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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Virginia Commonwealth University

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	1.	Research Microglial activation decreases retention of the protease inhibitor saquinavir: implications for HIV treatment Shannon Dallas, Michelle L Block, Deborah M Thompson, Marcelo G Bonini, Patrick T Ronaldson, Reina Bendayan, David S Miller Journal of Neuroinflammation 2013, 10:58 (4 May 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Commentary Optimizing safe, comfortable ICU care through multi-professional quality improvement: just DO it Alison J Montpetit, Curtis N Sessler Critical Care 2013, 17:138 (30 April 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research Application of an interstitial and biodegradable balloon system for prostate-rectum separation during prostate cancer radiotherapy: a prospective multi-center study Eliahu Gez, Shmuel Cytron, Rahamin Ben Yosef, Daniel London, Benjamin W Corn, Shlomi Alani, Giovanni Scarzello, Fabrizio Dal Moro, Guido Sotti, Filiberto Zattoni, Ike Koziol, Taryn Torre, Matthew Bassignani, Shalom Kalnicki, Reza Ghavamian, Dukagjin Blakaj, Mitchell Anscher, Martin Sommerauer, Dieter Jocham, Corinna Melchert, Stefan Huttenlocher, Gyoergy Kovacs, Madhur Garg Radiation Oncology 2013, 8:96 (23 April 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research Effect of substrate stiffness on early human embryonic stem cell differentiation Nikolai Eroshenko, Rukmani Ramachandran, Vamsi K Yadavalli, Raj R Rao Journal of Biological Engineering 2013, 7:7 (21 March 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Methodology article An inferential framework for biological network hypothesis tests Phillip D Yates, Nitai D Mukhopadhyay BMC Bioinformatics 2013, 14:94 (14 March 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Research Improper inhaler technique is associated with poor asthma control and frequent emergency department visits Hamdan AL-Jahdali, Anwar Ahmed, Abdullah AL-Harbi, Mohd Khan, Salim Baharoon, Salih Bin Salih, Rabih Halwani, Saleh Al-Muhsen Allergy, Asthma & Clinical Immunology 2013, 9:8 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Software MethylPCA: a toolkit to control for confounders in methylome-wide association studies Wenan Chen, Guimin Gao, Srilaxmi Nerella, Christina M Hultman, Patrik KE Magnusson, Patrick F Sullivan, Karolina A Aberg, Edwin JCG van den Oord BMC Bioinformatics 2013, 14:74 (2 March 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Original research article Percutaneous endoscopic gastrostomy site metastasis from head and neck squamous cell carcinoma: case series and literature review Andrew T Huang, Alexandros Georgolios, Sasa Espino, Brian Kaplan, James Neifeld, Evan R Reiter Journal of Otolaryngology - Head and Neck Surgery 2013, 42:20 (28 February 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Methodology article Estimation of CpG coverage in whole methylome next-generation sequencing studies Edwin JCG van den Oord, Jozsef Bukszar, Gábor Rudolf, Srilaxmi Nerella, Joseph L McClay, Lin Y Xie, Karolina A Aberg BMC Bioinformatics 2013, 14:50 (12 February 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Research article A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes Bhakti Dwivedi, Bingjie Xue, Daniel Lundin, Robert A Edwards, Mya Breitbart BMC Evolutionary Biology 2013, 13:33 (7 February 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Research Discovery and validation of cell cycle arrest biomarkers in human acute kidney injury Kianoush Kashani, Ali Al-Khafaji, Thomas Ardiles, Antonio Artigas, Sean M Bagshaw, Max Bell, Azra Bihorac, Robert Birkhahn, Cynthia M Cely, Lakhmir S Chawla, Danielle L Davison, Thorsten Feldkamp, Lui G Forni, Michelle Gong, Kyle J Gunnerson, Michael Haase, James Hackett, Patrick M Honore, Eric AJ Hoste, Olivier Joannes-Boyau, Michael Joannidis, Patrick Kim, Jay L Koyner, Daniel T Laskowitz, Matthew E Lissauer, Gernot Marx, Peter A McCullough, Scott Mullaney, Marlies Ostermann, Thomas Rimmelé et al. Critical Care 2013, 17:R25 (6 February 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology \| Editor’s summary Urine TIMP-2, and IGFBP7, two novel biomarkers for risk stratification of acute kidney injury, have been discovered and validated in more than 1000 critically ill patients.
	12.	Research article Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework Gaurav Kumar, Edmond J Breen, Shoba Ranganathan BMC Systems Biology 2013, 7:12 (6 February 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Review Hormonal modulation of connective tissue homeostasis and sex differences in risk for osteoarthritis of the knee Barbara D Boyan, David A Hart, Roger M Enoka, Daniel P Nicolella, Eileen Resnick, Karen J Berkley, Kathleen A Sluka, C Kent Kwoh, Laura L Tosi, Mary I O’Connor, Richard D Coutts, Wendy M Kohrt Biology of Sex Differences 2013, 4:3 (4 February 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Poster presentation Quantification of thoracic aorta blood flow by magnetic resonance imaging during supine cycling exercise of increasing intensity Laura Ellwein, John F LaDisa, Stacy Leibham, Sheila Schindler-Ivens, Margaret M Samyn Journal of Cardiovascular Magnetic Resonance 2013, 15(Suppl 1):P239 (30 January 2013) Full text \| PDF
	15.	Poster presentation Comparison of methods for DE-CMR infarct size quantification - reproducibility among three core labs Igor Klem, Einar Heiberg, John D Grizzard, Lowie M Van Assche, Michele Parker, Hakan Arheden, Raymond J Kim Journal of Cardiovascular Magnetic Resonance 2013, 15(Suppl 1):P180 (30 January 2013) Full text \| PDF
	16.	Research article Mitochondrial quality, dynamics and functional capacity in Parkinson’s disease cybrid cell lines selected for Lewy body expression Emily N Cronin-Furman, M Kathleen Borland, Kristen E Bergquist, James P Bennett, Patricia A Trimmer Molecular Neurodegeneration 2013, 8:6 (26 January 2013) Abstract \| Full text \| PDF \| PubMed
	17.	Review 2013 WSES guidelines for management of intra-abdominal infections Massimo Sartelli, Pierluigi Viale, Fausto Catena, Luca Ansaloni, Ernest Moore, Mark Malangoni, Frederick A Moore, George Velmahos, Raul Coimbra, Rao Ivatury, Andrew Peitzman, Kaoru Koike, Ari Leppaniemi, Walter Biffl, Clay Cothren Burlew, Zsolt J Balogh, Ken Boffard, Cino Bendinelli, Sanjay Gupta, Yoram Kluger, Ferdinando Agresta, Salomone Di Saverio, Imtiaz Wani, Alex Escalona, Carlos Ordonez, Gustavo P Fraga, Gerson Alves Pereira, Miklosh Bala, Yunfeng Cui, Sanjay Marwah et al. World Journal of Emergency Surgery 2013, 8:3 (8 January 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	18.	Research article *Long term persistence of clonal malaria parasite Plasmodium falciparum* lineages in the Colombian Pacific region** Diego F Echeverry, Shalini Nair, Lyda Osorio, Sanjay Menon, Claribel Murillo, Tim JC Anderson BMC Genetics 2013, 14:2 (7 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Analysis of Plasmodium falciparum parasites from malaria patients in Colombia reveals strong subdivision and long-term persistence of clonal populations, highlighting that these aspects of population structure should be taken into account when designing drug resistance studies.
	19.	Research Changes in subcellular localization reveal interactions between human cytomegalovirus terminase subunits Jian Ben Wang, Yali Zhu, Michael A McVoy, Deborah S Parris Virology Journal 2012, 9:315 (21 December 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Research article An automated method for analysis of microcirculation videos for accurate assessment of tissue perfusion Sumeyra U Demir, Roya Hakimzadeh, Rosalyn Hobson Hargraves, Kevin R Ward, Eric V Myer, Kayvan Najarian BMC Medical Imaging 2012, 12:37 (21 December 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Factors associated with patient visits to the emergency department for asthma therapy Hamdan AL-Jahdali, Ahmed Anwar, Abdullah AL-Harbi, Salim Baharoon, Rabih Halwani, Abdulllah Al Shimemeri, Saleh Al-Muhsen BMC Pulmonary Medicine 2012, 12:80 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research Species-level classification of the vaginal microbiome Jennifer M Fettweis, Myrna G Serrano, Nihar U Sheth, Carly M Mayer, Abigail L Glascock, J Paul Brooks, Kimberly K Jefferson, Gregory A Buck BMC Genomics 2012, 13(Suppl 8):S17 (17 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	23.	Research Multi-species data integration and gene ranking enrich significant results in an alcoholism genome-wide association study Zhongming Zhao, An-Yuan Guo, Edwin JCG van den Oord, Fazil Aliev, Peilin Jia, Howard J Edenberg, Brien P Riley, Danielle M Dick, Jill C Bettinger, Andrew G Davies, Michael S Grotewiel, Marc A Schuckit, Arpana Agrawal, John Kramer, John I Nurnberger, Kenneth S Kendler, Bradley T Webb, Michael F Miles BMC Genomics 2012, 13(Suppl 8):S16 (17 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	24.	Research *Genomic sequence analysis and characterization of Sneathia amnii* sp. nov** Michael D Harwich, Myrna G Serrano, Jennifer M Fettweis, João MP Alves, Mark A Reimers, Gregory A Buck, Kimberly K Jefferson BMC Genomics 2012, 13(Suppl 8):S4 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Research RNA-Seq analysis implicates dysregulation of the immune system in schizophrenia Junzhe Xu, Jingchun Sun, Jingchun Chen, Lily Wang, Anna Li, Matthew Helm, Steven L Dubovsky, Silviu-Alin Bacanu, Zhongming Zhao, Xiangning Chen BMC Genomics 2012, 13(Suppl 8):S2 (17 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central