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1.

Research article   Open Access

Selective photoinactivation of Candida albicans in the non-vertebrate host infection model Galleria mellonella

José Chibebe Junior, Caetano P Sabino, Xiaojiang Tan, Juliana C Junqueira, Yan Wang, Beth B Fuchs, Antonio OC Jorge, George P Tegos, Michael R Hamblin, Eleftherios Mylonakis BMC Microbiology 2013, 13:217 (1 October 2013)

Abstract | Full text | PDF

2.

Poster presentation   Open Access

Naturally-arising amino acid polymorphisms of HIV-1 Nef that differentially modulate downregulation of HLA-A and HLA-B molecules

Macdonald Mahiti, Philip Mwimanzi, Yoko Ogata, Bruce Walker, Zabrina Brumme, Mark Brockman, Takamasa Ueno Retrovirology 2013, 10(Suppl 1):P54 (19 September 2013)

Full text | PDF

3.

Oral presentation   Open Access

Molecular architecture of the uncleaved HIV-1 envelope glycoprotein trimer

Youdong Mao, Luis Castillo-Menendez, Liping Wang, Christopher Gu, Alon Herschhorn, Anik Désormeaux, Andres Finzi, Shi-Hua Xiang, Joseph G Sodroski Retrovirology 2013, 10(Suppl 1):O1 (19 September 2013)

Full text | PDF

4.

Research   Open Access

Engineering xylose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production

Kazuhiko Kurosawa, Sandra J Wewetzer, Anthony J Sinskey Biotechnology for Biofuels 2013, 6:134 (16 September 2013)

Abstract | Full text | PDF | PubMed

5.

Research   Open Access Highly Accessed

Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes

Jaclyn K Mann, Helen Byakwaga, Xiaomei T Kuang, Anh Q Le, Chanson J Brumme, Philip Mwimanzi, Saleha Omarjee, Eric Martin, Guinevere Q Lee, Bemuluyigza Baraki, Ryan Danroth, Rosemary McCloskey, Conrad Muzoora, David R Bangsberg, Peter W Hunt, Philip JR Goulder, Bruce D Walker, P Harrigan, Jeff N Martin, Thumbi Ndung’u, Mark A Brockman, Zabrina L Brumme Retrovirology 2013, 10:100 (16 September 2013)

Abstract | Full text | PDF | PubMed

6.

Commentary   Open Access Highly Accessed

Shared learning in an interconnected world: innovations to advance global health equity

Agnes Binagwaho, Cameron T Nutt, Vincent Mutabazi, Corine Karema, Sabin Nsanzimana, Michel Gasana, Peter C Drobac, Michael L Rich, Parfait Uwaliraye, Jean Nyemazi, Michael R Murphy, Claire M Wagner, Andrew Makaka, Hinda Ruton, Gita N Mody, Danielle R Zurovcik, Jonathan A Niconchuk, Cathy Mugeni, Fidele Ngabo, Jean de Dieu Ngirabega, Anita Asiimwe, Paul E Farmer Globalization and Health 2013, 9:37 (30 August 2013)

Abstract | Full text | PDF |  Editor’s summary

Agnes Binagwaho and colleagues outline the need to explore how lessons from Rwanda can be utilized to improve global health systems in an inter-connected world.

7.

Oral presentation   Open Access

What have genome-wide association studies taught us about cGMP and blood pressure regulation?

Christopher Newton-Cheh BMC Pharmacology and Toxicology 2013, 14(Suppl 1):O5 (29 August 2013)

Full text | PDF

8.

Original article   Open Access

Surface modification of a polyhedral oligomeric silsesquioxane poly(carbonate-urea) urethane (POSS-PCU) nanocomposite polymer as a stent coating for enhanced capture of endothelial progenitor cells

Aaron Tan, Yasmin Farhatnia, Debbie Goh, Natasha G, Achala de Mel, Jing Lim, Swee-Hin Teoh, Andrey V Malkovskiy, Reema Chawla, Jayakumar Rajadas, Brian G Cousins, Michael R Hamblin, Mohammad S Alavijeh, Alexander M Seifalian Biointerphases 2013, 8:23 (23 August 2013)

Abstract | Full text | PDF

9.

Methodology article   Open Access Highly Accessed

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

Lucas Swanson, Gordon Robertson, Karen L Mungall, Yaron S Butterfield, Readman Chiu, Richard D Corbett, T Docking, Donna Hogge, Shaun D Jackman, Richard A Moore, Andrew J Mungall, Ka Nip, Jeremy DK Parker, Jenny Qian, Anthony Raymond, Sandy Sung, Angela Tam, Nina Thiessen, Richard Varhol, Sherry Wang, Deniz Yorukoglu, YongJun Zhao, Pamela A Hoodless, S Sahinalp, Aly Karsan, Inanc Birol BMC Genomics 2013, 14:550 (14 August 2013)

Abstract | Full text | PDF | PubMed

10.

Research   Open Access

Incorporating the effects of humidity in a mechanistic model of Anopheles gambiae mosquito population dynamics in the Sahel region of Africa

Teresa K Yamana, Elfatih A B Eltahir Parasites & Vectors 2013, 6:235 (9 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

We proposed a new equation to describe Anopheles gambiae s.l. mosquito survival as a function of temperature and relative humidity and demonstrate that relative humidity can play a significant role in malaria transmission dynamics. Image: Dry conditions in the Sahel.

11.

Research article   Open Access

Interventionally implanted port catheter systems for hepatic arterial infusion of chemotherapy in patients with primary liver cancer: A phase II-study (NCT00356161)

Marianne Sinn, Annett Nicolaou, Jens Ricke, Pjotr Podrabsky, Daniel Seehofer, Bernhard Gebauer, Maciej Pech, Peter Neuhaus, Bernd Dörken, Hanno Riess, Bert Hildebrandt BMC Gastroenterology 2013, 13:125 (9 August 2013)

Abstract | Full text | PDF | PubMed

12.

Short report   Open Access

The effect of vibrotactile feedback on postural sway during locomotor activities

Kathleen H Sienko, M Balkwill, Lars I E Oddsson, Conrad Wall Journal of NeuroEngineering and Rehabilitation 2013, 10:93 (9 August 2013)

Abstract | Full text | PDF | PubMed

13.

Methodology article   Open Access

A simple methodology to assess endolysosomal protease activity involved in antigen processing in human primary cells

Archana Vaithilingam, Nicole Y Lai, Ellen Duong, Julie Boucau, Yang Xu, Mariko Shimada, Malini Gandhi, Sylvie Le Gall BMC Cell Biology 2013, 14:35 (9 August 2013)

Abstract | Full text | PDF | PubMed

14.

Research article   Open Access

Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis

Alberto Pallavicini, Adriana Canapa, Marco Barucca, Jessica Alfőldi, Maria Biscotti, Francesco Buonocore, Gianluca De Moro, Federica Di Palma, Anna Fausto, Mariko Forconi, Marco Gerdol, Daisy Makapedua, Jason Turner-Meier, Ettore Olmo, Giuseppe Scapigliati BMC Genomics 2013, 14:538 (8 August 2013)

Abstract | Full text | PDF | PubMed

15.

Research   Open Access Highly Accessed

Linking environmental variability to village-scale malaria transmission using a simple immunity model

Teresa K Yamana, Arne Bomblies, Ibrahim M Laminou, Jean-Bernard Duchemin, Elfatih A B Eltahir Parasites & Vectors 2013, 6:226 (7 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A model was developed to provide a mechanistic link between spatial and temporal environmental variability and village-scale malaria transmission. Incorporating acquired immunity into the model allowed simulation of prevalence in the two villages, and isolation of the effects of acquired immunity in dampening the difference in prevalence between the villages. Image: Schematic of malaria model.

16.

Review   Subscription Highly Accessed

Functional profiling of the gut microbiome in disease-associated inflammation

Daniela Börnigen, Xochitl C Morgan, Eric A Franzosa, Boyu Ren, Ramnik J Xavier, Wendy S Garrett, Curtis Huttenhower Genome Medicine 2013, 5:65 (31 July 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Curtis Huttenhower, Wendy Garrett and colleagues review meta'omic approaches for functional profiling of the gut microbiome in inflammatory and autoimmune diseases and the translational implications.

17.

Research   Open Access

The strength of genetic interactions scales weakly with mutational effects

Andrea Velenich, Jeff Gore Genome Biology 2013, 14:R76 (26 July 2013)

Abstract | Provisional PDF | PubMed |  Editor’s summary

A simple and surprisingly weak scaling law for epistasis is revealed in the DRYGIN large-scale yeast genetic interaction dataset

18.

Research   Open Access Highly Accessed

Dysregulated Tim-3 expression on natural killer cells is associated with increased Galectin-9 levels in HIV-1 infection

Stephanie Jost, Uriel Y Moreno-Nieves, Wilfredo F Garcia-Beltran, Keith Rands, Jeff Reardon, Ildiko Toth, Alicja Piechocka-Trocha, Marcus Altfeld, Marylyn M Addo Retrovirology 2013, 10:74 (18 July 2013)

Abstract | Full text | PDF | PubMed

19.

Research   Open Access Highly Accessed

A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design

Robin P Smith, Samantha J Riesenfeld, Alisha K Holloway, Qiang Li, Karl K Murphy, Natalie M Feliciano, Lorenzo Orecchia, Nir Oksenberg, Katherine S Pollard, Nadav Ahituv Genome Biology 2013, 14:R72 (18 July 2013)

Abstract | Full text | PDF | PubMed | 1 comment |  Editor’s summary

All possible 6-mers are incorporated into a compact set of 15-mer synthetic enhancer sequences, which are then screened in zebrafish embryos

20.

Research article   Open Access Highly Accessed

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

Alexis P Yelton, Luis R Comolli, Nicholas B Justice, Cindy Castelle, Vincent J Denef, Brian C Thomas, Jillian F Banfield BMC Genomics 2013, 14:485 (17 July 2013)

Abstract | Full text | PDF | PubMed

21.

Nano Express   Open Access

Free-field characterization via directional transmission through a nanoaperture

Jussi Rahomäki, Heikki J Hyvärinen, Shakil Rehman, Jari Turunen Nanoscale Research Letters 2013, 8:326 (16 July 2013)

Abstract | Full text | PDF | PubMed

22.

Research   Open Access

EMG-based pattern recognition approach in post stroke robot-aided rehabilitation: a feasibility study

Benedetta Cesqui, Peppino Tropea, Silvestro Micera, Hermano Krebs Journal of NeuroEngineering and Rehabilitation 2013, 10:75 (15 July 2013)

Abstract | Full text | PDF | PubMed | 1 comment

23.

Research article   Open Access Highly Accessed

Genetic basis for phenotypic differences between different Toxoplasma gondii type I strains

Ninghan Yang, Andrew Farrell, Wendy Niedelman, Mariane Melo, Diana Lu, Lindsay Julien, Gabor T Marth, Marc-Jan Gubbels, Jeroen PJ Saeij BMC Genomics 2013, 14:467 (10 July 2013)

Abstract | Full text | PDF | PubMed

24.

Research   Open Access

A modular framework for implementing joint wireless network coding and scheduling algorithms

Ioannis Broustis, Georgios S Paschos, Dimitris Syrivelis, Leonidas Georgiadis, Leandros Tassiulas EURASIP Journal on Wireless Communications and Networking 2013, 2013:187 (9 July 2013)

Abstract | Full text | PDF

25.

Poster presentation   Open Access

Local activity in dendrites controls STDP by altering NMDA receptor kinetics

Rajeev V Rikhye, Xulin Tan, Antonius MJ Van Dongen BMC Neuroscience 2013, 14(Suppl 1):P399 (8 July 2013)

Full text | PDF

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