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	1.	Software The Transcription Factor Encyclopedia Dimas Yusuf, Stefanie L Butland, Magdalena I Swanson, Eugene Bolotin, Amy Ticoll, Warren A Cheung, Xiao Cindy Zhang, Christopher TD Dickman, Debra L Fulton, Jonathan S Lim, Jake M Schnabl, Oscar HP Ramos, Mireille Vasseur-Cognet, Charles N de Leeuw, Elizabeth M Simpson, Gerhart U Ryffel, Eric W-F Lam, Ralf Kist, Miranda SC Wilson, Raquel Marco-Ferreres, Jan J Brosens, Leonardo L Beccari, Paola Bovolenta, Bérénice A Benayoun, Lara J Monteiro, Helma DC Schwenen, Lars Grontved, Elizabeth Wederell, Susanne Mandrup, Reiner A Veitia et al. Genome Biology 2012, 13:R24 (29 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary A high quality compendium of transcription factor data that allows researchers to add new data via a peer-review system
	2.	Research Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function Xiaoming Zhang, Jing Xia, Yifan E Lii, Blanca E Barrera-Figueroa, Xuefeng Zhou, Shang Gao, Lu Lu, Dongdong Niu, Zheng Chen, Christy Leung, Timothy Wong, Huiming Zhang, Jianhua Guo, Yi Li, Renyi Liu, Wanqi Liang, Jian-Kang Zhu, Weixiong Zhang, Hailing Jin Genome Biology 2012, 13:R20 (22 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary In Arabidopsis and rice, natural antisense transcripts are processed into siRNAs by DCL1 and DCL3
	3.	Research *Genome sequence of the necrotrophic plant pathogen Pythium ultimum* reveals original pathogenicity mechanisms and effector repertoire** C André Lévesque, Henk Brouwer, Liliana Cano, John P Hamilton, Carson Holt, Edgar Huitema, Sylvain Raffaele, Gregg P Robideau, Marco Thines, Joe Win, Marcelo M Zerillo, Gordon W Beakes, Jeffrey L Boore, Dana Busam, Bernard Dumas, Steve Ferriera, Susan I Fuerstenberg, Claire MM Gachon, Elodie Gaulin, Francine Govers, Laura Grenville-Briggs, Neil Horner, Jessica Hostetler, Rays HY Jiang, Justin Johnson, Theerapong Krajaejun, Haining Lin, Harold JG Meijer, Barry Moore, Paul Morris et al. Genome Biology 2010, 11:R73 (13 July 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The genome sequence of the plant pathogenic oomycete, Pythium ultimum and a comparison with the related potato blight pathogen genome reveals differences in pathogenicity.
	4.	Methods Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana So Youn Won, Shengben Li, Binglian Zheng, Yuanyuan Zhao, Dongming Li, Xin Zhao, Huilan Yi, Lei Gao, Thanh Theresa Dinh, Xuemei Chen Silence 2012, 3:6 (7 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A luciferase-based reporter system, LUCH, is used to screen for bidirectional mutants that enhance or suppress transcriptional gene silencing, elucidating the mechanisms of DNA methylation and demethylation.
	5.	Research Immunity and other defenses in pea aphids, Acyrthosiphon pisum Nicole M Gerardo, Boran Altincicek, Caroline Anselme, Hagop Atamian, Seth M Barribeau, Martin de Vos, Elizabeth J Duncan, Jay D Evans, Toni Gabaldón, Murad Ghanim, Adelaziz Heddi, Isgouhi Kaloshian, Amparo Latorre, Andres Moya, Atsushi Nakabachi, Benjamin J Parker, Vincente Pérez-Brocal, Miguel Pignatelli, Yvan Rahbé, John S Ramsey, Chelsea J Spragg, Javier Tamames, Daniel Tamarit, Cecilia Tamborindeguy, Caroline Vincent-Monegat, Andreas Vilcinskas Genome Biology 2010, 11:R21 (23 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The genome of the pea aphid Acyrthosiphon pisum lacks genes thought to be crucial in other insects for recognition, signaling and killing of microbes.
	6.	Research article A fungal phylogeny based on 82 complete genomes using the composition vector method Hao Wang, Zhao Xu, Lei Gao, Bailin Hao BMC Evolutionary Biology 2009, 9:195 (10 August 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	7.	Research article Development and implementation of high-throughput SNP genotyping in barley Timothy J Close, Prasanna R Bhat, Stefano Lonardi, Yonghui Wu, Nils Rostoks, Luke Ramsay, Arnis Druka, Nils Stein, Jan T Svensson, Steve Wanamaker, Serdar Bozdag, Mikeal L Roose, Matthew J Moscou, Shiaoman Chao, Rajeev K Varshney, Péter Szűcs, Kazuhiro Sato, Patrick M Hayes, David E Matthews, Andris Kleinhofs, Gary J Muehlbauer, Joseph DeYoung, David F Marshall, Kavitha Madishetty, Raymond D Fenton, Pascal Condamine, Andreas Graner, Robbie Waugh BMC Genomics 2009, 10:582 (4 December 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A high-density consensus genetic map of barley based only on complete and error-free datasets and genic markers, enables a high resolution comparison of barley and rice genomes and will aid marker-assisted breeding and association studies.
	8.	Research article High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice Blanca E Barrera-Figueroa, Lei Gao, Zhigang Wu, Xuefeng Zhou, Jianhua Zhu, Hailing Jin, Renyi Liu, Jian-Kang Zhu BMC Plant Biology 2012, 12:132 (3 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	9.	Research *Rapid selection and identification of Miscanthus* genotypes with enhanced glucan and xylan yields from hydrothermal pretreatment followed by enzymatic hydrolysis** Taiying Zhang, Charles E Wyman, Katrin Jakob, Bin Yang Biotechnology for Biofuels 2012, 5:56 (3 August 2012) Abstract \| Full text \| PDF \| PubMed
	10.	Research Supplementation with xylanase and β-xylosidase to reduce xylo-oligomer and xylan inhibition of enzymatic hydrolysis of cellulose and pretreated corn stover Qing Qing, Charles E Wyman Biotechnology for Biofuels 2011, 4:18 (24 June 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	11.	Research article A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea Jonathan H Geisler, Michael R McGowen, Guang Yang, John Gatesy BMC Evolutionary Biology 2011, 11:112 (25 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The most complete morphological and molecular super matrix for Cetacea to date reveals that many character states shared by river dolphins evolved in their oceanic ancestors contrary to previous views.
	12.	Review Misuse of "study drugs:" prevalence, consequences, and implications for policy Steve Sussman, Mary Pentz, Donna Spruijt-Metz, Toby Miller Substance Abuse Treatment, Prevention, and Policy 2006, 1:15 (9 June 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	13.	Review Smoking and reproduction: The oviduct as a target of cigarette smoke Prue Talbot, Karen Riveles Reproductive Biology and Endocrinology 2005, 3:52 (28 September 2005) Abstract \| Full text \| PDF \| PubMed
	14.	Research *Cloning and characterization of microRNAs from wheat (Triticum aestivum* L.)** Yingyin Yao, Ganggang Guo, Zhongfu Ni, Ramanjulu Sunkar, Jinkun Du, Jian-Kang Zhu, Qixin Sun Genome Biology 2007, 8:R96 (1 June 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A small RNA library was used to identify 58 miRNAs from 43 miRNA families from wheat (Triticum aestivum L.), and 46 potential targets were predicted.
	15.	Research Multiple distinct small RNAs originate from the same microRNA precursors Weixiong Zhang, Shang Gao, Xuefeng Zhou, Jing Xia, Padmanabhan Chellappan, Xiang Zhou, Xiaoming Zhang, Hailing Jin Genome Biology 2010, 11:R81 (9 August 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Deep sequencing of Arabidopsis small RNAs reveals the existence of novel miRNA-like RNAs generated from miRNA precursor hairpins.
	16.	Research article Identification of novel and candidate miRNAs in rice by high throughput sequencing Ramanjulu Sunkar, Xuefeng Zhou, Yun Zheng, Weixiong Zhang, Jian-Kang Zhu BMC Plant Biology 2008, 8:25 (29 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	17.	Research *Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum* L.)** Mingxiong Pang, Andrew W Woodward, Vikram Agarwal, Xueying Guan, Misook Ha, Vanitharani Ramachandran, Xuemei Chen, Barbara A Triplett, David M Stelly, Z Jeffrey Chen Genome Biology 2009, 10:R122 (4 November 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Rapid and dynamic changes in the expression of small RNAs are seen during ovule and fiber development in allotetraploid cotton.
	18.	Research article Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes Blanca E Barrera-Figueroa, Lei Gao, Ndeye N Diop, Zhigang Wu, Jeffrey D Ehlers, Philip A Roberts, Timothy J Close, Jian-Kang Zhu, Renyi Liu BMC Plant Biology 2011, 11:127 (17 September 2011) Abstract \| Full text \| PDF \| PubMed
	19.	Research article Novel and nodulation-regulated microRNAs in soybean roots Senthil Subramanian, Yan Fu, Ramanjulu Sunkar, W Brad Barbazuk, Jian-Kang Zhu, Oliver Yu BMC Genomics 2008, 9:160 (10 April 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	20.	Research article 454 sequencing put to the test using the complex genome of barley Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein BMC Genomics 2006, 7:275 (26 October 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21.	Research Simultaneous cell growth and ethanol production from cellulose by an engineered yeast consortium displaying a functional mini-cellulosome Garima Goyal, Shen-Long Tsai, Bhawna Madan, Nancy A DaSilva, Wilfred Chen Microbial Cell Factories 2011, 10:89 (1 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	22.	Research Separating metagenomic short reads into genomes via clustering Olga Tanaseichuk, James Borneman, Tao Jiang Algorithms for Molecular Biology 2012, 7:27 (26 September 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research article *Novel core promoter elements in the oomycete pathogen Phytophthora infestans* and their influence on expression detected by genome-wide analysis** Sourav Roy, Laetitia Poidevin, Tao Jiang, Howard S Judelson BMC Genomics 2013, 14:106 (16 February 2013) Abstract \| Full text \| PDF \| PubMed
	24.	Nano Express Electro-synthesis of novel nanostructured PEDOT films and their application as catalyst support Cuifeng Zhou, Zongwen Liu, Yushan Yan, Xusheng Du, Yiu-Wing Mai, Simon Ringer Nanoscale Research Letters 2011, 6:364 (27 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25.	Research article Partial sequencing of the bottle gourd genome reveals markers useful for phylogenetic analysis and breeding Pei Xu, Xiaohua Wu, Jie Luo, Baogen Wang, Yonghua Liu, Jeffrey D Ehlers, Sha Wang, Zhongfu Lu, Guojing Li BMC Genomics 2011, 12:467 (27 September 2011) Abstract \| Full text \| PDF \| PubMed
	26.	Research article Untangling spider silk evolution with spidroin terminal domains Jessica E Garb, Nadia A Ayoub, Cheryl Y Hayashi BMC Evolutionary Biology 2010, 10:243 (9 August 2010) Abstract \| Full text \| PDF \| PubMed
	27.	Research article Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes Yujun Han, Shanshan Qin, Susan R Wessler BMC Genomics 2013, 14:71 (31 January 2013) Abstract \| Full text \| PDF \| PubMed
	28.	Research article *Co-option of EDM2 to distinct regulatory modules in Arabidopsis thaliana* development** Tokuji Tsuchiya, Thomas Eulgem BMC Plant Biology 2010, 10:203 (14 September 2010) Abstract \| Full text \| PDF \| PubMed
	29.	Research article *Leaf morphology in Cowpea [Vigna unguiculata* (L.) Walp]: QTL analysis, physical mapping and identifying a candidate gene using synteny with model legume species** Marti Pottorff, Jeffrey D Ehlers, Christian Fatokun, Philip A Roberts, Timothy J Close BMC Genomics 2012, 13:234 (12 June 2012) Abstract \| Full text \| PDF \| PubMed
	30.	Research *The ultrastructure of book lung development in the bark scorpion Centruroides gracilis* (Scorpiones: Buthidae)** Roger D Farley Frontiers in Zoology 2011, 8:18 (27 July 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	31.	Research article Clustering of HIV-1 Subtypes Based on gp120 V3 Loop electrostatic properties Aliana López de Victoria, Chris A Kieslich, Apostolos K Rizos, Elias Krambovitis, Dimitrios Morikis BMC Biophysics 2012, 5:3 (7 February 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The spatial distributions of electrostatic potentials and charges in the V3 loop of HIV-1 protein gp120 may be responsible for both long- and short-range interactions with co-receptors, ultimately affecting viral entry into cells
	32.	Methodology article Generalized linear mixed model for segregation distortion analysis Haimao Zhan, Shizhong Xu BMC Genetics 2011, 12:97 (11 November 2011) Abstract \| Full text \| PDF \| PubMed
	33.	Editorial Welcome to Biotechnology for Biofuels Bärbel Hahn-Hägerdal, Michael E Himmel, Chris Somerville, Charles Wyman Biotechnology for Biofuels 2008, 1:1 (15 April 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	34.	Research *Ultrastructure of book gill development in embryos and first instars of the horseshoe crab Limulus polyphemus* L. (Chelicerata, Xiphosura)** Roger D Farley Frontiers in Zoology 2012, 9:4 (21 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	35.	Research article Open-label add-on treatment trial of minocycline in fragile X syndrome Carlo Paribello, Leeping Tao, Anthony Folino, Elizabeth Berry-Kravis, Michael Tranfaglia, Iryna M Ethell, Douglas W Ethell BMC Neurology 2010, 10:91 (11 October 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	36.	Research article Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure Alfonso Cuesta-Marcos, Péter Szűcs, Timothy J Close, Tanya Filichkin, Gary J Muehlbauer, Kevin P Smith, Patrick M Hayes BMC Genomics 2010, 11:707 (15 December 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	37.	Research article Bilateral enucleation alters gene expression and intraneocortical connections in the mouse Catherine A Dye, Charles W Abbott, Kelly J Huffman Neural Development 2012, 7:5 (30 January 2012) Abstract \| Full text \| PDF \| PubMed
	38.	Research Predominant constitutive CFTR conductance in small airways Xiaofei Wang, Christian Lytle, Paul M Quinton Respiratory Research 2005, 6:7 (17 January 2005) Abstract \| Full text \| PDF \| PubMed
	39.	Research article Cell and molecular mechanisms of keratinocyte function stimulated by insulin during wound healing Yan Liu, Melissa Petreaca, Min Yao, Manuela Martins-Green BMC Cell Biology 2009, 10:1 (12 January 2009) Abstract \| Full text \| PDF \| PubMed
	40.	Research article *Phylogeny and adaptive evolution of the brain-development gene microcephalin (MCPH1) in cetaceans* Michael R McGowen, Stephen H Montgomery, Clay Clark, John Gatesy BMC Evolutionary Biology 2011, 11:98 (14 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	41.	Review Role of C-C chemokine receptor type 7 and its ligands during neuroinflammation Shahani Noor, Emma H Wilson Journal of Neuroinflammation 2012, 9:77 (25 April 2012) Abstract \| Full text \| PDF \| PubMed
	42.	Research article A quantitative analysis of the mechanism that controls body size in Manduca sexta HF Nijhout, G Davidowitz, DA Roff Journal of Biology 2006, 5:16 (2 August 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Final body size in the moth Manduca sexta can be predicted from the juvenile caterpillar by modeling three key growth measurements to reveal how growth rate, nutrition and temperature determine eventual body size.
	43.	Research Notch regulates the angiogenic response via induction of VEGFR-1 Yasuhiro Funahashi, Carrie J Shawber, Marina Vorontchikhina, Anshula Sharma, Hasina H Outtz, Jan Kitajewski Journal of Angiogenesis Research 2010, 2:3 (26 January 2010) Abstract \| Full text \| PDF \| PubMed
	44.	Research article Molecular decay of enamel matrix protein genes in turtles and other edentulous amniotes Robert W Meredith, John Gatesy, Mark S Springer BMC Evolutionary Biology 2013, 13:20 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	45.	Methodology article *Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)* Kevin Stoffel, Hans van Leeuwen, Alexander Kozik, David Caldwell, Hamid Ashrafi, Xinping Cui, Xiaoping Tan, Theresa Hill, Sebastian Reyes-Chin-Wo, Maria-Jose Truco, Richard W Michelmore, Allen Van Deynze BMC Genomics 2012, 13:185 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	46.	Research article Effects of "second-hand" smoke on structure and function of fibroblasts, cells that are critical for tissue repair and remodeling Lina S Wong, Harry Green, Jo Feugate, Madhav Yadav, Eugene A Nothnagel, Manuela Martins-Green BMC Cell Biology 2004, 5:13 (5 April 2004) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	47.	Research article *A reference genetic map of C. clementina* hort. ex Tan.; citrus evolution inferences from comparative mapping** Patrick Ollitrault, Javier Terol, Chunxian Chen, Claire T Federici, Samia Lotfy, Isabelle Hippolyte, Frédérique Ollitrault, Aurélie Bérard, Aurélie Chauveau, Jose Cuenca, Gilles Costantino, Yildiz Kacar, Lisa Mu, Andres Garcia-Lor, Yann Froelicher, Pablo Aleza, Anne Boland, Claire Billot, Luis Navarro, François Luro, Mikeal L Roose, Frederick G Gmitter, Manuel Talon, Dominique Brunel BMC Genomics 2012, 13:593 (5 November 2012) Abstract \| Full text \| PDF \| PubMed
	48.	Research article 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea Chi Keung Cheng, Chun Hang Au, Sarah K Wilke, Jason E Stajich, Miriam E Zolan, Patricia J Pukkila, Hoi Shan Kwan BMC Genomics 2013, 14:195 (20 March 2013) Abstract \| Full text \| PDF \| PubMed
	49.	Research article *The mosquito Aedes aegypti* has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs** Peter Arensburger, Robert H Hice, Jennifer A Wright, Nancy L Craig, Peter W Atkinson BMC Genomics 2011, 12:606 (15 December 2011) Abstract \| Full text \| PDF \| PubMed
	50.	Research Ixodes scapularis saliva mitigates inflammatory cytokine secretion during Anaplasma phagocytophilum stimulation of immune cells Gang Chen, Maiara S Severo, Mohammad Sohail, Olivia S Sakhon, Stephen K Wikel, Michail Kotsyfakis, Joao HF Pedra Parasites & Vectors 2012, 5:229 (10 October 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary This study demonstrates that Ixodes scapularis saliva inhibits Toll-like (TLR) and Nod-like receptor (NLR) induced-inflammatory cytokine secretion by mouse and human immune cells. I. scapularis saliva also mitigates the cytokine response by macrophages during challenge with Anaplasma phagocytophilum. Image: Anaplasma phagocytophilum engulfed by macrophages [membranes (green), A. phagocytophilum (red), and nuclei (blue)]. Magnification is 600x4=2400.