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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Carnegie Mellon University

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	1.	Research article Network analysis of team communication in a busy emergency department P Daniel Patterson, Anthony J Pfeiffer, Matthew D Weaver, David Krackhardt, Robert M Arnold, Donald M Yealy, Judith R Lave BMC Health Services Research 2013, 13:109 (22 March 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Research article *Structured association analysis leads to insight into Saccharomyces cerevisiae* gene regulation by finding multiple contributing eQTL hotspots associated with functional gene modules** Ross E Curtis, Seyoung Kim, John L Woolford Jr, Wenjie Xu, Eric P Xing BMC Genomics 2013, 14:196 (21 March 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research Resolving spatial inconsistencies in chromosome conformation measurements Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford Algorithms for Molecular Biology 2013, 8:8 (9 March 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Poster presentation Automated 3D morphometric difference biomarker for abnormal ventricular morphology Prahlad G Menon, Robert W Biederman Journal of Cardiovascular Magnetic Resonance 2013, 15(Suppl 1):E35 (30 January 2013) Full text \| PDF
	5.	Research A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion Daniele Catanzaro, Ramamoorthi Ravi, Russell Schwartz Algorithms for Molecular Biology 2013, 8:3 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Proceedings Accelerating read mapping with FastHASH Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan BMC Genomics 2013, 14(Suppl 1):S13 (21 January 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Methodology article Testing allele homogeneity: the problem of nested hypotheses Rafael Izbicki, Victor Fossaluza, Ana Gabriela Hounie, Eduardo Yoshio Nakano, Carlos Alberto de Bragança Pereira BMC Genetics 2012, 13:103 (23 November 2012) Abstract \| Full text \| PDF \| PubMed
	8.	Proceedings An efficient heuristic method for active feature acquisition and its application to protein-protein interaction prediction Mohamed Thahir, Tarun Sharma, Madhavi K Ganapathiraju BMC Proceedings 2012, 6(Suppl 7):S2 (13 November 2012) Abstract \| Full text \| PDF
	9.	Proceedings Identifying stage-specific protein subnetworks for colorectal cancer Sinan Erten, Salim A Chowdhury, Xiaowei Guan, Rod K Nibbe, Jill S Barnholtz-Sloan, Mark R Chance, Mehmet Koyutürk BMC Proceedings 2012, 6(Suppl 7):S1 (13 November 2012) Abstract \| Full text \| PDF
	10.	Research Shorebird patches as fingerprints of fractal coastline fluctuations due to climate change Matteo Convertino, Adam Bockelie, Gregory A Kiker, Rafael Muñoz-Carpena, Igor Linkov Ecological Processes 2012, 1:9 (30 October 2012) Abstract \| Full text \| PDF
	11.	Software Coral: an integrated suite of visualizations for comparing clusterings Darya Filippova, Aashish Gadani, Carl Kingsford BMC Bioinformatics 2012, 13:276 (29 October 2012) Abstract \| Full text \| PDF \| PubMed
	12.	Research Sources of non-compliance with clinical practice guidelines in trauma triage: a decision science study Deepika Mohan, Matthew R Rosengart, Coreen Farris, Baruch Fischhoff, Derek C Angus, Amber E Barnato Implementation Science 2012, 7:103 (25 October 2012) Abstract \| Full text \| PDF \| PubMed
	13.	Research Common genetic variants, acting additively, are a major source of risk for autism Lambertus Klei, Stephan J Sanders, Michael T Murtha, Vanessa Hus, Jennifer K Lowe, A Willsey, Daniel Moreno-De-Luca, Timothy W Yu, Eric Fombonne, Daniel Geschwind, Dorothy E Grice, David H Ledbetter, Catherine Lord, Shrikant M Mane, Christa Martin, Donna M Martin, Eric M Morrow, Christopher A Walsh, Nadine M Melhem, Pauline Chaste, James S Sutcliffe, Matthew W State, Edwin H Cook, Kathryn Roeder, Bernie Devlin Molecular Autism 2012, 3:9 (15 October 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Common genetic variants have a substantial additive genetic effect on autism spectrum disorder liability and this effect differs between simplex and multiplex families.
	14.	Research Understanding intra-neighborhood patterns in PM_2.5 and PM₁₀ using mobile monitoring in Braddock, PA Brett J Tunno, Kyra Naumoff Shields, Paul Lioy, Nanjun Chu, Joseph B Kadane, Bambang Parmanto, Gede Pramana, Jennifer Zora, Cliff Davidson, Fernando Holguin, Jane E Clougherty Environmental Health 2012, 11:76 (10 October 2012) Abstract \| Full text \| PDF \| PubMed
	15.	Original article The use of cognitive ability measures as explanatory variables in regression analysis Brian Junker, Lynne Schofield, Lowell J Taylor IZA Journal of Labor Economics 2012, 1:4 (9 October 2012) Abstract \| Full text \| PDF
	16.	Original article Notes on behavioral economics and labor market policy Linda Babcock, William J Congdon, Lawrence F Katz, Sendhil Mullainathan IZA Journal of Labor Policy 2012, 1:2 (9 October 2012) Abstract \| Full text \| PDF
	17.	Research Parsimonious reconstruction of network evolution Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford Algorithms for Molecular Biology 2012, 7:25 (19 September 2012) Abstract \| Full text \| PDF \| PubMed
	18.	Research Verify level control criteria for multi-level cell flash memories and their applications Yongjune Kim, Jaehong Kim, Jun Jin Kong, B V K Vijaya Kumar, Xin Li EURASIP Journal on Advances in Signal Processing 2012, 2012:196 (5 September 2012) Abstract \| Full text \| PDF
	19.	Research article A support vector machine based test for incongruence between sets of trees in tree space David C Haws, Peter Huggins, Eric M O’Neill, David W Weisrock, Ruriko Yoshida BMC Bioinformatics 2012, 13:210 (21 August 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Software Enabling dynamic network analysis through visualization in TVNViewer Ross E Curtis, Jing Xiang, Ankur Parikh, Peter Kinnaird, Eric P Xing BMC Bioinformatics 2012, 13:204 (16 August 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Software DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data Marcel H Schulz, William E Devanny, Anthony Gitter, Shan Zhong, Jason Ernst, Ziv Bar-Joseph BMC Systems Biology 2012, 6:104 (16 August 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms Brenna S McCauley, Erin P Wright, Cameron Exner, Chisato Kitazawa, Veronica F Hinman EvoDevo 2012, 3:17 (9 August 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Poster presentation Adaptation shapes spike train correlations: theory and application to tinnitus Gabriel Koch Ocker, Thanos Tzounopoulos, Brent Doiron BMC Neuroscience 2012, 13(Suppl 1):P146 (16 July 2012) Full text \| PDF
	24.	Research article A minimal ligand binding pocket within a network of correlated mutations identified by multiple sequence and structural analysis of G protein coupled receptors Subhodeep Moitra, Kalyan C Tirupula, Judith Klein-Seetharaman, Christopher Langmead BMC Biophysics 2012, 5:13 (29 June 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Research Visualizing arthritic inflammation and therapeutic response by fluorine-19 magnetic resonance imaging (¹⁹F MRI) Anthony Balducci, Brooke M Helfer, Eric T Ahrens, Charles F O’Hanlon, Amy K Wesa Journal of Inflammation 2012, 9:24 (21 June 2012) Abstract \| Full text \| PDF \| PubMed