DNA-directed immobilization of horseradish peroxidase onto porous SiO 2 optical transducers
Nanoscale Research Letters 2012, 7:443 (8 August 2012)
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
Genome Biology 2007, 8:R50 (5 April 2007)
Comparison of the expression profiles of
S. cerevisiae duplicate pairs with that of their pre-duplication orthologs in C. albicans identified a class of genes that may present cases of regulatory neofunctionalization.
How neurons migrate: a dynamic in-silico model of neuronal migration in the developing cortex
BMC Systems Biology 2011, 5:154 (30 September 2011)
Diversification of Quiescin sulfhydryl oxidase in a preserved framework for redox relay
BMC Evolutionary Biology 2013, 13:70 (19 March 2013)
A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs
Genome Biology 2005, 6:R86 (30 September 2005)
By analyzing 3' UTR sequences and mRNA decay profiles in yeast, 53 sequence motifs have been identified that may be implicated in stabilization or destabilization of mRNA.
Modulation of the transcription regulatory program in yeast cells committed to sporulation
Genome Biology 2006, 7:R20 (8 March 2006)
Analysis of the gene expression program in yeast cells suggests that commitment to sporulation involves an active modulation of the gene expression program.
Answer to Wang and Luo, "Polyploidization increases meiotic recombination frequency in Arabidopsis: a close look at statistical modelling and data analysis"
BMC Biology 2012, 10:31 (18 April 2012)
The evolving doublecortin (DCX) superfamily
BMC Genomics 2006, 7:188 (26 July 2006)
Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes
BMC Bioinformatics 2010, 11:400 (27 July 2010)
The society of genes: networks of functional links between genes from comparative genomics
Genome Biology 2002, 3:research0064-research0064.12 (25 October 2002)
Comparative genomics provides at least three methods for identifying functional links between genes: examination of phylogenetic distributions, analysis of conserved proximity and observations of fusions of genes into a multidomain gene in another organism. We show that the functional networks obtained by applying these methods have different topologies and that the information they provide is largely additive. In particular, the combined networks of functional links contain an average of 57% of an organism's complete genetic complement, uncover substantial portions of known pathways, and suggest the function of previously unannotated genes. In addition, the combined networks are qualitatively different from the networks obtained using individual methods.
Balancing speed and accuracy of polyclonal T cell activation: a role for extracellular feedback
BMC Systems Biology 2012, 6:111 (27 August 2012)
Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
BMC Genomics 2006, 7:133 (1 June 2006)
Alu repeat elements are common upstream of transcription start sites and contain putative binding sites for transcription factors linked to development, evidence for evolution utilizing transposable elements to insert novel binding sites into promoters.
FSH regulates acetycholine production by ovarian granulosa cells
Reproductive Biology and Endocrinology 2006, 4:37 (17 July 2006)
Ancient genomic architecture for mammalian olfactory receptor clusters
Genome Biology 2006, 7:R88 (1 October 2006)
A new tool for genome-wide definition of genomic gene clusters conserved in multiple species was applied to olfactory receptors in five mammals, demonstrating that most mammalian olfactory receptor clusters have a common ancestry.
Genetic load and transgenic mitigating genes in transgenic Brassica rapa (field mustard) × Brassica napus (oilseed rape) hybrid populations
BMC Biotechnology 2009, 9:93 (31 October 2009)
Brassica rapa (weed) x Brassica napus (crop) transgenic hybrids are less fit than B. rapa in competitive conditions, with crop alleles acting as a negative genetic load opposing transgene introgression, while a mitigating transgene is soon lost from hybrids.
Coding limits on the number of transcription factors
BMC Genomics 2006, 7:239 (19 September 2006)
Live sequence charts to model medical information
Theoretical Biology and Medical Modelling 2012, 9:22 (15 June 2012)
Robust Control of PEP Formation Rate in the Carbon Fixation Pathway of C 4 Plants by a Bi-functional Enzyme
BMC Systems Biology 2011, 5:171 (24 October 2011)
Search for computational modules in the C. elegans brain
BMC Biology 2004, 2:25 (2 December 2004)
Over-represented patterns of inter-connectivity in the C. elegans nervous system are candidates for computational modules that perform stereotypical functions.
Novel definition files for human GeneChips based on GeneAnnot
BMC Bioinformatics 2007, 8:446 (15 November 2007)
Expoldb: expression linked polymorphism data base with inbuilt tools for analysis of expression and simple repeats
BMC Genomics 2006, 7:258 (13 October 2006)
Environmental variability and modularity of bacterial metabolic networks
BMC Evolutionary Biology 2007, 7:169 (23 September 2007)
Discovering local patterns of co - evolution: computational aspects and biological examples
BMC Bioinformatics 2010, 11:43 (22 January 2010)
Teratogen-induced alterations in microRNA-34, microRNA-125b and microRNA-155 expression: correlation with embryonic p53 genotype and limb phenotype
BMC Developmental Biology 2010, 10:20 (21 February 2010)
In-silico human genomics with GeneCards
Human Genomics 2011, 5:709-717 (1 October 2011)