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1.

Research   Open Access

In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories

Evamaria Gruchattka, Oliver Hädicke, Steffen Klamt, Verena Schütz, Oliver Kayser Microbial Cell Factories 2013, 12:84 (23 September 2013)

Abstract | Provisional PDF | PubMed

2.

Research article   Open Access

Comparative genomics reveals distinct host-interacting traits of three major human-associated propionibacteria

Tim N Mak, Monika Schmid, Elzbieta Brzuszkiewicz, Guanghong Zeng, Rikke Meyer, Karen S Sfanos, Volker Brinkmann, Thomas F Meyer, Holger Brüggemann BMC Genomics 2013, 14:640 (22 September 2013)

Abstract | Full text | PDF | PubMed

3.

Research article   Open Access

Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins

Stefanie Mühlhausen, Martin Kollmar BMC Evolutionary Biology 2013, 13:202 (22 September 2013)

Abstract | Provisional PDF | PubMed

4.

Research article   Open Access

Novel aspects of glutamine synthetase (GS) regulation revealed by a detailed expression analysis of the entire GS gene family of Medicago truncatula under different physiological conditions

Ana R Seabra, Liliana S Silva, Helena G Carvalho BMC Plant Biology 2013, 13:137 (21 September 2013)

Abstract | Full text | PDF | PubMed

5.

Research   Open Access Highly Accessed

Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes

Jaclyn K Mann, Helen Byakwaga, Xiaomei T Kuang, Anh Q Le, Chanson J Brumme, Philip Mwimanzi, Saleha Omarjee, Eric Martin, Guinevere Q Lee, Bemuluyigza Baraki, Ryan Danroth, Rosemary McCloskey, Conrad Muzoora, David R Bangsberg, Peter W Hunt, Philip JR Goulder, Bruce D Walker, P Harrigan, Jeff N Martin, Thumbi Ndung’u, Mark A Brockman, Zabrina L Brumme Retrovirology 2013, 10:100 (16 September 2013)

Abstract | Full text | PDF | PubMed

6.

Letters to the Editor   Open Access

Dilution and the theoretical description of growth-rate dependent gene expression

Marius Hintsche, Stefan Klumpp Journal of Biological Engineering 2013, 7:22 (16 September 2013)

Abstract | Full text | PDF | PubMed

7.

Technical notes   Open Access Highly Accessed

Real-time cardiovascular magnetic resonance at 1.5 T using balanced SSFP and 40 ms resolution

Dirk Voit, Shuo Zhang, Christina Unterberg-Buchwald, Jan M Sohns, Joachim Lotz, Jens Frahm Journal of Cardiovascular Magnetic Resonance 2013, 15:79 (12 September 2013)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access Highly Accessed

The saliva microbiome of Pan and Homo

Jing Li, Ivan Nasidze, Dominique Quinque, Mingkun Li, Hans-Peter Horz, Claudine André, Rosa M Garriga, Michel Halbwax, Anne Fischer, Mark Stoneking BMC Microbiology 2013, 13:204 (11 September 2013)

Abstract | Full text | PDF | PubMed

9.

Research article   Open Access

Odor naming and interpretation performance in 881 schizophrenia subjects: association with clinical parameters

Anne Kästner, Dörthe Malzahn, Martin Begemann, Constanze Hilmes, Heike Bickeböller, Hannelore Ehrenreich BMC Psychiatry 2013, 13:218 (30 August 2013)

Abstract | Full text | PDF

10.

Research   Open Access

The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell

Karlheinz Mann, Matthias Mann Proteome Science 2013, 11:40 (27 August 2013)

Abstract | Full text | PDF | PubMed

11.

Research article   Open Access

Synaptic protein and pan-neuronal gene expression and their regulation by Dicer-dependent mechanisms differ between neurons and neuroendocrine cells

Jutta Stubbusch, Priyanka Narasimhan, Katrin Huber, Klaus Unsicker, Hermann Rohrer, Uwe Ernsberger Neural Development 2013, 8:16 (20 August 2013)

Abstract | Full text | PDF | PubMed

12.

Method   Open Access Highly Accessed

PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs

Annalisa Marsico, Matthew R Huska, Julia Lasserre, Haiyang Hu, Dubravka Vucicevic, Anne Musahl, Ulf Andersson Orom, Martin Vingron Genome Biology 2013, 14:R84 (19 August 2013)

Abstract | Provisional PDF | PubMed |  Editor’s summary

A new method for the detection of intronic microRNA promoters

13.

Meeting abstract   Open Access

Regulation of proliferation and survival of B-lymphocytes by Ebf1 - implications in leukaemia

Ildikó Győry, Rudolf Grosschedl Clinical Epigenetics 2013, 5(Suppl 1):S4 (19 August 2013)

Full text | PDF

14.

Research article   Open Access

Transcriptional profiling reveals progeroid Ercc1 -/Δ mice as a model system for glomerular aging

Bernhard Schermer, Valerie Bartels, Peter Frommolt, Bianca Habermann, Fabian Braun, Joachim L Schultze, Marianne Roodbergen, Jan HJ Hoeijmakers, Björn Schumacher, Peter Nürnberg, Martijn ET Dollé, Thomas Benzing, Roman-Ulrich Müller, Christine E Kurschat BMC Genomics 2013, 14:559 (16 August 2013)

Abstract | Full text | PDF | PubMed

15.

Software   Open Access Highly Accessed

kClust: fast and sensitive clustering of large protein sequence databases

Maria Hauser, Christian E Mayer, Johannes Söding BMC Bioinformatics 2013, 14:248 (15 August 2013)

Abstract | Full text | PDF | PubMed

16.

Review   Open Access Highly Accessed

Intraflagellar transport complex structure and cargo interactions

Sagar Bhogaraju, Benjamin D Engel, Esben Lorentzen Cilia 2013, 2:10 (14 August 2013)

Abstract | Full text | PDF | PubMed

17.

Research   Open Access

Cucurbitacin covalent bonding to cysteine thiols: the filamentous-actin severing protein Cofilin1 as an exemplary target

Mads Gabrielsen, Maike Schuldt, June Munro, Dagmara Borucka, Jenifer Cameron, Mark Baugh, Andrzej Mleczak, Sergio Lilla, Nicholas Morrice, Michael F Olson Cell Communication and Signaling 2013, 11:58 (14 August 2013)

Abstract | Full text | PDF | PubMed

18.

Poster presentation   Open Access

Effects of Multikinase inhibitors on pressure overload-induced right ventricular remodelling

Baktybek Kojonazarov, Akylbek Sydykov, Soni Pullamsetti, Himal Luitel, Bhola K Dahal, Djuro Kosanovic, Xia Tian, Matthaeus Majewski, Christin Baumann, Steve Evans, Peter Phillips, David Fairman, Neil Davie, Chris Wayman, Iain Kilty, Norbert Weissmann, Friedrich Grimminger, Werner Seeger, Hossein Ghofrani, Ralph Schermuly Journal of Inflammation 2013, 10(Suppl 1):P37 (14 August 2013)

Full text | PDF

19.

Methodology article   Open Access Highly Accessed

Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems

Maria Rodriguez-Fernandez, Markus Rehberg, Andreas Kremling, Julio R Banga BMC Systems Biology 2013, 7:76 (12 August 2013)

Abstract | Full text | PDF | PubMed

20.

Research   Open Access

Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data

Ki-Hong Jung, Hyun-Jung Gho, Hoi-Khoanh Giong, Anil Kumar Nalini Chandran, Quynh-Nga Nguyen, HeeBak Choi, Tian Zhang, Wen Wang, Jin-Hyun Kim, Hong-Kyu Choi, Gynheung An Rice 2013, 6:19 (10 August 2013)

Abstract | Full text | PDF

21.

Research article   Open Access Highly Accessed

Quorum sensing influences growth and photosynthetic membrane production in high-cell-density cultivations of Rhodospirillum rubrum

Lisa Carius, Anke B Carius, Matthew McIntosh, Hartmut Grammel BMC Microbiology 2013, 13:189 (8 August 2013)

Abstract | Full text | PDF | PubMed

22.

Methodology article   Open Access Highly Accessed

Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation

Andrea Pinna, Sandra Heise, Robert J Flassig, Alberto Fuente, Steffen Klamt BMC Systems Biology 2013, 7:73 (8 August 2013)

Abstract | Full text | PDF | PubMed

23.

Research article   Open Access Highly Accessed

Novel candidate genes influencing natural variation in potato tuber cold sweetening identified by comparative proteomics and association mapping

Matthias Fischer, Lena Schreiber, Thomas Colby, Markus Kuckenberg, Eckhard Tacke, Hans-Reinhard Hofferbert, Jürgen Schmidt, Christiane Gebhardt BMC Plant Biology 2013, 13:113 (7 August 2013)

Abstract | Full text | PDF | PubMed

24.

Research article   Open Access Highly Accessed

Hydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase

Mikael Elias, Dorothee Liebschner, Jurgen Koepke, Claude Lecomte, Benoit Guillot, Christian Jelsch, Eric Chabriere BMC Research Notes 2013, 6:308 (2 August 2013)

Abstract | Full text | PDF | PubMed

25.

Method   Open Access Highly Accessed

Estimating exome genotyping accuracy by comparing to data from large scale sequencing projects

Verena Heinrich, Tom Kamphans, Jens Stange, Dmitri Parkhomchuk, Jochen Hecht, Thorsten Dickhaus, Peter N Robinson, Peter M Krawitz Genome Medicine 2013, 5:69 (31 July 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Using a genotype weighted metric and comparison to a high quality reference set, quality control in exome sequencing can be easily performed on large-scale data sets.

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