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1.

Commentary   Open Access Highly Accessed

Retrovirus infected cells contain viral microRNAs

Zachary A Klase, Gavin C Sampey, Fatah Kashanchi Retrovirology 2013, 10:15 (7 February 2013)

Abstract | Full text | PDF | PubMed

2.

Research   Open Access Highly Accessed

CDK2 Regulates HIV-1 Transcription by Phosphorylation of CDK9 on Serine 90

Denitra Breuer, Alexander Kotelkin, Tatiana Ammosova, Namita Kumari, Andrey Ivanov, Andrey V Ilatovskiy, Monique Beullens, Philip R Roane, Mathieu Bollen, Michael G Petukhov, Fatah Kashanchi, Sergei Nekhai Retrovirology 2012, 9:94 (9 November 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

CDK2 phosphorylates CDK9 on Ser 90 to regulate HIV-1 transcription. The phosphorylation of Ser90 by CDK2 represents a novel mechanism of HIV-1 regulated transcription and provides a new strategy for activation of latent HIV-1 provirus.

3.

Original article   Open Access

Industrial decline and labor reallocation in a transforming economy: Romania in early transition

John S Earle IZA Journal of Labor & Development 2012, 1:2 (6 November 2012)

Abstract | Full text | PDF

4.

Research   Open Access

A validation of ground ambulance pre-hospital times modeled using geographic information systems

Alka B Patel, Nigel M Waters, Ian E Blanchard, Christopher J Doig, William A Ghali International Journal of Health Geographics 2012, 11:42 (3 October 2012)

Abstract | Full text | PDF | PubMed

5.

Poster presentation   Open Access

Cessation of seizure-like oscillations by periodic stimulation in a neuron model with dynamic ion concentrations

Jeremy Owen, John R Cressman, Ernest Barreto BMC Neuroscience 2012, 13(Suppl 1):P182 (16 July 2012)

Full text | PDF

6.

Poster presentation   Open Access

Inverse stochastic resonance induced by ion channel noise

Muhammet Uzuntarla, John R Cressman, Mahmut Ozer, Ernest Barreto BMC Neuroscience 2012, 13(Suppl 1):P181 (16 July 2012)

Full text | PDF

7.

Oral presentation   Open Access

A dynamical study of pulse-coupled oscillators in the brain

Tanushree Luke, Ernest Barreto, Paul So BMC Neuroscience 2012, 13(Suppl 1):O12 (16 July 2012)

Full text | PDF

8.

Proceedings   Open Access

Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface

Brian S Olson, Amarda Shehu Proteome Science 2012, 10(Suppl 1):S5 (21 June 2012)

Abstract | Full text | PDF | PubMed

9.

Review   Open Access Highly Accessed

The trinity of the cortical actin in the initiation of HIV-1 infection

Mark Spear, Jia Guo, Yuntao Wu Retrovirology 2012, 9:45 (28 May 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This review examines, in detail, the manifestation of the viral dependence on the actin cytoskeleton, and presents a model of how HIV utilizes actin dynamics to initiate infection.

10.

Research   Open Access Highly Accessed

phishGILLNET—phishing detection methodology using probabilistic latent semantic analysis, AdaBoost, and co-training

Venkatesh Ramanathan, Harry Wechsler EURASIP Journal on Information Security 2012, 2012:1 (26 March 2012)

Abstract | Full text | PDF

11.

Commentary   Open Access Highly Accessed

New and novel intrinsic host repressive factors against HIV-1: PAF1 complex, HERC5 and others

Mudit Tyagi, Fatah Kashanchi Retrovirology 2012, 9:19 (9 March 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A new strategy of screening using siRNA libraries has been employed to score for suppression of host restriction factors, ultimately leading to activation of the virus. This novel approach has now identified specific critical factors that may be part of the intracellular innate response to HIV-1 infection.

12.

Research   Open Access Highly Accessed

The impact of IL28B genotype on the gene expression profile of patients with chronic hepatitis C treated with pegylated interferon alpha and ribavirin

Zobair M Younossi, Aybike Birerdinc, Mike Estep, Maria Stepanova, Arian Afendy, Ancha Baranova Journal of Translational Medicine 2012, 10:25 (7 February 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

13.

Proceedings   Open Access

Joint association analysis of bivariate quantitative and qualitative traits

Mengdie Yuan, Guoqing Diao BMC Proceedings 2011, 5(Suppl 9):S74 (29 November 2011)

Abstract | Full text | PDF

14.

Research   Open Access Highly Accessed

Challenges to mapping the health risk of hepatitis A virus infection

Khayriyyah Mohd Hanafiah, Kathryn H Jacobsen, Steven T Wiersma International Journal of Health Geographics 2011, 10:57 (18 October 2011)

Abstract | Full text | PDF | PubMed

15.

Case report   Open Access Highly Accessed

Methadone adverse reaction presenting with large increase in plasma methadone binding: a case series

Wenjie J Lu, Weidong Zhou, Yvonne Kreutz, David A Flockhart Journal of Medical Case Reports 2011, 5:513 (10 October 2011)

Abstract | Full text | PDF | PubMed

16.

Review   Open Access Highly Accessed

Non-Invasive markers for hepatic fibrosis

Ancha Baranova, Priyanka Lal, Aybike Birerdinc, Zobair M Younossi BMC Gastroenterology 2011, 11:91 (17 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

17.

Proceedings   Open Access

Evaluation of short read metagenomic assembly

Anveshi Charuvaka, Huzefa Rangwala BMC Genomics 2011, 12(Suppl 2):S8 (27 July 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

18.

Meeting abstract   Open Access

Features of HTLV-1 transcriptional and chromatin remodeling dynamics emerge from ChIP-chip analysis

Mohammad Heydarian, Dowser Alani, Irene Guendel, Rachel Van Duyne, Tim McCaffrey, Sidney W Fu, Kylene Kehn-Hall, Fatah Kashanchi Retrovirology 2011, 8(Suppl 1):A181 (6 June 2011)

Full text | PDF

19.

Meeting abstract   Open Access

Varying modulation of HTLV-1 LTR activity by BAF complexes

Rachel Van Duyne, Irene Guendel, Nazly Shafagati, Kylene Kehn-Hall, Rebecca Easley, Zachary Klase, Sergei Nekhai, Mudit Tyagi, Fatah Kashanchi Retrovirology 2011, 8(Suppl 1):A180 (6 June 2011)

Full text | PDF

20.

Meeting abstract   Open Access

Direct detection of diverse metabolic changes in virally transformed and Tax-expressing cells by mass spectrometry

Prabhakar Sripadi, Bindesh Shrestha, Rebecca Easley, Lawrence Carpio, Kylene Kehn-Hall, Sebastien Chevalier, Renaud Mahieux, Akos Vertes, Fatah Kashanchi Retrovirology 2011, 8(Suppl 1):A179 (6 June 2011)

Full text | PDF

21.

Meeting abstract   Open Access

Human T-Lymphotropic Virus Type 1 transcription and chromatin-remodeling complexes

Rebecca Easley, Lawrence Carpio, Irene Guendel, Zachary Klase, Soyun Choi, Kylene Kehn-Hall, Fatah Kashanchi Retrovirology 2011, 8(Suppl 1):A178 (6 June 2011)

Full text | PDF

22.

Meeting abstract   Open Access

Reverse-phase phosphoproteome analysis (RPMA) of signaling pathways induced by HTLV-1 infection

Taissia G Popova, Aarthi Narayanan, Lance Liotta, Emanuel F Petricoin III, Charles Bailey, Kylene Kehn-Hall, Fatah Kashanchi Retrovirology 2011, 8(Suppl 1):A177 (6 June 2011)

Full text | PDF

23.

Meeting abstract   Open Access

Localization and sub-cellular shuttling of HTLV-1 Tax with the RNAi machinery component Drosha

Rachel Van Duyne, Irene Guendel, Mudit Tyagi, Aarthi Narayanan, Zachary Klase, Kylene Kehn-Hall, John Semmes, Fatah Kashanchi Retrovirology 2011, 8(Suppl 1):A159 (6 June 2011)

Full text | PDF

24.

Meeting abstract   Open Access

The utilization of humanized mouse models for the study of inhibitors in HTLV-1 infection

Rachel Van Duyne, Irene Guendel, Kylene Kehn-Hall, Mohammed Saifuddin, Fatah Kashanchi Retrovirology 2011, 8(Suppl 1):A28 (6 June 2011)

Full text | PDF

25.

Data Note   Open Access

An efficient algorithm for systematic analysis of nucleotide strings suitable for siRNA design

Ancha Baranova, Jonathan Bode, Ganiraju Manyam, Maria Emelianenko BMC Research Notes 2011, 4:168 (27 May 2011)

Abstract | Full text | PDF | PubMed

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