1.
A multi-center study on the regenerative effects of erythropoietin in burn and scalding injuries: study protocol for a randomized controlled trial
Christina
Günter,
Augustinus
Bader,
Ulf
Dornseifer,
Silvia
Egert,
Sebastian
Dunda,
Gerrit
Grieb,
Thomas
Wolter,
Norbert
Pallua,
Tobias
von Wild,
Frank
Siemers,
Peter
Mailänder,
Oliver
Thamm,
Carsten
Ernert,
Michael
Steen,
Reiner
Sievers,
Bert
Reichert,
Afshin
Rahmanian-Schwarz,
Hans
Schaller,
Bernd
Hartmann,
Max
Otte,
Victoria
Kehl,
Christian
Ohmann,
Wolfgang
Jelkmann,
Hans-Günther
Machens
Trials 2013, 14 :124 (3 May 2013)
Abstract | Full text | PDF
2.
Sixty years of genome biology
W
Doolittle,
Peter
Fraser,
Mark
B
Gerstein,
Brenton
R
Graveley,
Steven
Henikoff,
Curtis
Huttenhower,
Alicia
Oshlack,
Chris
P
Ponting,
John
L
Rinn,
Michael
C
Schatz,
Jernej
Ule,
Detlef
Weigel,
George
M
Weinstock
Genome Biology 2013, 14 :113 (25 April 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Members of Genome Biology's Editorial Board select their highlights from the 60 years of genome biology that followed the double helix
3.
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan
Kim,
Geo
Pertea,
Cole
Trapnell,
Harold
Pimentel,
Ryan
Kelley,
Steven
L
Salzberg
Genome Biology 2013, 14 :R36 (25 April 2013)
Abstract | Provisional PDF
| PubMed
|
Editor’s summary
A major update to TopHat, the popular Bowtie-based spliced aligner
4.
Basic and clinical immunology – 3013. Resource limited estimation of HIV-1 viral load from CD4 cell count using coupled bacterial foraging/jumping frogs algorithm
Kamalanand
Krishnamurthy,
Mannar
Ponnuswamy
World Allergy Organization Journal 2013, 6 (Suppl 1):P189 (23 April 2013)
Full text | PDF
5.
Monocytes/macrophages support mammary tumor invasivity by co-secreting lineage-specific EGFR ligands and a STAT3 activator
Philip
Vlaicu,
Philipp
Mertins,
Thomas
Mayr,
Peter
Widschwendter,
Beyhan
Ataseven,
Bernhard
Högel,
Wolfgang
Eiermann,
Pjotr
Knyazev,
Axel
Ullrich
BMC Cancer 2013, 13 :197 (18 April 2013)
Abstract | Full text | PDF | PubMed
6.
Modular glycosphere assays for high-throughput functional characterization of influenza viruses
Sven
N
Hobbie,
Karthik
Viswanathan,
Ido
Bachelet,
Udayanath
Aich,
Zachary
Shriver,
Vidya
Subramanian,
Rahul
Raman,
Ram
Sasisekharan
BMC Biotechnology 2013, 13 :34 (15 April 2013)
Abstract | Provisional PDF
| PubMed
7.
The ESR1 gene is associated with risk for canine mammary tumours
Kaja Sverdrup
Borge,
Malin
Melin,
Patricio
Rivera,
Stein Istre
Thoresen,
Matthew Thomas
Webster,
Henrik
von Euler,
Kerstin
Lindblad-Toh,
Frode
Lingaas
BMC Veterinary Research 2013, 9 :69 (10 April 2013)
Abstract | Full text | PDF | PubMed
8.
Chromosomal architecture changes upon cell differentiation
Maxim
Imakaev,
Geoffrey
Fudenberg,
Leonid
Mirny
Epigenetics & Chromatin 2013, 6 (Suppl 1):P130 (8 April 2013)
Full text | PDF
9.
S cerevisiae genome as a confined equilibrium polymer brush
Anton
Goloborodko,
Jon
Belton,
Geoffrey
Fudenberg,
Maxim
Imakaev,
Job
Dekker,
Leonid
Mirny
Epigenetics & Chromatin 2013, 6 (Suppl 1):P129 (8 April 2013)
Full text | PDF
10.
Polymer models of yeast S. cerevisiae genome organization
Geoff
Fudenberg,
Jon-Matthew
Belton,
Anton
Goloborodko,
Maxim
Imakaev,
Job
Dekker,
Leonid
Mirny
Epigenetics & Chromatin 2013, 6 (Suppl 1):P128 (8 April 2013)
Full text | PDF
11.
Polymer models of topological insulators
Boryana
Doyle,
Maxim
Imakaev,
Geoffrey
Fudenberg,
Leonid
Mirny
Epigenetics & Chromatin 2013, 6 (Suppl 1):P127 (8 April 2013)
Full text | PDF
12.
Fragile X mental retardation protein and synaptic plasticity
Michael
S
Sidorov,
Benjamin
D
Auerbach,
Mark
F
Bear
Molecular Brain 2013, 6 :15 (8 April 2013)
Abstract | Full text | PDF | PubMed | F1000 Biology
13.
Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
Gerald
Quon,
Syed
Haider,
Amit
G
Deshwar,
Ang
Cui,
Paul
C
Boutros,
Quaid
Morris
Genome Medicine 2013, 5 :29 (28 March 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
The ISOpure algorithm generates a sample-specific gene expression profile, from which the impact of heterogeneous tumor composition is removed, improving prediction of clinical outcome.
14.
Social sustainability in certification schemes for biofuel production: an explorative analysis against the background of land use constraints in Brazil
Anna
Mohr,
Linda
Bausch
Energy, Sustainability and Society 2013, 3 :6 (21 March 2013)
Abstract | Full text | PDF
15.
Review of Tackling Long-Term Global Energy Problems: The Contribution of Social Science by Daniel Spreng, Thomas Flüeler, David L. Goldblatt and Jürg Minsch (Editors)
Linda
Bausch,
Anna
Mohr
Energy, Sustainability and Society 2013, 3 :5 (20 March 2013)
Abstract | Full text | PDF
16.
A systems-based approach to analyse the host response in murine lung macrophages challenged with respiratory syncytial virus
Laxmi Iyer
Ravi,
Liang
Li,
Richard
Sutejo,
Hui
Chen,
Pui San
Wong,
Boon Huan
Tan,
Richard
J
Sugrue
BMC Genomics 2013, 14 :190 (18 March 2013)
Abstract | Full text | PDF | PubMed
17.
Sex-specific chromatin states in mammalian fetal germ cells
Bluma
J
Lesch,
David
C
Page
Epigenetics & Chromatin 2013, 6 (Suppl 1):P45 (18 March 2013)
Full text | PDF
18.
Retrotransposition of gene transcripts leads to structural variation in mammalian genomes
Adam
D
Ewing,
Tracy
J
Ballinger,
Dent
Earl,
Christopher
C
Harris,
Li
Ding,
Richard
K
Wilson,
David
Haussler
Genome Biology 2013, 14 :R22 (13 March 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
An analysis of gene retrocopy insertion polymorphisms in the germlines of individual humans, chimpanzees and mice, and in cancerous somatic tissues
19.
The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosis from cynomolgus macaque infection
Mark
N
Ragheb,
Christopher
B
Ford,
Michael
R
Chase,
Philana Ling
Lin,
JoAnne
L
Flynn,
Sarah
M
Fortune
BMC Genomics 2013, 14 :145 (5 March 2013)
Abstract | Full text | PDF | PubMed
20.
Circulating cardio-enriched microRNAs are associated with long-term prognosis following myocardial infarction
Olof
Gidlöf,
J Gustav
Smith,
Kazuma
Miyazu,
Patrik
Gilje,
Anna
Spencer,
Sten
Blomquist,
David
Erlinge
BMC Cardiovascular Disorders 2013, 13 :12 (28 February 2013)
Abstract | Full text | PDF | PubMed
21.
Migraine without aura: genome-wide association analysis identifies several novel susceptibility
Boukje
de Vries,
Tobias
Freilinger,
Verneri
Anttila,
Rainer
Malik,
Mikko
Kallela,
Gisela
M
Terwindt,
Patricia
Pozo-Rosich,
Bendik
Winsvold,
Dale
R
Nyholt,
Willebrordus
PJ
van Oosterhout,
Ville
Artto,
Unda
Todt,
Eija
Hämäläinen,
Jèssica
Fernández-Morales,
Mark
A
Louter,
Mari
A
Kaunisto,
Jean
Schoenen,
Olli
Raitakari,
Terho
Lehtimäki,
Marta
Vila-Pueyo,
Hartmut
Göbel,
Erich
Wichmann,
Cèlia
Sintas,
Andre
G
Uitterlinden,
Albert
Hofman,
Fernando
Rivadeneira,
Axel
Heinze,
Erling
Tronvik,
Cornelia
M
van Duijn,
Jaakko
Kaprio,
Bru
Cormand,
Maija
Wessman,
Rune
R
Frants,
Thomas
Meitinger,
Bertram
Müller-Myhsok,
John-Anker
Zwart,
Markus
Färkkilä,
Alfons
Macaya,
Michel
D
Ferrari,
Christian
Kubisch,
Aarno
Palotie,
Martin
Dichgans,
Arn
MJM
van den Maagdenberg,
et al.
The Journal of Headache and Pain 2013, $article.volume.volumeNumber (Suppl 1):P18 (21 February 2013)
Full text | PDF
22.
Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta
Stephen
R
Fairclough,
Zehua
Chen,
Eric
Kramer,
Qiandong
Zeng,
Sarah
Young,
Hugh
M
Robertson,
Emina
Begovic,
Daniel
J
Richter,
Carsten
Russ,
M Jody
Westbrook,
Gerard
Manning,
B Franz
Lang,
Brian
Haas,
Chad
Nusbaum,
Nicole
King
Genome Biology 2013, 14 :R15 (18 February 2013)
Abstract | Provisional PDF
| PubMed
|
Editor’s summary
Genome sequencing of Salpingoeca rosetta reveals insights into the genome composition of the metazoan ancestor and the evolution of multicellularity
23.
Genome-wide map of quantified epigenetic changes during in vitro chondrogenic differentiation of primary human mesenchymal stem cells
Sarah
R
Herlofsen,
Jan Christian
Bryne,
Torill
Høiby,
Li
Wang,
Robbyn
Issner,
Xiaolan
Zhang,
Michael
J
Coyne,
Patrick
Boyle,
Hongcang
Gu,
Leonardo
A
Meza-Zepeda,
Philippe
Collas,
Tarjei
S
Mikkelsen,
Jan
E
Brinchmann
BMC Genomics 2013, 14 :105 (15 February 2013)
Abstract | Full text | PDF | PubMed
24.
A phase II, sham-controlled, double-blinded study testing the safety and efficacy of the coronary sinus reducer in patients with refractory angina: study protocol for a randomized controlled trial
E Marc
Jolicœur,
Shmuel
Banai,
Timothy
D
Henry,
Marc
Schwartz,
Serge
Doucet,
Christopher
J
White,
Elazer
Edelman,
Stefan
Verheye
Trials 2013, 14 :46 (15 February 2013)
Abstract | Full text | PDF | PubMed
25.
Individual patient data meta-analysis for the clinical assessment of coronary computed tomography angiography: protocol of the Collaborative Meta-Analysis of Cardiac CT (CoMe-CCT)
Georg
M
Schuetz,
Peter
Schlattmann,
Stephan
Achenbach,
Matthew
Budoff,
Mario
J
Garcia,
Robert
Roehle,
Gianluca
Pontone,
Willem Bob
Meijboom,
Daniele
Andreini,
Hatem
Alkadhi,
Lily
Honoris,
Nuno
Bettencourt,
Jörg
Hausleiter,
Sebastian
Leschka,
Bernhard
L
Gerber,
Matthijs
FL
Meijs,
Abbas Arjmand
Shabestari,
Akira
Sato,
Elke
Zimmermann,
Uwe
J
Schoepf,
Axel
Diederichsen,
David
A
Halon,
Vladimir
Mendoza-Rodriguez,
Ashraf
Hamdan,
Bjarne
L
Nørgaard,
Harald
Brodoefel,
Kristian
A
Øvrehus,
Shona
MM
Jenkins,
Bjørn
A
Halvorsen,
Johannes
Rixe
et al.
Systematic Reviews 2013, 2 :13 (15 February 2013)
Abstract | Full text | PDF | PubMed