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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Carnegie Mellon University

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1.

Research   Open Access Highly Accessed

Common genetic variants, acting additively, are a major source of risk for autism

Lambertus Klei, Stephan J Sanders, Michael T Murtha, Vanessa Hus, Jennifer K Lowe, A Willsey, Daniel Moreno-De-Luca, Timothy W Yu, Eric Fombonne, Daniel Geschwind, Dorothy E Grice, David H Ledbetter, Catherine Lord, Shrikant M Mane, Christa Martin, Donna M Martin, Eric M Morrow, Christopher A Walsh, Nadine M Melhem, Pauline Chaste, James S Sutcliffe, Matthew W State, Edwin H Cook, Kathryn Roeder, Bernie Devlin Molecular Autism 2012, 3:9 (15 October 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Common genetic variants have a substantial additive genetic effect on autism spectrum disorder liability and this effect differs between simplex and multiplex families.

2.

Original article   Open Access Highly Accessed

Notes on behavioral economics and labor market policy

Linda Babcock, William J Congdon, Lawrence F Katz, Sendhil Mullainathan IZA Journal of Labor Policy 2012, 1:2 (9 October 2012)

Abstract | Full text | PDF

3.

Review   Open Access Highly Accessed

RAGE (Receptor for Advanced Glycation Endproducts), RAGE Ligands, and their role in Cancer and Inflammation

Louis J Sparvero, Denise Asafu-Adjei, Rui Kang, Daolin Tang, Neilay Amin, Jaehyun Im, Ronnye Rutledge, Brenda Lin, Andrew A Amoscato, Herbert J Zeh, Michael T Lotze Journal of Translational Medicine 2009, 7:17 (17 March 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

4.

Software   Open Access Highly Accessed

STEM: a tool for the analysis of short time series gene expression data

Jason Ernst, Ziv Bar-Joseph BMC Bioinformatics 2006, 7:191 (5 April 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

5.

Research   Open Access Highly Accessed

Fluid-structure interaction in abdominal aortic aneurysms: effects of asymmetry and wall thickness

Christine M Scotti, Alexander D Shkolnik, Satish C Muluk, Ender A Finol BioMedical Engineering OnLine 2005, 4:64 (4 November 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

6.

Research   Open Access Highly Accessed

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Lourdes Peña-Castillo, Murat Tasan, Chad L Myers, Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel F Berriz, Francis D Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David P Hill, David Warde-Farley, Chris Grouios, Debajyoti Ray, Judith A Blake, Minghua Deng, Michael I Jordan, William S Noble, Quaid Morris, Judith Klein-Seetharaman, Ziv Bar-Joseph, Ting Chen, Fengzhu Sun, Olga G Troyanskaya, Edward M Marcotte, Dong Xu, Timothy R Hughes, Frederick P Roth et al. Genome Biology 2008, 9(Suppl 1):S2 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

7.

Software   Open Access Highly Accessed

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data

Marcel H Schulz, William E Devanny, Anthony Gitter, Shan Zhong, Jason Ernst, Ziv Bar-Joseph BMC Systems Biology 2012, 6:104 (16 August 2012)

Abstract | Full text | PDF | PubMed

8.

Research   Open Access

Single wall carbon nanotubes enter cells by endocytosis and not membrane penetration

Peter N Yaron, Brian D Holt, Philip A Short, Mathias Lösche, Mohammad F Islam, Kris Dahl Journal of Nanobiotechnology 2011, 9:45 (30 September 2011)

Abstract | Full text | PDF | PubMed

9.

Review   Open Access Highly Accessed

Human movement data for malaria control and elimination strategic planning

Deepa K Pindolia, Andres J Garcia, Amy Wesolowski, David L Smith, Caroline O Buckee, Abdisalan M Noor, Robert W Snow, Andrew J Tatem Malaria Journal 2012, 11:205 (18 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This paper usefully documents sources of information on migration which may be of relevance to malaria transmission.

10.

Research article   Open Access Highly Accessed

Serum biomarker profiles and response to neoadjuvant chemotherapy for locally advanced breast cancer

Brian M Nolen, Jeffrey R Marks, Shlomo Ta'san, Alex Rand, The Luong, Yun Wang, Kimberly Blackwell, Anna E Lokshin Breast Cancer Research 2008, 10:R45 (12 May 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

11.

Research article   Open Access

A test of financial incentives to improve warfarin adherence

Kevin G Volpp, George Loewenstein, Andrea B Troxel, Jalpa Doshi, Maureen Price, Mitchell Laskin, Stephen E Kimmel BMC Health Services Research 2008, 8:272 (23 December 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

12.

Research   Open Access

A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion

Daniele Catanzaro, Ramamoorthi Ravi, Russell Schwartz Algorithms for Molecular Biology 2013, 8:3 (23 January 2013)

Abstract | Full text | PDF | PubMed

13.

Research   Open Access Highly Accessed

Myocardial extravascular extracellular volume fraction measurement by gadolinium cardiovascular magnetic resonance in humans: slow infusion versus bolus

Erik B Schelbert, Stephen M Testa, Christopher G Meier, William J Ceyrolles, Joshua E Levenson, Alexander J Blair, Peter Kellman, Bobby L Jones, Daniel R Ludwig, David Schwartzman, Sanjeev G Shroff, Timothy C Wong Journal of Cardiovascular Magnetic Resonance 2011, 13:16 (4 March 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

14.

Research article   Open Access

Network analysis of team communication in a busy emergency department

P Daniel Patterson, Anthony J Pfeiffer, Matthew D Weaver, David Krackhardt, Robert M Arnold, Donald M Yealy, Judith R Lave BMC Health Services Research 2013, 13:109 (22 March 2013)

Abstract | Full text | PDF | PubMed

15.

Research   Open Access

Factors affecting plasmid production in Escherichia coli from a resource allocation standpoint

Drew S Cunningham, Richard R Koepsel, Mohammad M Ataai, Michael M Domach Microbial Cell Factories 2009, 8:27 (22 May 2009)

Abstract | Full text | PDF | PubMed

16.

Proceedings   Open Access

Accelerating read mapping with FastHASH

Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan BMC Genomics 2013, 14(Suppl 1):S13 (21 January 2013)

Abstract | Full text | PDF | PubMed

17.

Research   Open Access

Resolving spatial inconsistencies in chromosome conformation measurements

Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford Algorithms for Molecular Biology 2013, 8:8 (9 March 2013)

Abstract | Full text | PDF | PubMed

18.

Original article   Open Access

The use of cognitive ability measures as explanatory variables in regression analysis

Brian Junker, Lynne Schofield, Lowell J Taylor IZA Journal of Labor Economics 2012, 1:4 (9 October 2012)

Abstract | Full text | PDF

19.

Software   Open Access

Enabling dynamic network analysis through visualization in TVNViewer

Ross E Curtis, Jing Xiang, Ankur Parikh, Peter Kinnaird, Eric P Xing BMC Bioinformatics 2012, 13:204 (16 August 2012)

Abstract | Full text | PDF | PubMed

20.

Research article   Open Access

Designing and conducting tabletop exercises to assess public health preparedness for manmade and naturally occurring biological threats

David J Dausey, James W Buehler, Nicole Lurie BMC Public Health 2007, 7:92 (29 May 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

21.

Research   Open Access

Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms

Brenna S McCauley, Erin P Wright, Cameron Exner, Chisato Kitazawa, Veronica F Hinman EvoDevo 2012, 3:17 (9 August 2012)

Abstract | Full text | PDF | PubMed

22.

Research article   Open Access

Structured association analysis leads to insight into Saccharomyces cerevisiae gene regulation by finding multiple contributing eQTL hotspots associated with functional gene modules

Ross E Curtis, Seyoung Kim, John L Woolford Jr, Wenjie Xu, Eric P Xing BMC Genomics 2013, 14:196 (21 March 2013)

Abstract | Full text | PDF | PubMed

23.

Methodology   Open Access

A method for generating uniform size-segregated pyrite particle fractions

Amy L Wolfe, Ran Liu, Brian W Stewart, Rosemary C Capo, David A Dzombak Geochemical Transactions 2007, 8:9 (10 October 2007)

Abstract | Full text | PDF | PubMed

24.

Research   Open Access

Visualizing arthritic inflammation and therapeutic response by fluorine-19 magnetic resonance imaging (19F MRI)

Anthony Balducci, Brooke M Helfer, Eric T Ahrens, Charles F O’Hanlon, Amy K Wesa Journal of Inflammation 2012, 9:24 (21 June 2012)

Abstract | Full text | PDF | PubMed

25.

Methodology article   Open Access

Testing allele homogeneity: the problem of nested hypotheses

Rafael Izbicki, Victor Fossaluza, Ana Gabriela Hounie, Eduardo Yoshio Nakano, Carlos Alberto de Bragança Pereira BMC Genetics 2012, 13:103 (23 November 2012)

Abstract | Full text | PDF | PubMed

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