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101.

Methodology article   Open Access

Factors necessary to produce basoapical polarity in human glandular epithelium formed in conventional and high-throughput three-dimensional culture: example of the breast epithelium

Cedric Plachot, Lesley S Chaboub, Hibret A Adissu, Lei Wang, Albert Urazaev, Jennifer Sturgis, Elikplimi K Asem, Sophie A Lelièvre BMC Biology 2009, 7:77 (16 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A high throughput 3-D culture system succeeds in establishing glandular acini from a human mammary epithelial cell line, and demonstrates the importance of basal polarity-mediated signals and collagen IV in recapitulating apical polarity.

102.

Research article   Open Access

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut

Ervin D Nagy, Yufang Guo, Shunxue Tang, John E Bowers, Rebecca A Okashah, Christopher A Taylor, Dong Zhang, Sameer Khanal, Adam F Heesacker, Nelly Khalilian, Andrew D Farmer, Noelia Carrasquilla-Garcia, R Varma Penmetsa, Douglas Cook, H Thomas Stalker, Niels Nielsen, Peggy Ozias-Akins, Steven J Knapp BMC Genomics 2012, 13:469 (11 September 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

103.

Research   Open Access

Breast cancer subtyping from plasma proteins

Fan Zhang, Jake Y Chen BMC Medical Genomics 2013, 6(Suppl 1):S6 (23 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

104.

Study protocol   Open Access Highly Accessed

Connecting Health and Technology (CHAT): protocol of a randomized controlled trial to improve nutrition behaviours using mobile devices and tailored text messaging in young adults

Deborah A Kerr, Christina M Pollard, Peter Howat, Edward J Delp, Mark Pickering, Katherine R Kerr, Satvinder S Dhaliwal, Iain S Pratt, Janine Wright, Carol J Boushey BMC Public Health 2012, 12:477 (22 June 2012)

Abstract | Full text | PDF | PubMed

105.

Research article   Open Access Highly Accessed

Anticancer properties of propofol-docosahexaenoate and propofol-eicosapentaenoate on breast cancer cells

Rafat A Siddiqui, Mustapha Zerouga, Min Wu, Alicia Castillo, Kevin Harvey, Gary P Zaloga, William Stillwell Breast Cancer Research 2005, 7:R645-R654 (7 June 2005)

Abstract | Full text | PDF | PubMed | 1 comment |  Editor’s summary

Omega-3 fatty acids combined with propofol have potential as an anti-cancer drug by inhibiting cancer cell adhesion, reducing cell migration and inducing apoptosis.

106.

Research   Open Access Highly Accessed

Sex-specific expression of alternative transcripts in Drosophila

Lauren M McIntyre, Lisa M Bono, Anne Genissel, Rick Westerman, Damion Junk, Marina Telonis-Scott, Larry Harshman, Marta L Wayne, Artyom Kopp, Sergey V Nuzhdin Genome Biology 2006, 7:R79 (25 August 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A genome-wide microarray analysis of sex-specific expression of alternative transcripts in Drosophila shows sexual dimorphism in transcript abundance for 53% of the genes.

107.

Original article   Open Access

Biofuels, cropland expansion, and the extensive margin

Farzad Taheripour, Qianlai Zhuang, Wallace E Tyner, Xiaoliang Lu Energy, Sustainability and Society 2012, 2:25 (28 December 2012)

Abstract | Full text | PDF

108.

Research   Open Access

Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data

Ao Zhou, Marcus R Breese, Yangyang Hao, Howard J Edenberg, Lang Li, Todd C Skaar, Yunlong Liu BMC Genomics 2012, 13(Suppl 8):S10 (17 December 2012)

Abstract | Full text | PDF | PubMed

109.

Research article   Open Access

Application of 3D Zernike descriptors to shape-based ligand similarity searching

Vishwesh Venkatraman, Padmasini Chakravarthy, Daisuke Kihara Journal of Cheminformatics 2009, 1:19 (17 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | Graphical abstract

110.

Research article   Open Access Highly Accessed

Arabidopsis brassinosteroid biosynthetic mutant dwarf7-1 exhibits slower rates of cell division and shoot induction

Jinyeong Cheon, So-Young Park, Burkhard Schulz, Sunghwa Choe BMC Plant Biology 2010, 10:270 (9 December 2010)

Abstract | Full text | PDF | PubMed

111.

Proceedings   Open Access

HPD: an online integrated human pathway database enabling systems biology studies

Sudhir R Chowbina, Xiaogang Wu, Fan Zhang, Peter M Li, Ragini Pandey, Harini N Kasamsetty, Jake Y Chen BMC Bioinformatics 2009, 10(Suppl 11):S5 (8 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

112.

Commentary   Open Access

Targeting deforestation rates in climate change policy: a "Preservation Pathway" approach

Kevin R Gurney, Leigh Raymond Carbon Balance and Management 2008, 3:2 (3 March 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

113.

Research   Open Access Highly Accessed

Effects of consuming a high carbohydrate diet after eight weeks of exposure to a ketogenic diet

Mary Honors, Brandon M Davenport, Kimberly P Kinzig Nutrition & Metabolism 2009, 6:46 (19 November 2009)

Abstract | Full text | PDF | PubMed

114.

Research article   Open Access Highly Accessed

Effective inter-residue contact definitions for accurate protein fold recognition

Chao Yuan, Hao Chen, Daisuke Kihara BMC Bioinformatics 2012, 13:292 (9 November 2012)

Abstract | Full text | PDF | PubMed

115.

Research   Open Access

Involvement of insulin-degrading enzyme in the clearance of beta-amyloid at the blood-CSF barrier: Consequences of lead exposure

Mamta Behl, Yanshu Zhang, Wei Zheng Cerebrospinal Fluid Research 2009, 6:11 (11 September 2009)

Abstract | Full text | PDF | PubMed

116.

Research   Open Access

A statistical model-building perspective to identification of MS/MS spectra with PeptideProphet

Kelvin Ma, Olga Vitek, Alexey I Nesvizhskii BMC Bioinformatics 2012, 13(Suppl 16):S1 (5 November 2012)

Abstract | Full text | PDF | PubMed

117.

Research   Open Access

Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

Christopher J Oldfield, Jingwei Meng, Jack Y Yang, Mary Qu Yang, Vladimir N Uversky, A Keith Dunker BMC Genomics 2008, 9(Suppl 1):S1 (20 March 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

118.

Research article   Open Access Highly Accessed

Thermostability in endoglucanases is fold-specific

Ragothaman M Yennamalli, Andrew J Rader, Jeffrey D Wolt, Taner Z Sen BMC Structural Biology 2011, 11:10 (3 February 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

119.

Editorial   Open Access

Advanced Image Processing for Defense and Security Applications

ElizaYingzi Du, Robert Ives, Alan van Nevel, Jin-Hua She EURASIP Journal on Advances in Signal Processing 2010, 2010:432972 (9 March 2011)

Full text | PDF

120.

Research article   Open Access

1,25 dihydroxyvitamin D-mediated orchestration of anticancer, transcript-level effects in the immortalized, non-transformed prostate epithelial cell line, RWPE1

Pavlo L Kovalenko, Zhentao Zhang, Min Cui, Steve K Clinton, James C Fleet BMC Genomics 2010, 11:26 (13 January 2010)

Abstract | Full text | PDF | PubMed

121.

Research article   Open Access

Genome-wide differential gene expression in immortalized DF-1 chicken embryo fibroblast cell line

Byung-Whi Kong, Jeong Yoon Lee, Walter G Bottje, Kentu Lassiter, Jonghyuk Lee, Douglas N Foster BMC Genomics 2011, 12:571 (23 November 2011)

Abstract | Full text | PDF | PubMed

122.

Research   Open Access

Caste- and development-associated gene expression in a lower termite

Michael E Scharf, Dancia Wu-Scharf, Barry R Pittendrigh, Gary W Bennett Genome Biology 2003, 4:R62 (26 September 2003)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Social insects such as termites express dramatic polyphenism (the occurrence of multiple forms in a species on the basis of differential gene expression) both in association with caste differentiation and between castes after differentiation. We have used cDNA macroarrays to compare gene expression between polyphenic castes and intermediary developmental stages of the termite Reticulitermes flavipes.

123.

Research article   Open Access

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing

Jessica A Schlueter, Jer-Young Lin, Shannon D Schlueter, Iryna F Vasylenko-Sanders, Shweta Deshpande, Jing Yi, Majesta O'Bleness, Bruce A Roe, Rex T Nelson, Brian E Scheffler, Scott A Jackson, Randy C Shoemaker BMC Genomics 2007, 8:330 (19 September 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

124.

Research   Open Access

2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

Jack Y Yang, Andrzej Niemierko, Ruzena Bajcsy, Dong Xu, Brian D Athey, Aidong Zhang, Okan K Ersoy, Guo-zheng Li, Mark Borodovsky, Joe C Zhang, Hamid R Arabnia, Youping Deng, A Dunker, Yunlong Liu, Arif Ghafoor BMC Genomics 2010, 11(Suppl 3):I1 (1 December 2010)

Abstract | Full text | PDF | PubMed

125.

Research   Open Access

Large naturally-produced electric currents and voltage traverse damaged mammalian spinal cord

Mahvash Zuberi, Peishan Liu-Snyder, Aeraj ul Haque, David M Porterfield, Richard B Borgens Journal of Biological Engineering 2008, 2:17 (30 December 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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