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Member - Brandeis University

Characterized by academic excellence since its founding in 1948, Brandeis is the youngest private research university, as well as the only nonsectarian Jewish-sponsored college or university in the country.

http://www.brandeis.edu/

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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Brandeis University

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	1.	Oral presentation Chromatin modifications and dynamics during repair of a double-strand chromosome break in budding yeast James E Haber, Cheng-Sheng Lee, Kihoon Lee, Michael Tsabar, Wade Hicks, Gaelle Legube Epigenetics & Chromatin 2013, 6(Suppl 1):O16 (18 March 2013) Full text \| PDF
	2.	Review The CaMKII/NMDAR complex as a molecular memory Magdalena Sanhueza, John Lisman Molecular Brain 2013, 6:10 (14 February 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Comment Open questions - in brief: Beyond -omics, missing motor proteins, and getting from molecules to organisms Stephen J Benkovic, Julie Theriot, Dagmar Ringe BMC Biology 2013, 11:8 (31 January 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Comment Hypothesis-driven genomics pays off Gregory A Petsko Genome Biology 2012, 13:176 (30 October 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Greg Petsko on deCode's rocky road to AD drug discovery
	5.	Meeting Report Performance measures for substance use disorders – what research is needed? Deborah W Garnick, Constance M Horgan, Andrea Acevedo, Frank McCorry, Constance Weisner Addiction Science & Clinical Practice 2012, 7:18 (11 September 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Research article Characteristics of practitioners in a private managed behavioral health plan Sharon Reif, Maria E Torres, Constance M Horgan, Elizabeth L Merrick BMC Health Services Research 2012, 12:283 (28 August 2012) Abstract \| Full text \| PDF \| PubMed
	7.	Research article A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools Karin Verspoor, Kevin Cohen, Arrick Lanfranchi, Colin Warner, Helen L Johnson, Christophe Roeder, Jinho D Choi, Christopher Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A Baumgartner, Michael Bada, Martha Palmer, Lawrence E Hunter BMC Bioinformatics 2012, 13:207 (17 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	8.	Research Unintended consequences of cigarette price changes for alcohol drinking behaviors across age groups: evidence from pooled cross sections Deborah L McLellan, Dominic Hodgkin, Pebbles Fagan, Sharon Reif, Constance M Horgan Substance Abuse Treatment, Prevention, and Policy 2012, 7:28 (11 July 2012) Abstract \| Full text \| PDF \| PubMed
	9.	Comment Out of Africa Gregory A Petsko Genome Biology 2012, 13:162 (29 June 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Greg Petsko suggests five disreputable ways of making a fortune in science.
	10.	Comment Goodbye, Columbus Gregory A Petsko Genome Biology 2012, 13:155 (18 May 2012) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology \| Editor’s summary Guaranteeing experimental outcomes and findings: funding then and now
	11.	Methodology Online self-administered training for post-traumatic stress disorder treatment providers: design and methods for a randomized, prospective intervention study Josef I Ruzek, Raymond C Rosen, Lisa Marceau, Mary Larson, Donn W Garvert, Lauren Smith, Anne Stoddard Implementation Science 2012, 7:43 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12.	Comment Mending walls Gregory A Petsko BMC Biology 2012, 10:41 (11 May 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The real topic of Gregory Petsko's Comment in our Metabolism diet and disease series is not, despite its title, mending walls, but patterns of comorbidity that argue for cross-disciplinary research: obesity and cancer are linked, for example, but apparently not if you are also schizophrenic.
	13.	Research Biotemplating rod-like viruses for the synthesis of copper nanorods and nanowires Jing C Zhou, Carissa M Soto, Mu-San Chen, Michael A Bruckman, Martin H Moore, Edward Barry, Banahalli R Ratna, Pehr E Pehrsson, Bradley R Spies, Tammie S Confer Journal of Nanobiotechnology 2012, 10:18 (1 May 2012) Abstract \| Full text \| PDF \| PubMed
	14.	Comment Economies of scale Gregory A Petsko Genome Biology 2012, 13:154 (30 April 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The current glut of postdoctoral and graduate scientists can be addressed by applying economic principles.
	15.	Comment Apocalypse now? Gregory A Petsko Genome Biology 2012, 13:151 (30 March 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Greg Petsko identifies some signs of the coming end of the world and, in that context, urges readers to pay close attention to the coming US presidential election
	16.	Research article How much can we gain from improved efficiency? An examination of performance of national HIV/AIDS programs and its determinants in low- and middle-income countries Wu Zeng, Donald S Shepard, Jon Chilingerian, Carlos Avila-Figueroa BMC Health Services Research 2012, 12:74 (24 March 2012) Abstract \| Full text \| PDF \| PubMed
	17.	Research article Pattern and levels of spending allocated to HIV prevention programs in low- and middle-income countries Peter Amico, Benjamin Gobet, Carlos Avila-Figueroa, Christian Aran, Paul De Lay BMC Public Health 2012, 12:221 (21 March 2012) Abstract \| Full text \| PDF \| PubMed
	18.	Comment A case of the flu Gregory A Petsko Genome Biology 2012, 13:146 (24 February 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The public perception of science is a crucial factor in whether the availability of recent work on constructing a virulent strain of influenza should be restricted
	19.	Comment The dog particle Gregory A Petsko Genome Biology 2012, 13:142 (30 January 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary In a big announcement suspiciously soon before their funding is renewed, canine researchers have news about the Briggs Noson
	20.	Research Substance abuse treatment client experience in an employed population: results of a client survey Elizabeth L Merrick, Sharon Reif, Deirdre Hiatt, Dominic Hodgkin, Constance M Horgan, Grant Ritter Substance Abuse Treatment, Prevention, and Policy 2012, 7:4 (17 January 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Comment The Columnist Manifesto Gregory A Petsko Genome Biology 2011, 12:136 (28 December 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Scientists need to explain to the public what science is and why it needs funding, especially when the economic situation is bad
	22.	Comment Dominoes Gregory A Petsko Genome Biology 2011, 12:134 (30 November 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary If we fund the next big science program, how many smaller research programs will receive no funding as a consequence?
	23.	Research On universal common ancestry, sequence similarity, and phylogenetic structure: the sins of P-values and the virtues of Bayesian evidence Douglas L Theobald Biology Direct 2011, 6:60 (24 November 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Douglas Theobald, in response to recent criticisms, provides evidence to further support his claim that Darwin's hypothesis that all life on earth has a universal common ancestor has been formally confirmed by a homology independent statistic test.
	24.	Comment Bailing out Gregory A Petsko Genome Biology 2011, 12:131 (29 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Let us shout to the public and private sectors, this is not the time to be bailing out
	25.	Research Chronic disease and recent addiction treatment utilization among alcohol and drug dependent adults Sharon Reif, Mary Jo Larson, Debbie M Cheng, Donald Allensworth-Davies, Jeffrey Samet, Richard Saitz Substance Abuse Treatment, Prevention, and Policy 2011, 6:28 (18 October 2011) Abstract \| Full text \| PDF \| PubMed
	26.	Comment The one new journal we might actually need Gregory A Petsko Genome Biology 2011, 12:129 (29 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The one thing that I actually do want for Christmas: another scientific journal
	27.	Research article Genome-wide examination of the transcriptional response to ecdysteroids 20-hydroxyecdysone and ponasterone A in Drosophila melanogaster Sarah E Gonsalves, Scott J Neal, Amy S Kehoe, J Westwood BMC Genomics 2011, 12:475 (29 September 2011) Abstract \| Full text \| PDF \| PubMed
	28.	Comment Nothing to do and all day to do it in Gregory A Petsko Genome Biology 2011, 12:126 (31 August 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The perfect end to a perfect vacation day
	29.	Comment Food of the dogs Gregory A Petsko Genome Biology 2011, 12:122 (25 July 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Human evolution and the Paleofood movement
	30.	Short Report Resource flows and levels of spending for the response to HIV and AIDS in Belarus Valentina I Kachan, Alena I Tkachova, Eleanora Gvozdeva, Ilona Urbanovich, Anna Yakusik, Peter Amico, Carlos Avila-Figueroa BMC Research Notes 2011, 4:248 (21 July 2011) Abstract \| Full text \| PDF \| PubMed
	31.	Comment Risky business Gregory A Petsko Genome Biology 2011, 12:119 (30 June 2011) Full text \| PDF \| PubMed \| Editor’s summary Greater risk in funding scientific research could lead to better results
	32.	Comment In praise of model organisms Gregory A Petsko Genome Biology 2011, 12:115 (30 May 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Basic research in model organisms is crucial and needs defending against claims that it is irrelevant to human biology and disease.
	33.	Research Functional connectivity in a rhythmic inhibitory circuit using Granger causality Tilman Kispersky, Gabrielle J Gutierrez, Eve Marder Neural Systems & Circuits 2011, 1:9 (25 May 2011) Abstract \| Full text \| PDF \| Editor’s summary Granger causality is a useful analysis in the context of inhibitory coupling, but the relationship between GC results and actual synaptic strength becomes more complicated when the postsynaptic neurons have more complex intrinsic membrane properties.
	34.	Comment The blue marble Gregory A Petsko Genome Biology 2011, 12:112 (28 April 2011) Full text \| PDF \| PubMed \| Editor’s summary A picture speaks a thousand words.
	35.	Comment The walking dead Gregory A Petsko Genome Biology 2011, 12:108 (31 March 2011) Full text \| PDF \| PubMed \| Editor’s summary Creationism, academic freedom and funding: keeping the zombie out of science.
	36.	Comment There is a sanity clause Gregory A Petsko Genome Biology 2011, 12:105 (25 February 2011) Full text \| PDF \| PubMed \| Editor’s summary Supply versus demand part II: will funding basic research lead to medical advances?
	37.	Comment Preserving some sanity Gregory A Petsko Genome Biology 2011, 12:102 (31 January 2011) Full text \| PDF \| PubMed \| Editor’s summary Supply versus demand: can the focus on translational medicine deliver?
	38.	Research The effect of time of onset on community preferences for health states: an exploratory study Eve Wittenberg Health and Quality of Life Outcomes 2011, 9:6 (20 January 2011) Abstract \| Full text \| PDF \| PubMed
	39.	Comment The long and the short of it Gregory A Petsko Genome Biology 2010, 11:145 (23 December 2010) Full text \| PDF \| PubMed \| Editor’s summary An end of year assessment of potential scientific investments.
	40.	Comment Every dog has his day in court Gregory A Petsko Genome Biology 2010, 11:139 (30 November 2010) Full text \| PDF \| PubMed \| Editor’s summary The dog days of stem cell funding.
	41.	Comment A Faustian bargain Gregory A Petsko Genome Biology 2010, 11:138 (31 October 2010) Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary An open letter to George M Philip, President of the State University of New York At Albany.
	42.	Comment Shadows on the wall Gregory A Petsko Genome Biology 2010, 11:136 (23 September 2010) Full text \| PDF \| PubMed \| Editor’s summary Skepticism is healthy and the toppling of scientific paradigms shouldn’t be feared.
	43.	Comment The past is a foreign country Gregory A Petsko Genome Biology 2010, 11:131 (27 August 2010) Full text \| PDF \| Editor’s summary The scientific worldview of someone starting graduate school today is very different from that of previous generations.
	44.	Research article Condensation oscillations in the peptidization of phenylglycine Mieczysław Sajewicz, Monika Gontarska, Dorota Kronenbach, Marcin Leda, Teresa Kowalska, Irving R Epstein Journal of Systems Chemistry 2010, 1:7 (18 August 2010) Abstract \| Full text \| PDF \| Graphical abstract
	45.	Erratum Correction to "Fixed Points of Maps of a Nonaspherical Wedge" Seungwon Kim, RobertF Brown, Adam Ericksen, Nirattaya Khamsemanan, Keith Merrill Fixed Point Theory and Applications 2010, 2010:820265 (8 August 2010) Abstract \| Full text \| PDF
	46.	Comment When the pie is too small Gregory A Petsko Genome Biology 2010, 11:127 (30 July 2010) Full text \| PDF \| PubMed \| Editor’s summary The NIH science funding pie has many mouths to feed; can a little go a long way?
	47.	Comment Hand-made biology Gregory A Petsko Genome Biology 2010, 11:124 (30 June 2010) Full text \| PDF \| PubMed \| Editor’s summary The genomics era Shelley, Craig Venter, has refocused attention on synthetic biology by creating a bacterium.
	48.	Comment When failure should be the option Gregory A Petsko BMC Biology 2010, 8:61 (21 May 2010) Full text \| PDF \| PubMed \| Editor’s summary Most clinical trials for new drugs fail Phase II trials for efficacy. Gregory Petsko argues that such failures are a crucial resource for accelerating the development of new drugs for other targets.
	49.	Comment And they said it wouldn't last... Gregory A Petsko Genome Biology 2010, 11:121 (5 May 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary In the 10 years that Genome Biology has been published the scientific changes have been amazing, as have the changes in the culture of science.
	50.	Comment The devil's in the details Gregory A Petsko Genome Biology 2010, 11:117 (30 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The Cures Acceleration Network brought in by the US Health Care Reform Bill looks good but could take funding from other research.