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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Carnegie Mellon University

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26.

Review   Open Access Highly Accessed

Human movement data for malaria control and elimination strategic planning

Deepa K Pindolia, Andres J Garcia, Amy Wesolowski, David L Smith, Caroline O Buckee, Abdisalan M Noor, Robert W Snow, Andrew J Tatem Malaria Journal 2012, 11:205 (18 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This paper usefully documents sources of information on migration which may be of relevance to malaria transmission.

27.

Nano Express   Open Access

Controlled reduction for size selective synthesis of thiolate-protected gold nanoclusters Aun(n = 20, 24, 39, 40)

Xiangming Meng, Zhao Liu, Manzhou Zhu, Rongchao Jin Nanoscale Research Letters 2012, 7:277 (30 May 2012)

Abstract | Full text | PDF | PubMed

28.

Research   Open Access

Exploring behaviors of stochastic differential equation models of biological systems using change of measures

Sumit Jha, Christopher Langmead BMC Bioinformatics 2012, 13(Suppl 5):S8 (12 April 2012)

Abstract | Full text | PDF | PubMed

29.

Software   Open Access

Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system

Ross E Curtis, Anuj Goyal, Eric P Xing BMC Genetics 2012, 13:24 (3 April 2012)

Abstract | Full text | PDF | PubMed

30.

Poster presentation   Open Access

The impact of physiological loading on immune cell infiltration and myocardial function evaluated by cardiac MRI: a comparison between non-working heart and working heart transplant models

Qing Ye, Yi-jen L Wu, Yeh Fang-Cheng, Li Liu, Brent Barbe, Lesley M Foley, T Hitchens, Chien Ho Journal of Cardiovascular Magnetic Resonance 2012, 14(Suppl 1):P220 (1 February 2012)

Full text | PDF

31.

Proceedings   Open Access

Learning generative models of molecular dynamics

Narges Razavian, Hetunandan Kamisetty, Christopher J Langmead BMC Genomics 2012, 13(Suppl 1):S5 (17 January 2012)

Abstract | Full text | PDF | PubMed

32.

Research article   Open Access Highly Accessed

Biophysical and structural considerations for protein sequence evolution

Johan A Grahnen, Priyanka Nandakumar, Jan Kubelka, David A Liberles BMC Evolutionary Biology 2011, 11:361 (16 December 2011)

Abstract | Full text | PDF | PubMed

33.

Research article   Open Access Highly Accessed

Exact score distribution computation for ontological similarity searches

Marcel H Schulz, Sebastian Köhler, Sebastian Bauer, Peter N Robinson BMC Bioinformatics 2011, 12:441 (12 November 2011)

Abstract | Full text | PDF | PubMed

34.

Research   Open Access

Single wall carbon nanotubes enter cells by endocytosis and not membrane penetration

Peter N Yaron, Brian D Holt, Philip A Short, Mathias Lösche, Mohammad F Islam, Kris Dahl Journal of Nanobiotechnology 2011, 9:45 (30 September 2011)

Abstract | Full text | PDF | PubMed

35.

Research article   Open Access Highly Accessed

Biological interaction networks are conserved at the module level

Guy E Zinman, Shan Zhong, Ziv Bar-Joseph BMC Systems Biology 2011, 5:134 (23 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology

36.

Research article   Open Access Highly Accessed

Multi-target QSAR modelling in the analysis and design of HIV-HCV co-inhibitors: an in-silico study

Qi Liu, Han Zhou, Lin Liu, Xi Chen, Ruixin Zhu, Zhiwei Cao BMC Bioinformatics 2011, 12:294 (20 July 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

37.

Research article   Open Access

Would school closure for the 2009 H1N1 influenza epidemic have been worth the cost?: a computational simulation of Pennsylvania

Shawn T Brown, Julie HY Tai, Rachel R Bailey, Philip C Cooley, William D Wheaton, Margaret A Potter, Ronald E Voorhees, Megan LeJeune, John J Grefenstette, Donald S Burke, Sarah M McGlone, Bruce Y Lee BMC Public Health 2011, 11:353 (20 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

38.

Research article   Open Access

Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model

Robert Boissy, Azad Ahmed, Benjamin Janto, Josh Earl, Barry G Hall, Justin S Hogg, Gordon D Pusch, Luisa N Hiller, Evan Powell, Jay Hayes, Susan Yu, Sandeep Kathju, Paul Stoodley, J Christopher Post, Garth D Ehrlich, Fen Z Hu BMC Genomics 2011, 12:187 (13 April 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

39.

Editorial   Open Access

Scalable Audio-Content Analysis

Bhiksha Raj, Paris Smaragdis, Malcolm Slaney, Chung-Hsien Wu, Liming Chen, Hyoung-Gook Kim EURASIP Journal on Audio, Speech, and Music Processing 2010, 2010:467278 (13 March 2011)

Full text | PDF

40.

Research   Open Access Highly Accessed

Myocardial extravascular extracellular volume fraction measurement by gadolinium cardiovascular magnetic resonance in humans: slow infusion versus bolus

Erik B Schelbert, Stephen M Testa, Christopher G Meier, William J Ceyrolles, Joshua E Levenson, Alexander J Blair, Peter Kellman, Bobby L Jones, Daniel R Ludwig, David Schwartzman, Sanjeev G Shroff, Timothy C Wong Journal of Cardiovascular Magnetic Resonance 2011, 13:16 (4 March 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

41.

Poster presentation   Open Access

Extracellular volume fraction measured by MOLLI: slow infusion versus bolus

Erik Schelbert, Stephen M Testa, Christopher G Meier, William J Ceyrolles, Joshua Levenson, Alex J Blair, Kathy S Puntil, Peter Kellman, Bobby L Jones, Daniel R Ludwig, Hua Zhong, David Schwartzman, Sanjeev G Shroff, Timothy C Wong Journal of Cardiovascular Magnetic Resonance 2011, 13(Suppl 1):P317 (2 February 2011)

Full text | PDF

42.

Oral presentation   Open Access

Exploiting physical properties in protein structure alignment

Shweta Shah, Nick Sahinidis BMC Bioinformatics 2010, 11(Suppl 10):O3 (7 December 2010)

Full text | PDF

43.

Research article   Open Access Highly Accessed

Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms

Kristen A Yankura, Megan L Martik, Charlotte K Jennings, Veronica F Hinman BMC Biology 2010, 8:143 (30 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Planktonic echinoderm embryos utilize ancient regulatory mechanisms to establish anterior neural patterning but not retinal patterning, revealing that complex regulatory gene networks can be uncoupled and work in a modular manner in sea star and sea urchins.

44.

Proceedings   Open Access Highly Accessed

Analysis and verification of the HMGB1 signaling pathway

Haijun Gong, Paolo Zuliani, Anvesh Komuravelli, James R Faeder, Edmund M Clarke BMC Bioinformatics 2010, 11(Suppl 7):S10 (15 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

45.

Research Article   Open Access

Utilization-Based Dynamic Scheduling Algorithm for Wireless Mesh Networks

Miray Kas, Ibrahim Korpeoglu, Ezhan Karasan EURASIP Journal on Wireless Communications and Networking 2010, 2010:312828 (11 October 2010)

Abstract | Full text | PDF

46.

Research article   Open Access

Combination of genomic approaches with functional genetic experiments reveals two modes of repression of yeast middle-phase meiosis genes

Michael Klutstein, Zahava Siegfried, Ariel Gispan, Shlomit Farkash-Amar, Guy Zinman, Ziv Bar-Joseph, Giora Simchen, Itamar Simon BMC Genomics 2010, 11:478 (17 August 2010)

Abstract | Full text | PDF | PubMed

47.

Research Article   Open Access

Unconstrained Iris Acquisition and Recognition Using COTS PTZ Camera

Shreyas Venugopalan, Marios Savvides EURASIP Journal on Advances in Signal Processing 2010, 2010:938737 (8 August 2010)

Abstract | Full text | PDF

48.

Research   Open Access

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering

Dwight Kuo, Kai Tan, Guy Zinman, Timothy Ravasi, Ziv Bar-Joseph, Trey Ideker Genome Biology 2010, 11:R77 (23 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Three yeast species respond to azole drugs in different ways and show different sensitivities to fluconazole

49.

Poster Presentation   Open Access

A practical demonstration of the computational benefits of biophysical diversity among neurons

Shreejoy J Tripathy, Krishnan Padmanabhan, Nathan N Urban BMC Neuroscience 2010, 11(Suppl 1):P164 (20 July 2010)

Full text | PDF

50.

Poster Presentation   Open Access

Amplification of asynchronous inhibition-mediated synchronization by feedback in recurrent networks

Sashi Marella, G Bard Ermentrout BMC Neuroscience 2010, 11(Suppl 1):P20 (20 July 2010)

Full text | PDF

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