1 LTR activity by BAF complexes
Rachel
Van Duyne,
Irene
Guendel,
Nazly
Shafagati,
Kylene
Kehn-Hall,
Rebecca
Easley,
Zachary
Klase,
Sergei
Nekhai,
Mudit
Tyagi,
Fatah
Kashanchi
Retrovirology 2011, 8 (Suppl 1):A180 (6 June 2011)
Full text | PDF
20.
Direct detection of diverse metabolic changes in virally transformed and Tax-expressing cells by mass spectrometry
Prabhakar
Sripadi,
Bindesh
Shrestha,
Rebecca
Easley,
Lawrence
Carpio,
Kylene
Kehn-Hall,
Sebastien
Chevalier,
Renaud
Mahieux,
Akos
Vertes,
Fatah
Kashanchi
Retrovirology 2011, 8 (Suppl 1):A179 (6 June 2011)
Full text | PDF
21.
Human T-Lymphotropic Virus Type 1 transcription and chromatin-remodeling complexes
Rebecca
Easley,
Lawrence
Carpio,
Irene
Guendel,
Zachary
Klase,
Soyun
Choi,
Kylene
Kehn-Hall,
Fatah
Kashanchi
Retrovirology 2011, 8 (Suppl 1):A178 (6 June 2011)
Full text | PDF
22.
Reverse-phase phosphoproteome analysis (RPMA) of signaling pathways induced by HTLV-1 infection
Taissia
G
Popova,
Aarthi
Narayanan,
Lance
Liotta,
Emanuel
F
Petricoin III,
Charles
Bailey,
Kylene
Kehn-Hall,
Fatah
Kashanchi
Retrovirology 2011, 8 (Suppl 1):A177 (6 June 2011)
Full text | PDF
23.
Localization and sub-cellular shuttling of HTLV-1 Tax with the RNAi machinery component Drosha
Rachel
Van Duyne,
Irene
Guendel,
Mudit
Tyagi,
Aarthi
Narayanan,
Zachary
Klase,
Kylene
Kehn-Hall,
John
Semmes,
Fatah
Kashanchi
Retrovirology 2011, 8 (Suppl 1):A159 (6 June 2011)
Full text | PDF
24.
The utilization of humanized mouse models for the study of inhibitors in HTLV-1 infection
Rachel
Van Duyne,
Irene
Guendel,
Kylene
Kehn-Hall,
Mohammed
Saifuddin,
Fatah
Kashanchi
Retrovirology 2011, 8 (Suppl 1):A28 (6 June 2011)
Full text | PDF
25.
An efficient algorithm for systematic analysis of nucleotide strings suitable for siRNA design
Ancha
Baranova,
Jonathan
Bode,
Ganiraju
Manyam,
Maria
Emelianenko
BMC Research Notes 2011, 4 :168 (27 May 2011)
Abstract | Full text | PDF | PubMed