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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Carnegie Mellon University

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76.

Methodology article   Open Access

Human IL-12 p40 as a reporter gene for high-throughput screening of engineered mouse embryonic stem cells

Leonardo D'Aiuto, Clinton S Robison, Margherita Gigante, Edward Nwanegbo, Benjamin Shaffer, Meena Sukhwani, Carlos A Castro, J Richard Chaillet BMC Biotechnology 2008, 8:52 (3 June 2008)

Abstract | Full text | PDF | PubMed

77.

Research article   Open Access Highly Accessed

Serum biomarker profiles and response to neoadjuvant chemotherapy for locally advanced breast cancer

Brian M Nolen, Jeffrey R Marks, Shlomo Ta'san, Alex Rand, The Luong, Yun Wang, Kimberly Blackwell, Anna E Lokshin Breast Cancer Research 2008, 10:R45 (12 May 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

78.

Proceedings   Open Access

Transmembrane helix prediction using amino acid property features and latent semantic analysis

Madhavi Ganapathiraju, N Balakrishnan, Raj Reddy, Judith Klein-Seetharaman BMC Bioinformatics 2008, 9(Suppl 1):S4 (13 February 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

79.

Research article   Open Access

Impact of the solvent capacity constraint on E. coli metabolism

Alexei Vazquez, Qasim K Beg, Marcio A deMenezes, Jason Ernst, Ziv Bar-Joseph, Albert-László Barabási, László G Boros, Zoltán N Oltvai BMC Systems Biology 2008, 2:7 (23 January 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

80.

Research article   Open Access

Three-dimensional and thermal surface imaging produces reliable measures of joint shape and temperature: a potential tool for quantifying arthritis

Steven J Spalding, C Kent Kwoh, Robert Boudreau, Joseph Enama, Julie Lunich, Daniel Huber, Louis Denes, Raphael Hirsch Arthritis Research & Therapy 2008, 10:R10 (23 January 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

81.

Proceedings   Open Access

A mixture of feature experts approach for protein-protein interaction prediction

Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph BMC Bioinformatics 2007, 8(Suppl 10):S6 (21 December 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

82.

Research article   Open Access Highly Accessed

Direct maximum parsimony phylogeny reconstruction from genotype data

Srinath Sridhar, Fumei Lam, Guy E Blelloch, R Ravi, Russell Schwartz BMC Bioinformatics 2007, 8:472 (5 December 2007)

Abstract | Full text | PDF | PubMed

83.

Research article   Open Access Highly Accessed

Adult neurogenesis and specific replacement of interneuron subtypes in the mouse main olfactory bulb

Joshua Bagley, Greg LaRocca, Daniel A Jimenez, Nathaniel N Urban BMC Neuroscience 2007, 8:92 (9 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

84.

Methodology   Open Access

A method for generating uniform size-segregated pyrite particle fractions

Amy L Wolfe, Ran Liu, Brian W Stewart, Rosemary C Capo, David A Dzombak Geochemical Transactions 2007, 8:9 (10 October 2007)

Abstract | Full text | PDF | PubMed

85.

Research article   Open Access

BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features

Richard Tsai, Wen-Chi Chou, Ying-Shan Su, Yu-Chun Lin, Cheng-Lung Sung, Hong-Jie Dai, Irene Yeh, Wei Ku, Ting-Yi Sung, Wen-Lian Hsu BMC Bioinformatics 2007, 8:325 (1 September 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

86.

Research Article   Open Access

View Influence Analysis and Optimization for Multiview Face Recognition

Won-Sook Lee, Kyung-Ah Sohn EURASIP Journal on Image and Video Processing 2007, 2007:025409 (23 August 2007)

Abstract | Full text | PDF

87.

Research   Open Access

Combined analysis reveals a core set of cycling genes

Yong Lu, Shaun Mahony, Panayiotis V Benos, Roni Rosenfeld, Itamar Simon, Linda L Breeden, Ziv Bar-Joseph Genome Biology 2007, 8:R146 (24 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

The simultaneous analysis of expression data from multiple species reveals a core set of conserved cycling genes that is much larger than previously thought.

88.

Poster presentation   Open Access

Stimulus specific activity patterns in the granule cell networks of mice

Vikrant Kapoor, Nathaniel Urban BMC Neuroscience 2007, 8(Suppl 2):P173 (6 July 2007)

Full text | PDF

89.

Poster presentation   Open Access

Dendritic transmitter release and analog computation in mitral cells

Jason B Castro, Nathaniel N Urban BMC Neuroscience 2007, 8(Suppl 2):P127 (6 July 2007)

Full text | PDF

90.

Poster presentation   Open Access

Activity-dependent gating of lateral inhibition by correlated mitral cell activity in the mouse main olfactory bulb

Armen C Arevian, Nathaniel N Urban BMC Neuroscience 2007, 8(Suppl 2):P126 (6 July 2007)

Full text | PDF

91.

Poster presentation   Open Access

Stochastic synchrony of neuronal oscillators: a Fokker-Planck study with the finite-element method

Roberto F Galán, G Bard Ermentrout, Nathaniel N Urban BMC Neuroscience 2007, 8(Suppl 2):P57 (6 July 2007)

Full text | PDF

92.

Poster presentation   Open Access

Phase response curves in the characterization of epileptiform activity

Jose Velazquez, Luis Dominguez, Stewart Lo, Roberto Galán, Ramon Erra BMC Neuroscience 2007, 8(Suppl 2):P55 (6 July 2007)

Full text | PDF

93.

Research article   Open Access

A multiresolution approach to automated classification of protein subcellular location images

Amina Chebira, Yann Barbotin, Charles Jackson, Thomas Merryman, Gowri Srinivasa, Robert F Murphy, Jelena Kovačević BMC Bioinformatics 2007, 8:210 (19 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

94.

Research   Open Access

Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains

Justin S Hogg, Fen Z Hu, Benjamin Janto, Robert Boissy, Jay Hayes, Randy Keefe, J Christopher Post, Garth D Ehrlich Genome Biology 2007, 8:R103 (5 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment |  Editor’s summary

The genomes of 9 non-typeable H. influenzae clinical isolates were sequenced and compared with a reference strain, allowing the characterisation and modelling of the core-and supra genomes of this organism.

95.

Editorial   Open Access

Search and Retrieval of 3D Content and Associated Knowledge Extraction and Propagation

Petros Daras, Ming Ouhyoung, Tsuhan Chen EURASIP Journal on Advances in Signal Processing 2007, 2007:039792 (31 May 2007)

Full text | PDF

96.

Research   Open Access

Using visual feedback distortion to alter coordinated pinching patterns for robotic rehabilitation

Yoky Matsuoka, Bambi R Brewer, Roberta L Klatzky Journal of NeuroEngineering and Rehabilitation 2007, 4:17 (30 May 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This paper is part of a series of papers guest-edited by Dr Michelle Johnson. The first section of the series is devoted to New control and modeling strategies for Robot-Assisted Training. The paper describe the effectiveness of a novel visual distortion technique that uses error magnification to improve motor performance of a pinching task.

97.

Research article   Open Access

Designing and conducting tabletop exercises to assess public health preparedness for manmade and naturally occurring biological threats

David J Dausey, James W Buehler, Nicole Lurie BMC Public Health 2007, 7:92 (29 May 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

98.

Research Article   Open Access

Constructing Battery-Aware Virtual Backbones in Wireless Sensor Networks

Chi Ma, Yuanyuan Yang, Zhenghao Zhang EURASIP Journal on Wireless Communications and Networking 2007, 2007:040154 (23 May 2007)

Abstract | Full text | PDF

99.

Research article   Open Access Highly Accessed

A comparative genomics approach to identifying the plasticity transcriptome

Andreas R Pfenning, Russell Schwartz, Alison L Barth BMC Neuroscience 2007, 8:20 (13 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

100.

Research Article   Open Access

Tools for Protecting the Privacy of Specific Individuals in Video

Datong Chen, Yi Chang, Rong Yan, Jie Yang EURASIP Journal on Advances in Signal Processing 2007, 2007:075427 (9 January 2007)

Abstract | Full text | PDF

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