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	51.	Nano Express DNA-directed immobilization of horseradish peroxidase onto porous SiO₂ optical transducers Giorgi Shtenberg, Naama Massad-Ivanir, Sinem Engin, Michal Sharon, Ljiljana Fruk, Ester Segal Nanoscale Research Letters 2012, 7:443 (8 August 2012) Abstract \| Full text \| PDF \| PubMed
	52.	Research Comparative analysis indicates regulatory neofunctionalization of yeast duplicates Itay Tirosh, Naama Barkai Genome Biology 2007, 8:R50 (5 April 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Comparison of the expression profiles of S. cerevisiae duplicate pairs with that of their pre-duplication orthologs in C. albicans identified a class of genes that may present cases of regulatory neofunctionalization.
	53.	Research article How neurons migrate: a dynamic in-silico model of neuronal migration in the developing cortex Yaki Setty, Chih-Chun Chen, Maria Secrier, Nikita Skoblov, Dimitrios Kalamatianos, Stephen Emmott BMC Systems Biology 2011, 5:154 (30 September 2011) Abstract \| Full text \| PDF \| PubMed
	54.	Research article Diversification of Quiescin sulfhydryl oxidase in a preserved framework for redox relay Keren Limor-Waisberg, Shifra Ben-Dor, Deborah Fass BMC Evolutionary Biology 2013, 13:70 (19 March 2013) Abstract \| Full text \| PDF \| PubMed
	55.	Research A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs Reut Shalgi, Michal Lapidot, Ron Shamir, Yitzhak Pilpel Genome Biology 2005, 6:R86 (30 September 2005) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary By analyzing 3' UTR sequences and mRNA decay profiles in yeast, 53 sequence motifs have been identified that may be implicated in stabilization or destabilization of mRNA.
	56.	Research Modulation of the transcription regulatory program in yeast cells committed to sporulation Gilgi Friedlander, Daphna Joseph-Strauss, Miri Carmi, Drora Zenvirth, Giora Simchen, Naama Barkai Genome Biology 2006, 7:R20 (8 March 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Analysis of the gene expression program in yeast cells suggests that commitment to sporulation involves an active modulation of the gene expression program.
	57.	Correspondence *Answer to Wang and Luo, "Polyploidization increases meiotic recombination frequency in Arabidopsis: a close look at statistical modelling and data analysis"* Ales Pecinka, Avraham Levy, Ortrun Mittelsten Scheid BMC Biology 2012, 10:31 (18 April 2012) Abstract \| Full text \| PDF \| PubMed
	58.	Research article The evolving doublecortin (DCX) superfamily Orly Reiner, Frédéric M Coquelle, Bastian Peter, Talia Levy, Anna Kaplan, Tamar Sapir, Irit Orr, Naama Barkai, Gregor Eichele, Sven Bergmann BMC Genomics 2006, 7:188 (26 July 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	59.	Research article Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes Amit Zeisel, Amnon Amir, Wolfgang J Köstler, Eytan Domany BMC Bioinformatics 2010, 11:400 (27 July 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	60.	Research The society of genes: networks of functional links between genes from comparative genomics Itai Yanai, Charles DeLisi Genome Biology 2002, 3:research0064-research0064.12 (25 October 2002) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Comparative genomics provides at least three methods for identifying functional links between genes: examination of phylogenetic distributions, analysis of conserved proximity and observations of fusions of genes into a multidomain gene in another organism. We show that the functional networks obtained by applying these methods have different topologies and that the information they provide is largely additive. In particular, the combined networks of functional links contain an average of 57% of an organism's complete genetic complement, uncover substantial portions of known pathways, and suggest the function of previously unannotated genes. In addition, the combined networks are qualitatively different from the networks obtained using individual methods.
	61.	Research article Balancing speed and accuracy of polyclonal T cell activation: a role for extracellular feedback Yonatan Savir, Nir Waysbort, Yaron E Antebi, Tsvi Tlusty, Nir Friedman BMC Systems Biology 2012, 6:111 (27 August 2012) Abstract \| Full text \| PDF \| PubMed
	62.	Research article Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes Paz Polak, Eytan Domany BMC Genomics 2006, 7:133 (1 June 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Alu repeat elements are common upstream of transcription start sites and contain putative binding sites for transcription factors linked to development, evidence for evolution utilizing transposable elements to insert novel binding sites into promoters.
	63.	Research FSH regulates acetycholine production by ovarian granulosa cells Artur Mayerhofer, Lars Kunz, Annette Krieger, Becky Proskocil, Eliot Spindel, Abraham Amsterdam, Gregory A Dissen, Sergio R Ojeda, Ignaz Wessler Reproductive Biology and Endocrinology 2006, 4:37 (17 July 2006) Abstract \| Full text \| PDF \| PubMed
	64.	Research Ancient genomic architecture for mammalian olfactory receptor clusters Ronny Aloni, Tsviya Olender, Doron Lancet Genome Biology 2006, 7:R88 (1 October 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A new tool for genome-wide definition of genomic gene clusters conserved in multiple species was applied to olfactory receptors in five mammals, demonstrating that most mammalian olfactory receptor clusters have a common ancestry.
	65.	Research article *Genetic load and transgenic mitigating genes in transgenic Brassica rapa* (field mustard) × Brassica napus (oilseed rape) hybrid populations** Christy W Rose, Reginald J Millwood, Hong S Moon, Murali R Rao, Matthew D Halfhill, Paul L Raymer, Suzanne I Warwick, Hani Al-Ahmad, Jonathan Gressel, C Neal Stewart BMC Biotechnology 2009, 9:93 (31 October 2009) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Brassica rapa (weed) x Brassica napus (crop) transgenic hybrids are less fit than B. rapa in competitive conditions, with crop alleles acting as a negative genetic load opposing transgene introgression, while a mitigating transgene is soon lost from hybrids.
	66.	Research article Coding limits on the number of transcription factors Shalev Itzkovitz, Tsvi Tlusty, Uri Alon BMC Genomics 2006, 7:239 (19 September 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	67.	Research Live sequence charts to model medical information Eric Aslakson, Smadar Szekely, Suzanne D Vernon, Lucinda Bateman, Jan Baumbach, Yaki Setty Theoretical Biology and Medical Modelling 2012, 9:22 (15 June 2012) Abstract \| Full text \| PDF \| PubMed
	68.	Research article Robust Control of PEP Formation Rate in the Carbon Fixation Pathway of C₄Plants by a Bi-functional Enzyme Yuval Hart, Avraham E Mayo, Ron Milo, Uri Alon BMC Systems Biology 2011, 5:171 (24 October 2011) Abstract \| Full text \| PDF \| PubMed \| 1 comment
	69.	Research article *Search for computational modules in the C. elegans* brain** Markus Reigl, Uri Alon, Dmitri B Chklovskii BMC Biology 2004, 2:25 (2 December 2004) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Over-represented patterns of inter-connectivity in the C. elegans nervous system are candidates for computational modules that perform stereotypical functions.
	70.	Software Novel definition files for human GeneChips based on GeneAnnot Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Danieli, Silvio Bicciato BMC Bioinformatics 2007, 8:446 (15 November 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	71.	Database Expoldb: expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats Vineet K Sharma, Anu Sharma, Naveen Kumar, Mamta Khandelwal, Kiran Mandapati, Shirley Horn-Saban, Liora Strichman-Almashanu, Doron Lancet, Samir K Brahmachari, Srinivasan Ramachandran BMC Genomics 2006, 7:258 (13 October 2006) Abstract \| Full text \| PDF \| PubMed \| 1 comment
	72.	Research article Environmental variability and modularity of bacterial metabolic networks Merav Parter, Nadav Kashtan, Uri Alon BMC Evolutionary Biology 2007, 7:169 (23 September 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	73.	Research article Discovering local patterns of co - evolution: computational aspects and biological examples Tamir Tuller, Yifat Felder, Martin Kupiec BMC Bioinformatics 2010, 11:43 (22 January 2010) Abstract \| Full text \| PDF \| PubMed
	74.	Research article Teratogen-induced alterations in microRNA-34, microRNA-125b and microRNA-155 expression: correlation with embryonic p53 genotype and limb phenotype Keren Gueta, Natali Molotski, Natalie Gerchikov, Eyal Mor, Shoshana Savion, Amos Fein, Vladimir Toder, Noam Shomron, Arkady Torchinsky BMC Developmental Biology 2010, 10:20 (21 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	75.	Genome databases In-silico human genomics with GeneCards Gil Stelzer, Irina Dalah, Tsippi Stein, Yigeal Satanower, Naomi Rosen, Noam Nativ, Danit Oz-Levi, Tsviya Olender, Frida Belinky, Iris Bahir, Hagit Krug, Paul Perco, Bernd Mayer, Eugene Kolker, Marilyn Safran, Doron Lancet Human Genomics 2011, 5:709-717 (1 October 2011) Abstract \| Full text \| PDF