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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Carnegie Mellon University

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1.

Poster presentation   Open Access

Automated 3D morphometric difference biomarker for abnormal ventricular morphology

Prahlad G Menon, Robert W Biederman Journal of Cardiovascular Magnetic Resonance 2013, 15(Suppl 1):E35 (30 January 2013)

Full text | PDF

2.

Proceedings   Open Access

Accelerating read mapping with FastHASH

Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan BMC Genomics 2013, 14(Suppl 1):S13 (21 January 2013)

Abstract | Full text | PDF | PubMed

3.

Methodology article   Open Access

Testing allele homogeneity: the problem of nested hypotheses

Rafael Izbicki, Victor Fossaluza, Ana Gabriela Hounie, Eduardo Yoshio Nakano, Carlos Alberto de Bragança Pereira BMC Genetics 2012, 13:103 (23 November 2012)

Abstract | Full text | PDF | PubMed

4.

Proceedings   Open Access

An efficient heuristic method for active feature acquisition and its application to protein-protein interaction prediction

Mohamed Thahir, Tarun Sharma, Madhavi K Ganapathiraju BMC Proceedings 2012, 6(Suppl 7):S2 (13 November 2012)

Abstract | Full text | PDF

5.

Proceedings   Open Access

Identifying stage-specific protein subnetworks for colorectal cancer

Sinan Erten, Salim A Chowdhury, Xiaowei Guan, Rod K Nibbe, Jill S Barnholtz-Sloan, Mark R Chance, Mehmet Koyutürk BMC Proceedings 2012, 6(Suppl 7):S1 (13 November 2012)

Abstract | Full text | PDF

6.

Research   Open Access

Shorebird patches as fingerprints of fractal coastline fluctuations due to climate change

Matteo Convertino, Adam Bockelie, Gregory A Kiker, Rafael Muñoz-Carpena, Igor Linkov Ecological Processes 2012, 1:9 (30 October 2012)

Abstract | Full text | PDF

7.

Software   Open Access Highly Accessed

Coral: an integrated suite of visualizations for comparing clusterings

Darya Filippova, Aashish Gadani, Carl Kingsford BMC Bioinformatics 2012, 13:276 (29 October 2012)

Abstract | Full text | PDF | PubMed

8.

Research   Open Access

Sources of non-compliance with clinical practice guidelines in trauma triage: a decision science study

Deepika Mohan, Matthew R Rosengart, Coreen Farris, Baruch Fischhoff, Derek C Angus, Amber E Barnato Implementation Science 2012, 7:103 (25 October 2012)

Abstract | Full text | PDF | PubMed

9.

Research   Open Access Highly Accessed

Common genetic variants, acting additively, are a major source of risk for autism

Lambertus Klei, Stephan J Sanders, Michael T Murtha, Vanessa Hus, Jennifer K Lowe, A Willsey, Daniel Moreno-De-Luca, Timothy W Yu, Eric Fombonne, Daniel Geschwind, Dorothy E Grice, David H Ledbetter, Catherine Lord, Shrikant M Mane, Christa Martin, Donna M Martin, Eric M Morrow, Christopher A Walsh, Nadine M Melhem, Pauline Chaste, James S Sutcliffe, Matthew W State, Edwin H Cook, Kathryn Roeder, Bernie Devlin Molecular Autism 2012, 3:9 (15 October 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Common genetic variants have a substantial additive genetic effect on autism spectrum disorder liability and this effect differs between simplex and multiplex families.

10.

Original article   Open Access

The use of cognitive ability measures as explanatory variables in regression analysis

Brian Junker, Lynne Schofield, Lowell J Taylor IZA Journal of Labor Economics 2012, 1:4 (9 October 2012)

Abstract | Full text | PDF

11.

Original article   Open Access

Notes on behavioral economics and labor market policy

Linda Babcock, William J Congdon, Lawrence F Katz, Sendhil Mullainathan IZA Journal of Labor Policy 2012, 1:2 (9 October 2012)

Abstract | Full text | PDF

12.

Research   Open Access

Parsimonious reconstruction of network evolution

Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford Algorithms for Molecular Biology 2012, 7:25 (19 September 2012)

Abstract | Full text | PDF | PubMed

13.

Research   Open Access

Verify level control criteria for multi-level cell flash memories and their applications

Yongjune Kim, Jaehong Kim, Jun Jin Kong, B V K Vijaya Kumar, Xin Li EURASIP Journal on Advances in Signal Processing 2012, 2012:196 (5 September 2012)

Abstract | Full text | PDF

14.

Research article   Open Access

A support vector machine based test for incongruence between sets of trees in tree space

David C Haws, Peter Huggins, Eric M O’Neill, David W Weisrock, Ruriko Yoshida BMC Bioinformatics 2012, 13:210 (21 August 2012)

Abstract | Full text | PDF | PubMed

15.

Software   Open Access

Enabling dynamic network analysis through visualization in TVNViewer

Ross E Curtis, Jing Xiang, Ankur Parikh, Peter Kinnaird, Eric P Xing BMC Bioinformatics 2012, 13:204 (16 August 2012)

Abstract | Full text | PDF | PubMed

16.

Software   Open Access Highly Accessed

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data

Marcel H Schulz, William E Devanny, Anthony Gitter, Shan Zhong, Jason Ernst, Ziv Bar-Joseph BMC Systems Biology 2012, 6:104 (16 August 2012)

Abstract | Full text | PDF | PubMed

17.

Research   Open Access

Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms

Brenna S McCauley, Erin P Wright, Cameron Exner, Chisato Kitazawa, Veronica F Hinman EvoDevo 2012, 3:17 (9 August 2012)

Abstract | Full text | PDF | PubMed

18.

Poster presentation   Open Access

Adaptation shapes spike train correlations: theory and application to tinnitus

Gabriel Koch Ocker, Thanos Tzounopoulos, Brent Doiron BMC Neuroscience 2012, 13(Suppl 1):P146 (16 July 2012)

Full text | PDF

19.

Research article   Open Access

A minimal ligand binding pocket within a network of correlated mutations identified by multiple sequence and structural analysis of G protein coupled receptors

Subhodeep Moitra, Kalyan C Tirupula, Judith Klein-Seetharaman, Christopher Langmead BMC Biophysics 2012, 5:13 (29 June 2012)

Abstract | Full text | PDF | PubMed

20.

Research   Open Access

Visualizing arthritic inflammation and therapeutic response by fluorine-19 magnetic resonance imaging (19F MRI)

Anthony Balducci, Brooke M Helfer, Eric T Ahrens, Charles F O’Hanlon, Amy K Wesa Journal of Inflammation 2012, 9:24 (21 June 2012)

Abstract | Full text | PDF | PubMed

21.

Review   Open Access Highly Accessed

Human movement data for malaria control and elimination strategic planning

Deepa K Pindolia, Andres J Garcia, Amy Wesolowski, David L Smith, Caroline O Buckee, Abdisalan M Noor, Robert W Snow, Andrew J Tatem Malaria Journal 2012, 11:205 (18 June 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This paper usefully documents sources of information on migration which may be of relevance to malaria transmission.

22.

Nano Express   Open Access

Controlled reduction for size selective synthesis of thiolate-protected gold nanoclusters Aun(n = 20, 24, 39, 40)

Xiangming Meng, Zhao Liu, Manzhou Zhu, Rongchao Jin Nanoscale Research Letters 2012, 7:277 (30 May 2012)

Abstract | Full text | PDF | PubMed

23.

Research   Open Access

Exploring behaviors of stochastic differential equation models of biological systems using change of measures

Sumit Jha, Christopher Langmead BMC Bioinformatics 2012, 13(Suppl 5):S8 (12 April 2012)

Abstract | Full text | PDF | PubMed

24.

Software   Open Access

Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system

Ross E Curtis, Anuj Goyal, Eric P Xing BMC Genetics 2012, 13:24 (3 April 2012)

Abstract | Full text | PDF | PubMed

25.

Poster presentation   Open Access

The impact of physiological loading on immune cell infiltration and myocardial function evaluated by cardiac MRI: a comparison between non-working heart and working heart transplant models

Qing Ye, Yi-jen L Wu, Yeh Fang-Cheng, Li Liu, Brent Barbe, Lesley M Foley, T Hitchens, Chien Ho Journal of Cardiovascular Magnetic Resonance 2012, 14(Suppl 1):P220 (1 February 2012)

Full text | PDF

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