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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at MDC Berlin (Helmholz Consortium)

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	1.	Research article Short tandem repeats in the inhibitory domain of the mineralocorticoid receptor: prediction of a beta-solenoid structure Metaxia Vlassi, Katharina Brauns, Miguel A Andrade-Navarro BMC Structural Biology 2013, 13:17 (2 October 2013) Abstract \| Provisional PDF
	2.	Poster presentation Receptor guanylyl cyclase B-mediated cGMP signalling controls axon bifurcation of cranial sensory ganglion neurons at the embryonic hindbrain Gohar Ter-Avetisyan, Fritz G Rathjen, Hannes Schmidt BMC Pharmacology and Toxicology 2013, 14(Suppl 1):P71 (29 August 2013) Full text \| PDF
	3.	Method Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits Molly Megraw, Sayan Mukherjee, Uwe Ohler Genome Biology 2013, 14:R85 (23 August 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary A new, rigorous algorithm for the generation of null models for identification of over-represented circuits in large networks
	4.	Research Utilization of TREC and KREC quantification for the monitoring of early T- and B-cell neogenesis in adult patients after allogeneic hematopoietic stem cell transplantation Angela Mensen, Christoph Ochs, Andrea Stroux, Friedrich Wittenbecher, Martin Szyska, Luisa Imberti, Simon Fillatreau, Lutz Uharek, Renate Arnold, Bernd Dörken, Andreas Thiel, Carmen Scheibenbogen, Il-Kang Na Journal of Translational Medicine 2013, 11:188 (14 August 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research article A systematic evaluation of hybridization-based mouse exome capture system Qingsong Gao, Wei Sun, Xintian You, Sebastian Froehler, Wei Chen BMC Genomics 2013, 14:492 (21 July 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Methodology article CELDA – an ontology for the comprehensive representation of cells in complex systems Stefanie Seltmann, Harald Stachelscheid, Alexander Damaschun, Ludger Jansen, Fritz Lekschas, Jean-Fred Fontaine, Throng Nghia Nguyen-Dobinsky, Ulf Leser, Andreas Kurtz BMC Bioinformatics 2013, 14:228 (17 July 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Research Myocardial T₁ and T₂ mapping at 3 T: reference values, influencing factors and implications Florian von Knobelsdorff-Brenkenhoff, Marcel Prothmann, Matthias A Dieringer, Ralf Wassmuth, Andreas Greiser, Carsten Schwenke, Thoralf Niendorf, Jeanette Schulz-Menger Journal of Cardiovascular Magnetic Resonance 2013, 15:53 (18 June 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Research Regulation of DNA transposition by CpG methylation and chromatin structure in human cells Tobias Jursch, Csaba Miskey, Zsuzsanna Izsvák, Zoltán Ivics Mobile DNA 2013, 4:15 (15 May 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Methodology article Using cited references to improve the retrieval of related biomedical documents Francisco M Ortuño, Ignacio Rojas, Miguel A Andrade-Navarro, Jean-Fred Fontaine BMC Bioinformatics 2013, 14:113 (27 March 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Research article Wdr66 is a novel marker for risk stratification and involved in epithelial-mesenchymal transition of esophageal squamous cell carcinoma Qing Wang, Chenming Ma, Wolfgang Kemmner BMC Cancer 2013, 13:137 (21 March 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Correction Correction: Reliable transgene-independent method for determining sleeping beauty transposon copy numbers Orsolya Kolacsek, Virág Krízsik, Anita Schamberger, Zsuzsa Erdei, Ágota Apáti, György Várady, Lajos Mátés, Zsuzsanna Izsvák, Zoltán Ivics, Balázs Sarkadi, Tamás I Orbán Mobile DNA 2013, 4:11 (15 March 2013) Abstract \| Full text \| PDF \| PubMed
	12.	Research Assessment of the right ventricle with cardiovascular magnetic resonance at 7 Tesla Florian von Knobelsdorff-Brenkenhoff, Valeriy Tkachenko, Lukas Winter, Jan Rieger, Christof Thalhammer, Fabian Hezel, Andreas Graessl, Matthias A Dieringer, Thoralf Niendorf, Jeanette Schulz-Menger Journal of Cardiovascular Magnetic Resonance 2013, 15:23 (14 March 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Short Report Cell division promotes efficient retrotransposition in a stable L1 reporter cell line Yi Xie, Lajos Mates, Zoltán Ivics, Zsuzsanna Izsvák, Sandra L Martin, Wenfeng An Mobile DNA 2013, 4:10 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Review Epigallocatechin-3-gallate: a useful, effective and safe clinical approach for targeted prevention and individualised treatment of neurological diseases? Anja Mähler, Silvia Mandel, Mario Lorenz, Urs Ruegg, Erich E Wanker, Michael Boschmann, Friedemann Paul EPMA Journal 2013, 4:5 (18 February 2013) Abstract \| Full text \| PDF \| PubMed
	15.	Workshop presentation *High spatial and temporal myocardial CINE T2 mapping at 7.0 T: a feasibility study** F Hezel, C Thalhammer, S Waiczies, J Schulz-Menger, T Niendorf Journal of Cardiovascular Magnetic Resonance 2013, 15(Suppl 1):W29 (30 January 2013) Full text \| PDF
	16.	Hypothesis Closing the circle of germline and stem cells: the Primordial Stem Cell hypothesis Jordi Solana EvoDevo 2013, 4:2 (8 January 2013) Abstract \| Full text \| PDF \| PubMed
	17.	Research highlight Mining the literature: new methods to exploit keyword profiles Miguel A Andrade-Navarro Genome Medicine 2012, 4:81 (30 October 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Miguel Andrade-Navarro highlights two recent publications by Wasserman et al. demonstrating that keyword profiles can be used to detect new associations between genes and inherited diseases.
	18.	Research Peer2ref: a peer-reviewer finding web tool that uses author disambiguation Miguel A Andrade-Navarro, Gareth A Palidwor, Carol Perez-Iratxeta BioData Mining 2012, 5:14 (7 September 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A new web tool which uses author disambiguation and usage based keywords is shown to enhance the automated search of peer reviewers, particularly those who operate in narrow areas of research.
	19.	Research article *Conserved cis-regulatory regions in a large genomic landscape control SHH and BMP-regulated Gremlin1* expression in mouse limb buds** Aimée Zuniga, Frédéric Laurent, Javier Lopez-Rios, Christian Klasen, Nicolas Matt, Rolf Zeller BMC Developmental Biology 2012, 12:23 (13 August 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Distant cis-regulatory regions scattered through a larger genome region control the highly dynamic expression of Gremlin1 (GREM1), a Bone Morphogenetic Protein (BMP) antagonist, which is key to normal progression of mouse limb bud development.
	20.	Research SNPs in the coding region of the metastasis-inducing gene MACC1 and clinical outcome in colorectal cancer Felicitas Schmid, Susen Burock, Konrad Klockmeier, Peter M Schlag, Ulrike Stein Molecular Cancer 2012, 11:49 (29 July 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Multi-compartmental modeling of SORLA’s influence on amyloidogenic processing in Alzheimer’s disease Angelyn Lao, Vanessa Schmidt, Yvonne Schmitz, Thomas E Willnow, Olaf Wolkenhauer BMC Systems Biology 2012, 6:74 (22 June 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research article Divergent gene expression in the conserved dauer stage of the nematodes Pristionchus pacificus and Caenorhabditis elegans Amit Sinha, Ralf J Sommer, Christoph Dieterich BMC Genomics 2012, 13:254 (19 June 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research article MicroRNA-143 down-regulates Hexokinase 2 in colon cancer cells Lea H Gregersen, Anders Jacobsen, Lisa B Frankel, Jiayu Wen, Anders Krogh, Anders H Lund BMC Cancer 2012, 12:232 (12 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	24.	Research article Proteome dynamics and early salt stress response of the photosynthetic organism Chlamydomonas reinhardtii Guido Mastrobuoni, Susann Irgang, Matthias Pietzke, Heike E Aßmus, Markus Wenzel, Waltraud X Schulze, Stefan Kempa BMC Genomics 2012, 13:215 (31 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25.	Research Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNA-seq, RNA interference and irradiation approach Jordi Solana, Damian Kao, Yuliana Mihaylova, Farah Jaber-Hijazi, Sunir Malla, Ray Wilson, Aziz Aboobaker Genome Biology 2012, 13:R19 (22 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Planarian stem cells are ablated by RNAi against histone 2B and the neoblast-specific transcriptome is determined