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Research staff and students at FZJ Julich (Helmholtz Consortium):

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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at FZJ Julich (Helmholtz Consortium)

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	1.	Research A data infrastructure reference model with applications: towards realization of a ScienceTube vision with a data replication service Morris Riedel, Peter Wittenburg, Johannes Reetz, Mark van de Sanden, Jedrzej Rybicki, Benedikt von St Vieth, Giuseppe Fiameni, Giacomo Mariani, Alberto Michelini, Claudio Cacciari, Willem Elbers, Daan Broeder, Robert Verkerk, Elena Erastova, Michael Lautenschlaeger, Reinhard Budig, Hannes Thielmann, Peter Coveney, Stefan Zasada, Ali Haidar, Otto Buechner, Cristina Manzano, Shiraz Memon, Shahbaz Memon, Heikki Helin, Jari Suhonen, Damien Lecarpentier, Kimmo Koski, Thomas Lippert Journal of Internet Services and Applications 2013, 4:1 (30 January 2013) Abstract \| Full text \| PDF
	2.	Methodology *Synchronous high-resolution phenotyping of leaf and root growth in Nicotiana tabacum* over 24-h periods with GROWMAP-plant** Tom Ruts, Shizue Matsubara, Achim Walter Plant Methods 2013, 9:2 (23 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary GROWMAP-plant is an elegant new method that allows growth processes to be monitored simultaneously in the above and below-ground parts of the plant over 24 h periods. The method is validated by using it to demonstrate the differences between roots and leaves in the sensitivity of their growth patterns to environmental perturbation.
	3.	Methodology article A standard numbering scheme for thiamine diphosphate-dependent decarboxylases Constantin Vogel, Michael Widmann, Martina Pohl, Jürgen Pleiss BMC Biochemistry 2012, 13:24 (17 November 2012) Abstract \| Full text \| PDF \| PubMed
	4.	Research An automated workflow for enhancing microbial bioprocess optimization on a novel microbioreactor platform Peter Rohe, Deepak Venkanna, Britta Kleine, Roland Freudl, Marco Oldiges Microbial Cell Factories 2012, 11:144 (31 October 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	5.	Research article Fine motor skills in adult Tourette patients are task-dependent Irene Neuner, Jorge Arrubla, Corinna Ehlen, Hildegard Janouschek, Carlos Nordt, Bruno Fimm, Frank Schneider, N Shah, Wolfram Kawohl BMC Neurology 2012, 12:120 (11 October 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Research Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms Nicole Paczia, Anke Nilgen, Tobias Lehmann, Jochem Gätgens, Wolfgang Wiechert, Stephan Noack Microbial Cell Factories 2012, 11:122 (11 September 2012) Abstract \| Full text \| PDF \| PubMed
	7.	Poster presentation Taming the model zoo: a unified view on correlations in recurrent networks Dmytro Grytskyy, Moritz Helias, Tom Tetzlaff, Markus Diesmann BMC Neuroscience 2012, 13(Suppl 1):P147 (16 July 2012) Full text \| PDF
	8.	Poster presentation Comparing the spatio-temporal organization of joint spiking and local field potential oscillations in motor cortex Michael Denker, Lyuba Zehl, Thomas Brochier, Alexa Riehle, Sonja Grün BMC Neuroscience 2012, 13(Suppl 1):P127 (16 July 2012) Full text \| PDF
	9.	Poster presentation Gamma band LFP in mouse barrel cortex is coupled to respiratory rhythm Junji Ito, Snigdha Roy, Ying Cao, Sonja Grün, Detlef Heck BMC Neuroscience 2012, 13(Suppl 1):P123 (16 July 2012) Full text \| PDF
	10.	Research Linking the Tinnitus Questionnaire and the subjective Clinical Global Impression: Which differences are clinically important? Ilya Adamchic, Peter Tass, Berthold Langguth, Christian Hauptmann, Michael Koller, Martin Schecklmann, Florian Zeman, Michael Landgrebe Health and Quality of Life Outcomes 2012, 10:79 (10 July 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	11.	Research article A minimal ligand binding pocket within a network of correlated mutations identified by multiple sequence and structural analysis of G protein coupled receptors Subhodeep Moitra, Kalyan C Tirupula, Judith Klein-Seetharaman, Christopher Langmead BMC Biophysics 2012, 5:13 (29 June 2012) Abstract \| Full text \| PDF \| PubMed
	12.	Method A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level Stephan Binder, Georg Schendzielorz, Norma Stäbler, Karin Krumbach, Kristina Hoffmann, Michael Bott, Lothar Eggeling Genome Biology 2012, 13:R40 (28 May 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A novel high-throughput method that uses in vivo metabolite sensors to identify bacterial metabolite producers
	13.	Methodology article Real-time determination of intracellular oxygen in bacteria using a genetically encoded FRET-based biosensor Janko Potzkei, Martin Kunze, Thomas Drepper, Thomas Gensch, Karl-Erich Jaeger, Jochen Büchs BMC Biology 2012, 10:28 (22 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	14.	Research article Spindles and active vortices in a model of confined filament-motor mixtures David A Head, WJ Briels, Gerhard Gompper BMC Biophysics 2011, 4:18 (16 November 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A discrete filament-motor protein model of subcellular microtubule self-assembly in fission yeast spontaneously generates a number of steady states, including spindles, nematics, and asters, highlighting potential mechanisms for self-organisation in filaments
	15.	Research *Growth independent rhamnolipid production from glucose using the non-pathogenic Pseudomonas putida* KT2440** Andreas Wittgens, Till Tiso, Torsten T Arndt, Pamela Wenk, Johannes Hemmerich, Carsten Müller, Rolf Wichmann, Benjamin Küpper, Michaela Zwick, Susanne Wilhelm, Rudolf Hausmann, Christoph Syldatk, Frank Rosenau, Lars M Blank Microbial Cell Factories 2011, 10:80 (17 October 2011) Abstract \| Full text \| PDF \| PubMed
	16.	Poster presentation Robustness vs. flexibility: how do external inputs shape the activity in a data-based layered cortical network model? Tobias C Potjans, Markus Diesmann BMC Neuroscience 2011, 12(Suppl 1):P74 (18 July 2011) Full text \| PDF
	17.	Nano Express Theory and simulation of photogeneration and transport in Si-SiO_xsuperlattice absorbers Urs Aeberhard Nanoscale Research Letters 2011, 6:242 (21 March 2011) Abstract \| Full text \| PDF \| PubMed
	18.	Research article Mechanism of acetaldehyde-induced deactivation of microbial lipases Benjamin Franken, Thorsten Eggert, Karl E Jaeger, Martina Pohl BMC Biochemistry 2011, 12:10 (22 February 2011) Abstract \| Full text \| PDF \| PubMed
	19.	Research Dynamics of neuroinflammation in the macrosphere model of arterio-arterial embolic focal ischemia: an approximation to human stroke patterns Maureen Walberer, Maria A Rueger, Marie-Lune Simard, Beata Emig, Sebastian Jander, Gereon R Fink, Michael Schroeter Experimental & Translational Stroke Medicine 2010, 2:22 (20 December 2010) Abstract \| Full text \| PDF \| PubMed
	20.	Research Physiological relation between respiration activity and heterologous expression of selected benzoylformate decarboxylase variants in Escherichia coli Thomas G Palmen, Jens Nieveler, Bettina Frölich, Wiltrud Treffenfeldt, Martina Pohl, Jochen Büchs Microbial Cell Factories 2010, 9:76 (19 October 2010) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Effects of aversive odour presentation on inhibitory control in the Stroop colour-word interference task Andreas Finkelmeyer, Thilo Kellermann, Daniela Bude, Thomas Nießen, Michael Schwenzer, Klaus Mathiak, Martina Reske BMC Neuroscience 2010, 11:131 (18 October 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Presenting an emotionally negative odor to healthy human subjects during a Stroop color word interference task decreased reaction times for incongruent stimuli, whereas a neutral odor had no effect on task performance.
	22.	Research The effects of a DTNBP1 gene variant on attention networks: an fMRI study Markus Thimm, Axel Krug, Thilo Kellermann, Valentin Markov, Sören Krach, Andreas Jansen, Klaus Zerres, Thomas Eggermann, Tony Stöcker, N Jon Shah, Markus M Nöthen, Marcella Rietschel, Tilo Kircher Behavioral and Brain Functions 2010, 6:54 (16 September 2010) Abstract \| Full text \| PDF \| PubMed
	23.	Research *The val¹⁵⁸met polymorphism of human catechol-O-methyltransferase (COMT) affects anterior cingulate cortex activation in response to painful laser stimulation* Arian Mobascher, Juergen Brinkmeyer, Holger Thiele, Mohammad R Toliat, Michael Steffens, Tracy Warbrick, Francesco Musso, Hans-Joerg Wittsack, Andreas Saleh, Alfons Schnitzler, Georg Winterer Molecular Pain 2010, 6:32 (31 May 2010) Abstract \| Full text \| PDF \| PubMed
	24.	Poster presentation Potential role of HIV-1 Nef and human M6B in HIV-associated neurological disorders Jessica Moetter, Silke Hoffmann, Esther Jonas, Dieter Willbold Retrovirology 2010, 7(Suppl 1):P18 (11 May 2010) Full text \| PDF
	25.	Research article *Depletion of the non-coding regulatory 6S RNA in E. coli* causes a surprising reduction in the expression of the translation machinery** Thomas Neusser, Tino Polen, René Geissen, Rolf Wagner BMC Genomics 2010, 11:165 (11 March 2010) Abstract \| Full text \| PDF \| PubMed