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76.

Methods   Open Access

Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana

Thanh Theresa Dinh, Michael O’Leary, So Youn Won, Shengben Li, Lorena Arroyo, Xigang Liu, Andrew Defries, Binglian Zheng, Sean R Cutler, Xuemei Chen Silence 2013, 4:1 (5 April 2013)

Abstract | Full text | PDF | PubMed

77.

Software   Open Access Highly Accessed

ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction

Zhiqiu Hu, Jeffrey D Ehlers, Philip A Roberts, Timothy J Close, Mitchell R Lucas, Steve Wanamaker, Shizhong Xu BMC Genetics 2012, 13:9 (23 February 2012)

Abstract | Full text | PDF | PubMed

78.

Research article   Open Access Highly Accessed

Intragenomic conflict in populations infected by Parthenogenesis Inducing Wolbachia ends with irreversible loss of sexual reproduction

Richard Stouthamer, James E Russell, Fabrice Vavre, Leonard Nunney BMC Evolutionary Biology 2010, 10:229 (28 July 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A conflict over sex ratios between the bacterial cytoplasmically inherited genes and the host nuclear genes is the cause of selection of low fertility mutants in Hymenoptera insects infected with parthenogenesis inducing Wolbachia.

79.

Research article   Open Access Highly Accessed

Predicting conserved protein motifs with Sub-HMMs

Kevin Horan, Christian R Shelton, Thomas Girke BMC Bioinformatics 2010, 11:205 (26 April 2010)

Abstract | Full text | PDF | PubMed

80.

Research article   Open Access

Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi

Kristiina Nygren, Andreas Wallberg, Nicklas Samils, Jason E Stajich, Jeffrey P Townsend, Magnus Karlsson, Hanna Johannesson BMC Evolutionary Biology 2012, 12:229 (27 November 2012)

Abstract | Full text | PDF | PubMed

81.

Database   Open Access Highly Accessed

Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork

Arnis Druka, Ilze Druka, Arthur G Centeno, Hongqiang Li, Zhaohui Sun, William TB Thomas, Nicola Bonar, Brian J Steffenson, Steven E Ullrich, Andris Kleinhofs, Roger P Wise, Timothy J Close, Elena Potokina, Zewei Luo, Carola Wagner, Günther F Schweizer, David F Marshall, Michael J Kearsey, Robert W Williams, Robbie Waugh BMC Genetics 2008, 9:73 (18 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

82.

Research article   Open Access Highly Accessed

In silico discovery of transcription regulatory elements in Plasmodium falciparum

Jason A Young, Jeffery R Johnson, Chris Benner, S Frank Yan, Kaisheng Chen, Karine G Le Roch, Yingyao Zhou, Elizabeth A Winzeler BMC Genomics 2008, 9:70 (7 February 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

83.

Research article   Open Access

New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria

Panagiotis Ioannidis, Julie Hotopp, Panagiotis Sapountzis, Stefanos Siozios, Georgios Tsiamis, Seth R Bordenstein, Laura Baldo, John H Werren, Kostas Bourtzis BMC Genomics 2007, 8:182 (20 June 2007)

Abstract | Full text | PDF | PubMed

84.

Research article   Open Access

Molecular evidence for the evolution of ichnoviruses from ascoviruses by symbiogenesis

Yves Bigot, Sylvie Samain, Corinne Augé-Gouillou, Brian A Federici BMC Evolutionary Biology 2008, 8:253 (18 September 2008)

Abstract | Full text | PDF | PubMed

85.

Review   Open Access

Small molecule activators of the Trk receptors for neuroprotection

Nicholas JG Webster, Michael C Pirrung BMC Neuroscience 2008, 9(Suppl 2):S1 (3 December 2008)

Abstract | Full text | PDF | PubMed

86.

Research article   Open Access

The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups

Howard S Judelson, Audrey MV Ah-Fong BMC Genomics 2010, 11:700 (9 December 2010)

Abstract | Full text | PDF | PubMed

87.

Research article   Open Access

Fast empirical Bayesian LASSO for multiple quantitative trait locus mapping

Xiaodong Cai, Anhui Huang, Shizhong Xu BMC Bioinformatics 2011, 12:211 (26 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

88.

Research article   Open Access

Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress

Harkamal Walia, Clyde Wilson, Abdelbagi M Ismail, Timothy J Close, Xinping Cui BMC Genomics 2009, 10:398 (25 August 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

89.

Software   Open Access

Composition Profiler: a tool for discovery and visualization of amino acid composition differences

Vladimir Vacic, Vladimir N Uversky, A Keith Dunker, Stefano Lonardi BMC Bioinformatics 2007, 8:211 (19 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

90.

Research   Open Access

Binding of protegrin-1 to Pseudomonas aeruginosa and Burkholderia cepacia

Mark T Albrecht, Wei Wang, Olga Shamova, Robert I Lehrer, Neal L Schiller Respiratory Research 2002, 3:18 (14 March 2002)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Resistance of the opportunistic pathogen Burkholderia cepacia to protegrin-1, an antimicrobial peptide, is the result of a paucity of binding sites for the peptide on lipid A of the microorganism's surface.

91.

Research article   Open Access

Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array

Sayan Das, Prasanna R Bhat, Chinta Sudhakar, Jeffrey D Ehlers, Steve Wanamaker, Philip A Roberts, Xinping Cui, Timothy J Close BMC Genomics 2008, 9:107 (28 February 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

92.

Research   Open Access

Computational prediction of novel non-coding RNAs in Arabidopsis thaliana

Dandan Song, Yang Yang, Bin Yu, Binglian Zheng, Zhidong Deng, Bao-Liang Lu, Xuemei Chen, Tao Jiang BMC Bioinformatics 2009, 10(Suppl 1):S36 (30 January 2009)

Abstract | Full text | PDF | PubMed

93.

Research   Open Access

DNA binding activities of the Herves transposase from the mosquito Anopheles gambiae

Amandeep S Kahlon, Robert H Hice, David A O'Brochta, Peter W Atkinson Mobile DNA 2011, 2:9 (20 June 2011)

Abstract | Full text | PDF | PubMed

94.

Methodology article   Open Access

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

Hana Šimková, Jan T Svensson, Pascal Condamine, Eva Hřibová, Pavla Suchánková, Prasanna R Bhat, Jan Bartoš, Jan Šafář, Timothy J Close, Jaroslav Doležel BMC Genomics 2008, 9:294 (19 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

95.

Research Article   Open Access

Design and Optimization of the VideoWeb Wireless Camera Network

HoangThanh Nguyen, Bir Bhanu, Ankit Patel, Ramiro Diaz EURASIP Journal on Image and Video Processing 2010, 2010:865803 (18 August 2010)

Abstract | Full text | PDF

96.

Research   Open Access

Accurate HLA type inference using a weighted similarity graph

Minzhu Xie, Jing Li, Tao Jiang BMC Bioinformatics 2010, 11(Suppl 11):S10 (14 December 2010)

Abstract | Full text | PDF | PubMed

97.

Research article   Open Access

Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Harkamal Walia, Clyde Wilson, Pascal Condamine, Abdelbagi M Ismail, Jin Xu, Xinping Cui, Timothy J Close BMC Genomics 2007, 8:87 (30 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

98.

Methodology article   Open Access Highly Accessed

Genome-wide analysis of antisense transcription with Affymetrix exon array

Xijin Ge, Wendy S Rubinstein, Yong-chul Jung, Qingfa Wu BMC Genomics 2008, 9:27 (22 January 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

99.

Research   Open Access

Pyrazine derivatives in cigarette smoke inhibit hamster oviductal functioning

Karen Riveles, Ryan Roza, Janet Arey, Prue Talbot Reproductive Biology and Endocrinology 2004, 2:23 (12 May 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

100.

Methodology article   Open Access

Chromatin-driven de novo discovery of DNA binding motifs in the human malaria parasite

Elena Y Harris, Nadia Ponts, Karine G Le Roch, Stefano Lonardi BMC Genomics 2011, 12:601 (13 December 2011)

Abstract | Full text | PDF | PubMed

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