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1.

Research article   Open Access

Reintroductions and genetic introgression from domestic pigs have shaped the genetic population structure of Northwest European wild boar

Daniel J Goedbloed, Pim van Hooft, Hendrik-Jan Megens, Katharina Langenbeck, Walburga Lutz, Richard PMA Crooijmans, Sip E van Wieren, Ron C Ydenberg, Herbert HT Prins BMC Genetics 2013, 14:43 (20 May 2013)

Abstract | Provisional PDF

2.

Systematic Review Protocol   Open Access

What is the influence on water quality in temperate eutrophic lakes of a reduction of planktivorous and benthivorous fish? A systematic review protocol

Claes Bernes, Stephen R Carpenter, Anna Gårdmark, Per Larsson, Lennart Persson, Christian Skov, Ellen Van Donk Environmental Evidence 2013, 2:9 (10 May 2013)

Abstract | Full text | PDF

3.

Research article   Open Access

Adapting the SLIM diabetes prevention intervention to a Dutch real-life setting: joint decision making by science and practice

Sophia C Jansen, Annemien Haveman-Nies, Geerke Duijzer, Josien Ter Beek, Gerrit J Hiddink, Edith JM Feskens BMC Public Health 2013, 13:457 (8 May 2013)

Abstract | Full text | PDF | PubMed

4.

Methodology   Open Access

An efficient flat-surface collar-free grafting method for Arabidopsis thaliana seedlings

Nayelli Marsch Martínez, John Franken, Karla L Gonzalez-Aguilera, Stefan de Folter, Gerco Angenent, Elena R Alvarez-Buylla Plant Methods 2013, 9:14 (4 May 2013)

Abstract | Provisional PDF | PubMed |  Editor’s summary

Grafting is an extremely important technique for the study of long distance signalling in plants. The authors describe substantial improvements to existing methodologies that both increase the success rate and the throughput of hypocotyl grafting in Arabidopsis.

5.

Research   Open Access

Transcription networks responsible for early regulation of Salmonella-induced inflammation in the jejunum of pigs

Marcel Hulst, Mari Smits, Stéphanie Vastenhouw, Agnes de Wit, Theo Niewold, Jan van der Meulen Journal of Inflammation 2013, 10:18 (17 April 2013)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access

Consumers’ intention to use health recommendation systems to receive personalized nutrition advice

Sonja Wendel, Benedict GC Dellaert, Amber Ronteltap, Hans CM van Trijp BMC Health Services Research 2013, 13:126 (4 April 2013)

Abstract | Full text | PDF | PubMed

7.

Software   Open Access Highly Accessed

MGcV: the microbial genomic context viewer for comparative genome analysis

Lex Overmars, Robert Kerkhoven, Roland J Siezen, Christof Francke BMC Genomics 2013, 14:209 (1 April 2013)

Abstract | Full text | PDF | PubMed

8.

Research   Open Access Highly Accessed

Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes

Yiannis AI Kourmpetis, Aalt DJ van Dijk, Cajo JF ter Braak Algorithms for Molecular Biology 2013, 8:10 (27 March 2013)

Abstract | Provisional PDF | PubMed

9.

Research article   Open Access

Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods

Jumamurat R Bayjanov, Marjo JC Starrenburg, Marijke R van der Sijde, Roland J Siezen, Sacha AFT van Hijum BMC Microbiology 2013, 13:68 (26 March 2013)

Abstract | Full text | PDF | PubMed

10.

Methodology article   Open Access

A qRT-PCR assay for the expression of all Mal d 1 isoallergen genes

Giulia Pagliarani, Roberta Paris, Paul Arens, Stefano Tartarini, Giampaolo Ricci, Marinus MJ Smulders, W Eric van de Weg BMC Plant Biology 2013, 13:51 (23 March 2013)

Abstract | Full text | PDF | PubMed | 1 comment

11.

Research article   Open Access

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

Anna Esteve-Codina, Yogesh Paudel, Luca Ferretti, Emanuele Raineri, Hendrik-Jan Megens, Luis Silió, María C Rodríguez, Martein AM Groenen, Sebastian E Ramos-Onsins, Miguel Pérez-Enciso BMC Genomics 2013, 14:148 (5 March 2013)

Abstract | Full text | PDF | PubMed

12.

Study protocol   Open Access Highly Accessed

Rationale and design of a randomized controlled trial of the effect of retinol and vitamin D supplementation on treatment in active pulmonary tuberculosis patients with diabetes

Qiuzhen Wang, Aiguo Ma, Ib Christian Bygbjerg, Xiuxia Han, Yufeng Liu, Shanliang Zhao, Jing Cai BMC Infectious Diseases 2013, 13:104 (26 February 2013)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access Highly Accessed

MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum

Sarah M Schmidt, Petra M Houterman, Ines Schreiver, Lisong Ma, Stefan Amyotte, Biju Chellappan, Sjef Boeren, Frank L W Takken, Martijn Rep BMC Genomics 2013, 14:119 (22 February 2013)

Abstract | Full text | PDF | PubMed

14.

Commentary   Open Access Highly Accessed

Predicting the evolution of antibiotic resistance

Martijn F Schenk, J Arjan GM de Visser BMC Biology 2013, 11:14 (22 February 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Commenting on research in BMC Evolutionary Biology, Arjan de Visser and Martijn Schenk discuss how two genetic properties, pleiotropy and epistasis, might help us to predict the evolution of antibiotic resistance.

15.

Research   Open Access

Fast probabilistic file fingerprinting for big data

Konstantin Tretyakov, Sven Laur, Geert Smant, Jaak Vilo, Pjotr Prins BMC Genomics 2013, 14(Suppl 2):S8 (15 February 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

16.

Review   Open Access Highly Accessed

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

Toshiaki Katayama, Mark D Wilkinson, Gos Micklem, Shuichi Kawashima, Atsuko Yamaguchi, Mitsuteru Nakao, Yasunori Yamamoto, Shinobu Okamoto, Kenta Oouchida, Hong-Woo Chun, Jan Aerts, Hammad Afzal, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Francois Belleau, Jerven Bolleman, Raoul JP Bonnal, Brad Chapman, Peter JA Cock, Tore Eriksson, Paul MK Gordon, Naohisa Goto, Kazuhiro Hayashi, Heiko Horn, Ryosuke Ishiwata, Eli Kaminuma, Arek Kasprzyk, Hideya Kawaji, Nobuhiro Kido et al. Journal of Biomedical Semantics 2013, 4:6 (11 February 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This meeting report from the 3rd DBCLS BioHackathon examines how Semantic Web technologies can improve the quality and accessibility of life science research data on the Web.

17.

Research article   Open Access

Genome-wide gene expression analysis of anguillid herpesvirus 1

Steven J van Beurden, Ben PH Peeters, Peter JM Rottier, Andrew J Davison, Marc Y Engelsma BMC Genomics 2013, 14:83 (6 February 2013)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access

Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data

Kristina M Hettne, André Boorsma, Dorien A M van Dartel, Jelle J Goeman, Esther de Jong, Aldert H Piersma, Rob H Stierum, Jos C Kleinjans, Jan A Kors BMC Medical Genomics 2013, 6:2 (29 January 2013)

Abstract | Full text | PDF | PubMed

19.

Research article   Open Access

Geographic parthenogenesis and plant-enemy interactions in the common dandelion

Koen JF Verhoeven, Arjen Biere BMC Evolutionary Biology 2013, 13:23 (28 January 2013)

Abstract | Full text | PDF | PubMed

20.

Research article   Open Access Highly Accessed

Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease

Lotta Nylund, Reetta Satokari, Janne Nikkilä, Mirjana Rajilić-Stojanović, Marko Kalliomäki, Erika Isolauri, Seppo Salminen, Willem M de Vos BMC Microbiology 2013, 13:12 (23 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Children with eczema harbour a greater diversity of microbes in the gut than those without, including an increased abundance of bacteria that are typically more common in adults, which may contribute to the perpetuation of the condition.

21.

Research   Open Access Highly Accessed

Geographic coincidence of increased malaria transmission hazard and vulnerability occurring at the periphery of two Tanzanian villages

Tanya L Russell, Dickson W Lwetoijera, Bart GJ Knols, Willem Takken, Gerry F Killeen, Louise A Kelly-Hope Malaria Journal 2013, 12:24 (18 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Malaria elimination necessitates an improved understanding of fine-scale geographic variations in transmission risk so that complementary vector control tools can be integrated into control programmes.

22.

Short report   Open Access Highly Accessed

Systemic distribution of different low pathogenic avian influenza (LPAI) viruses in chicken

Jacob Post, Eveline D de Geus, Lonneke Vervelde, Jan BWJ Cornelissen, Johanna MJ Rebel Virology Journal 2013, 10:23 (17 January 2013)

Abstract | Full text | PDF | PubMed

23.

Research article   Open Access

RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum

Chunzhao Zhao, Cees Waalwijk, Pierre J G M de Wit, Dingzhong Tang, Theo van der Lee BMC Genomics 2013, 14:21 (16 January 2013)

Abstract | Full text | PDF | PubMed

24.

Short report   Open Access

Anemia in relation to body mass index and waist circumference among chinese women

Yu Qin, Alida Melse-Boonstra, Xiaoqun Pan, Baojun Yuan, Yue Dai, Jinkou Zhao, Michael B Zimmermann, Frans J Kok, Minghao Zhou, Zumin Shi Nutrition Journal 2013, 12:10 (11 January 2013)

Abstract | Full text | PDF | PubMed

25.

Research   Open Access

Association between transmission rate and disease severity for Actinobacillus pleuropneumoniae infection in pigs

Tijs J Tobias, Annemarie Bouma, Angeline JJM Daemen, Jaap A Wagenaar, Arjan Stegeman, Don Klinkenberg Veterinary Research 2013, 44:2 (11 January 2013)

Abstract | Full text | PDF | PubMed

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